BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	1947 =	695 (0.920)	5 (0.010)	5/264	42.3	0.76%	intergenic (+180/+146)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
*	?	NC_012417	2073 =	651 (0.920)	5 (0.010)	5/264	42.3	0.76%	intergenic (+306/+20)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 699 total aligned reads displayed.

TCACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAT  >  NC_012417/1807‑2087

tCACACTGTTTTTTTATTGCTATATGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAAGAAAAAATAAATGACGCATTTATGCATAGAAAAt                                                                                                                                              >  2:104425/1‑141 (MQ=255)

 cacaCTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAtt                                                                                                                                             <  1:71343/141‑1 (MQ=255)

 aacacTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTAGACGAGATGGAAGAATAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAtt                                                                                                                                             <  2:29597/140‑1 (MQ=255)

  acacTTTTTTTTTATTAATATTGGTGTTGTTGCTTACTTTTTGTTTTTATATAAAGATGATGCTTTTGACGAGATGAAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAttt                                                                                                                                            <  2:171264/141‑1 (MQ=255)

  acacTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAttt                                                                                                                                            <  1:183538/141‑1 (MQ=255)

  acacTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTAGCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAttt                                                                                                                                            >  1:89869/1‑141 (MQ=255)

     cTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTAtt                                                                                                                                         <  1:22613/141‑1 (MQ=255)

      tGTTTTTTTATTCCTATTTGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTg                                                                                                                                        <  1:145999/141‑1 (MQ=255)

       gTTTTTGTATACGTATTGTTTTTGTTGATGACTTTTTGTTTTTCTATAAAGATGAGGTTTTTGACGAGATGGAAAAAAAATATGATTATCAAGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGa                                                                                                                                       <  2:123243/141‑1 (MQ=255)

           ttttAGTCCTATGTGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGtt                                                                                                                                   <  1:34241/141‑1 (MQ=255)

             ttATTCGTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTga                                                                                                                                 <  1:41395/141‑1 (MQ=255)

              tATTCCTATTGGTTTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAATATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTgag                                                                                                                                <  1:197238/141‑1 (MQ=255)

              tATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTTTATAAAGATGATGCTTTTGACGAGATGGTAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTgag                                                                                                                                >  2:141357/1‑141 (MQ=255)

              aaTTACTAATGGTATTTTTGCTTACTTTATGAATTTCTATAAAGATAATACTATTGACAATATGAAAGAAAAATATGATCATCATAAAGATAATAAAAAATAGATGACGCATTTATGCCGAGAAAATTTATTGATGTTgag                                                                                                                                <  2:223291/140‑1 (MQ=255)

               aTTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGTTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTgaga                                                                                                                               <  1:238221/141‑1 (MQ=255)

               aTTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTgaga                                                                                                                               >  1:74229/1‑141 (MQ=255)

               aTTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTgaga                                                                                                                               >  1:29518/1‑141 (MQ=255)

                 tCCTATTGGTGTTGTTACTTACTTTTTATTTTTCTATAAAGATGCTGCTTTTTACGCATCGGAAGAGAGTCGTGTTGGTCATGAGGGTAGTTAAAGATATACGACGCGTTTATGCCGAGAAAATTTATTGATTTTGacaaa                                                                                                                             >  2:232744/1‑140 (MQ=255)

                      ttGGTGTTGTTGCTTACTTTGTGTTTTTCTATAAAGATGGTGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAAccc                                                                                                                        <  2:162197/141‑1 (MQ=255)

                          tgttgtTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTaa                                                                                                                    >  1:45598/1‑141 (MQ=255)

                            ttgttgCTTACTTTTTTTTTTTCTGTAAAGATTTTGCTTTTTATGTGATGGAAGAAATATATGATTATCATGAATATAATAAAAAATAGACGACGCATTTATGCCTAGAAAATTTATTGATGTTGAGAATAACCCTTAACt                                                                                                                  >  2:244126/1‑141 (MQ=37)

                             tgttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTa                                                                                                                 <  1:97868/141‑1 (MQ=255)

                              gttgttTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTaa                                                                                                                <  2:132339/141‑1 (MQ=255)

                              gttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTaa                                                                                                                >  2:149080/1‑141 (MQ=255)

                               ttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTaaa                                                                                                               >  1:63795/1‑141 (MQ=255)

                                     aCTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCa                                                                                                         >  1:189750/1‑141 (MQ=255)

                                      cTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAg                                                                                                        >  2:284510/1‑141 (MQ=255)

                                       tttttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGa                                                                                                       >  2:182284/1‑141 (MQ=255)

                                         tttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACg                                                                                                     <  1:214930/141‑1 (MQ=255)

                                         tttGTGTTTCTATAAAGATGATGCTTTTGACGAGATACCACAAAAATCTGCTCAACATCACACACACAAACCCTACACGACGCATTTCTGCCGAGAAAATTTATTCATGTCTTACACAATCTTTAACTAAACTTGCAGACg                                                                                                     <  2:265605/141‑1 (MQ=255)

                                          ttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGa                                                                                                    >  1:100077/1‑141 (MQ=255)

                                          ttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGa                                                                                                    <  1:264295/141‑1 (MQ=255)

                                                ttCTATAAAGATGATGCTTTTGACGAGATGGAAGCAAAATCTGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATTTTGGTAAGACCCCTTAACTAAACTTGCCGACGAAttgtg                                                                                              >  2:238968/1‑137 (MQ=255)

                                                 tttttaAAGATGATGCTTTTGTCGAGATTGAAGAAAAATATGATTATCATTAATATAATAAAAAATAGACGATGCATTTATGCCGAGAAAATTTATTGATGTTTATAAGAACTCTTAACTAGACTTGCAGACTAATGtggt                                                                                             >  2:12851/5‑138 (MQ=255)

                                                  cTATAAAGATGATGATCATGATGAGATTGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGc                                                                                            <  1:253752/141‑1 (MQ=25)

                                                   tataAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCa                                                                                           <  1:140378/141‑1 (MQ=255)

                                                    ataAAGATGATGGTTTTGACGAGATGGAAGAAAAATATGATTAGCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGTGAATATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCAt                                                                                          <  2:73311/141‑1 (MQ=255)

                                                    ataAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCAt                                                                                          <  2:77350/141‑1 (MQ=255)

                                                     taAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATa                                                                                         >  2:22091/1‑141 (MQ=255)

                                                      aaaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAg                                                                                        >  1:85312/1‑141 (MQ=255)

                                                      aaaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAg                                                                                        >  1:233738/1‑141 (MQ=255)

                                                      aaaGATGATGATTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGACGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAg                                                                                        <  2:88160/141‑1 (MQ=255)

                                                       gagagGATGCTATTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGc                                                                                       <  2:228189/140‑1 (MQ=255)

                                                             atgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTgcgc                                                                                 >  1:170382/1‑141 (MQ=255)

                                                             atgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGc                                                                                 <  1:17745/141‑1 (MQ=255)

                                                              tgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCt                                                                                >  1:156981/1‑141 (MQ=255)

                                                               gCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTa                                                                               <  1:276830/141‑1 (MQ=255)

                                                               gCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTa                                                                               <  1:127365/141‑1 (MQ=255)

                                                                 ttttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTCtt                                                                             >  1:271823/1‑141 (MQ=255)

                                                                     gACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAACAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGc                                                                         >  1:116563/1‑141 (MQ=255)

                                                                     gACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGc                                                                         >  1:37908/1‑141 (MQ=255)

                                                                       cGAGATGGCAGAAAAATATGATTACAATGACGAGAATAAAAAATAGACGACGCATCTATGCGGAGCAACTTTATTGATGTTGAGAAGACCCCTTAACTCACCTTGCCGGCGAAAGTCGGCATAGCGTGAGCTATTTAGCCg                                                                       >  2:166075/1‑141 (MQ=18)

                                                                           aTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCa                                                                   >  1:258790/1‑141 (MQ=255)

                                                                                 gaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAc                                                             <  2:94047/141‑1 (MQ=255)

                                                                                    aaaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTACAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTcaacaaa                                                          >  2:200810/1‑140 (MQ=255)

                                                                                     aaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGt                                                         <  2:153633/141‑1 (MQ=255)

                                                                                      atatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtt                                                        <  1:113957/141‑1 (MQ=255)

                                                                                      atatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtt                                                        <  1:187125/141‑1 (MQ=255)

                                                                                      atatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtt                                                        <  1:229744/141‑1 (MQ=255)

                                                                                      atatGATTATCATGAAGATAATAAAAAATAGACGACGCAATTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAACCTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtc                                                        >  2:47436/1‑140 (MQ=255)

                                                                                         ggATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTg                                                     <  1:80462/140‑1 (MQ=255)

                                                                                          gATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAATCCGACCATTCGACAAGTTTTgg                                                    <  1:150716/141‑1 (MQ=255)

                                                                                           aTTATAATGAAGATAATAAAAAATAGACGACGCATTTATGCTGTACAGATTTAGTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTggg                                                   <  2:60648/141‑1 (MQ=17)

                                                                                            ttATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGa                                                  <  1:57620/141‑1 (MQ=255)

                                                                                            ttATCATGAAGATAAGAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGa                                                  <  1:203822/141‑1 (MQ=255)

                                                                                                 ttGAAGATAATAAAAAATAGTCGACGTATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACGTTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGATAAGTTTTGGGATTGtt                                             <  2:248840/140‑1 (MQ=14)

                                                                                                 aTGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGtt                                             >  1:174283/1‑141 (MQ=255)

                                                                                                   gAAGATAATAAAAAATAGACGTCGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACTCTTACCTGAACTTGCAGCCGAATGTCGGCATAGCGTAAGCTATTGATCCGACCATTCGACAAGTTTTGGGATTGTTaa                                           <  2:189881/141‑1 (MQ=17)

                                                                                                   gAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTaa                                           >  2:68961/1‑141 (MQ=255)

                                                                                                    aaGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAg                                          <  2:145490/141‑1 (MQ=255)

                                                                                                      ggtaataaGAAATAGAGGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAGACTTGCAGACGTATGTCGGCAGAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAggg                                        <  2:198434/139‑1 (MQ=14)

                                                                                                       ataataAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGt                                       >  1:285775/1‑141 (MQ=255)

                                                                                                           taaAAAATAGATGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCg                                   <  1:122209/141‑1 (MQ=255)

                                                                                                           taaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCg                                   >  1:16286/1‑141 (MQ=255)

                                                                                                            aaaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGa                                  >  2:214342/1‑141 (MQ=255)

                                                                                                             aaaaaGAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAg                                 <  1:132564/141‑1 (MQ=38)

                                                                                                              aaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAgg                                <  1:167200/141‑1 (MQ=39)

                                                                                                               aaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGc                               <  2:43087/141‑1 (MQ=38)

                                                                                                                aaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCt                              <  1:243181/141‑1 (MQ=38)

                                                                                                                 atatACGACTCATTTATGCCGAGAAAATGTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGTGATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTATGGGATTGTTAAGGGTTCCGAGGCTc                             <  2:55882/141‑1 (MQ=11)

                                                                                                                 aTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTc                             <  1:106613/141‑1 (MQ=37)

                                                                                                                 aTAGACGACGCATTTATGCCGAGAAAAGTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTc                             <  1:102511/141‑1 (MQ=37)

                                                                                                                  tAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCa                            >  2:259287/1‑141 (MQ=38)

                                                                                                                  tAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCa                            >  2:254581/1‑141 (MQ=38)

                                                                                                                    gacgacGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAAc                          <  1:137747/141‑1 (MQ=35)

                                                                                                                    gacgacGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGCGATAATTAAGATTTCCGAGGCTCAAc                          <  2:175971/141‑1 (MQ=11)

                                                                                                                     acgacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCGGAGGCGCAACg                         >  1:28067/1‑141 (MQ=21)

                                                                                                                      cgacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAAAGCCGGCGAACCGTCTTCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGt                        >  1:66979/1‑141 (MQ=11)

                                                                                                                            aTTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaa                  >  1:22156/1‑141 (MQ=32)

                                                                                                                             tttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaaa                 >  1:54006/1‑141 (MQ=32)

                                                                                                                                attccGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCa              <  2:209744/138‑1 (MQ=17)

                                                                                                                                aTGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCa              >  1:50510/1‑141 (MQ=32)

                                                                                                                                aTGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAAGGTTCCTAAGCTCAACGTCAATAAAGCa              >  2:273159/1‑141 (MQ=12)

                                                                                                                                 tGCCGAGACAATTTATTGATGTTCAGAAGAACCCTTAACCAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCAGTCCAAAAGTTTTGGGATTGTTAAGGGTTCCGAGGATGCAGGTCAATAAAGaaa             >  1:250326/1‑141 (MQ=11)

                                                                                                                                 tGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGGGTGTCGGTGTACTGCAAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCaa             <  1:209405/141‑1 (MQ=11)

                                                                                                                                  gCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAAt            <  1:219619/141‑1 (MQ=32)

                                                                                                                                  gCCGAGAAAATTTATTGACGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAAt            <  1:92908/141‑1 (MQ=17)

                                                                                                                                  gCCGAGAAAATTGATTGATGTAGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAAt            <  1:144015/141‑1 (MQ=17)

                                                                                                                                     gagaAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTgg         >  2:110868/1‑141 (MQ=32)

                                                                                                                                       gaAAATTTATTAATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTGGGGATTGCTAAGGGTTCCAAGACACAACGTCAATAAAGCAATTggca       >  2:115374/1‑139 (MQ=11)

TCACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAT  >  NC_012417/1807‑2087

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.