| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | CP000731 | 6,552 | +TCTCCAGGCACTTGTGCATATTCTGAAA | intergenic (+1069/‑419) | cadX → / → USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | = 6552 | 0 (0.000) | 35 (0.630) +TCTCCAGGCACTTGTGCATATTCTGAAA |
32/224 | 0.7 | 100% | intergenic (+1069/‑419) | cadX/USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
| ? | CP000731 | 6553 = | 0 (0.000) | intergenic (+1070/‑418) | cadX/USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator | |||||
CACTAAAATTTCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAATCTCTAATTACACC > CP000731/6414‑6691 | cacTAAAATTTCAGGTTGTGATCTGATATCTACGCTGTAGTTGTCTACTTTAATATGTGATAATGCTGCCGAACAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAatccactc < 1:65622/141‑3 (MQ=255) tAAAATTTCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACtctcc > 1:49707‑M1/1‑136 (MQ=255) tAAAATTTCAGGTTGTGATTTAATCATCATGCTAGATTTTTCTAGTTCAAAAATTGATAATGCTACGAGAAAACCTGCTGGTGCAGATACCATAGACTCTTTAATAGACATTTCTTG‑GGGAATAAGAACAatccactctac > 2:74409/1‑136 (MQ=255) aaaTTTCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTG‑GCGAATAGGAACAATCCACtctccac > 2:25356‑M1/1‑134 (MQ=255) agtttgtgATTTGATATTCATTCCATATTGTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttg < 2:79632‑M1/138‑15 (MQ=255) ggTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATATACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttgt < 1:31872‑M1/141‑16 (MQ=255) ttGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTTTGCCATATACCATAGACTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttttgcatattct > 1:89250‑M1/1‑117 (MQ=255) tGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttgtgcatattctg < 1:151157‑M1/141‑26 (MQ=255) attcattcCATATTTTTCTAGTTCAAAAATTGATCACCAACCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaa < 1:53196‑M1/141‑30 (MQ=255) attcattcCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaa < 1:237449‑M1/141‑30 (MQ=255) ttcattcCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttgtgcctattctgaaaag > 1:104161‑M1/1‑111 (MQ=255) tgcattccaTATTTTCCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaat < 2:177162‑M1/139‑31 (MQ=255) attcCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgcaaatcca > 1:14210‑M1/1‑108 (MQ=255) attcCATATTTTTCAAGTTCAAACATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTGTAATAGACATTCCTCG‑CGGTATATGAACAATCCACtctccaggcacttgtgcatattctgaaaatcca < 1:182344‑M1/141‑34 (MQ=255) cATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGTCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttgtgcagatactgaaaagccacctg > 1:74039‑M1/1‑104 (MQ=255) tttCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtg > 2:136914‑M1/1‑98 (MQ=255) tttCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTG‑GCGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtg < 1:74409‑M1/141‑44 (MQ=255) tCTAGTTCAAAAATTGATAATCCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTG‑CGGAATACGAACAATCAACtctccaggcacttgtgcacattctgaaaatccacttctctgtgtc > 2:271609‑M1/1‑96 (MQ=255) atgtcaaAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATAACATAGACTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacg < 2:32329‑M1/138‑49 (MQ=255) aaaaaatTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaa < 2:63156‑M1/140‑53 (MQ=255) aaaTTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacat < 2:174275‑M1/141‑56 (MQ=255) tttataaTGCTGGGTTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcat < 2:14732‑M1/138‑59 (MQ=255) ttGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttgtgcatattcagaagatccacctgtatgtgtcgcgccaacatcat < 2:49707‑M1/141‑59 (MQ=255) tGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATCTCTAGCACGAACA‑GAACAATCCACgctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcata < 1:135033‑M1/141‑60 (MQ=255) tAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTG‑GGTAATAGGAACAATCCACtctccaggcacttgtgcatactctgaaaatccacctgtatgtgtaacgccaacatcataacc > 2:48551‑M1/1‑79 (MQ=255) tAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataacc < 2:200728‑M1/141‑63 (MQ=255) gcCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaact > 1:243432‑M1/1‑72 (MQ=255) ccGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaacta > 1:200807‑M1/1‑71 (MQ=255) aaaaCCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatac < 1:170605‑M1/141‑75 (MQ=255) aaaCCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaataca > 1:252096‑M1/1‑66 (MQ=255) gtgCCATATACCATAGACTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgcct > 1:280038‑M1/1‑57 (MQ=255) tgCCATATACCATAGACTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcatcaccagtaactaatacattatcgcctt > 2:153910‑M1/1‑56 (MQ=255) ccATATACCATAGACTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttct < 1:277861‑M1/141‑88 (MQ=255) aGACTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttcaacttatc > 2:78065‑M1/1‑43 (MQ=255) aCTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtctgtgtcacgccaacctcataaccagtaactaatacattatcgccttctttaaacataccat > 2:169724‑M1/1‑41 (MQ=255) aCTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcatgctaccctcgtaaccagtaactaatacattatcgccttctttaaacttatcat > 1:24041‑M1/1‑41 (MQ=255) ctctTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaacttatcatt < 1:201979‑M1/141‑102 (MQ=255) aTAGACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaacttatcattcgaactt > 1:150834‑M1/1‑33 (MQ=255) gACATTTCTTG‑GGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaacttatcattcgaacttgat > 2:6478‑M1/1‑30 (MQ=255) gggAATATGAACAATCCACtcgccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattaccgccttctttaaacttatcattcgaacttgattcaacaatacc < 2:89250‑M1/141‑123 (MQ=255) ggAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaacctatcattcgcacttaattcaacaatacct > 2:257425‑M1/1‑18 (MQ=255) aCAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaacttatcattcgaacttgattcaacaatacctgcaaaatct > 2:83014‑M1/1‑9 (MQ=255) aCtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaacttatcattcggacttgattcaacaatacctgcaaaatctataccag > 1:240558‑M1/1‑2 (MQ=255) | CACTAAAATTTCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTG‑GGGAATAGGAACAATCCACATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAATCTCTAATTACACC > CP000731/6414‑6691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |