New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | USA300TCH1516_ALE | 512620 = | 26 (1.050) | 22 (1.240) +TTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAA |
19/200 | 0.1 | 54.3% | intergenic (+688/‑6075) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
? | USA300TCH1516_ALE | 1998278 = | NA (NA) | intergenic (‑6/+3329) | USA300TCH1516_01882/USA300TCH1516_01883 | tRNA‑Val/tRNA‑Ala |
ACTGATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCA > USA300TCH1516_ALE/1998138‑1998393 | aCTGATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTAGAACCGCCGACCCTCTGCTTGTAAGGCAGAAGCTCTCCCAGCCGAGCTAATTCTCCGATCTa > 2:173223/1‑141 (MQ=255) tGATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAGTTCTCCGAGTTaaa > 1:227354/1‑141 (MQ=255) aCAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGc > 1:164932/1‑141 (MQ=255) aaGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCt > 1:44618/1‑141 (MQ=255) gcAGTTGCTCTATCAATTGAGCTAGGCCGGCAATATTTACGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGc < 2:180206/140‑1 (MQ=255) aGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCaa < 1:141090/141‑1 (MQ=255) tGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTCAAACTGCCTGGCCACgc > 2:17753/1‑140 (MQ=255) gCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAAGGtt > 1:51216/1‑141 (MQ=255) tctACCAATTGAGCTCGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGCGCTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATACTCTCCCAGCTCAGCTAATTCTCCCATATCAAACCACCTCGCAACGTTcc > 2:14794/1‑140 (MQ=14) tctACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTCACACAATTCTCAGACGTAACACTGCCTGGCAACGTTCt > 2:100728/1‑141 (MQ=14) aCCAGTTGGGCTAGGCCGGCGATATGTAAGCATAAATGGTGGAGAATGACGGCTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTAct < 2:233641/141‑1 (MQ=17) aGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGt > 2:48004/1‑141 (MQ=255) ccGGCAATATGTAGGAAGAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGACGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAg < 1:119436/141‑1 (MQ=255) cGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGt > 2:29731/1‑141 (MQ=255) tatGTAAGAATAAATGGTGGAGAATGACGGGTACGAACCGACGACCCTCTGCTTGTAAGGCAGATACTCTCCCGGCTGAGCTAATTCTCCGACTTAAAACTACCTCGCCACGTTCTACTCTAGCGGAACGTAAATTCGAcc > 2:253092/1‑140 (MQ=17) aaGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGAGTTAAAACTGCCTTTCAACGTTCTACTCTAGCGGAACGTAAGTTCAACtttcaa > 2:267708/1‑136 (MQ=14) aaaTGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGc > 1:162687/1‑141 (MQ=255) gtggAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTCACGGAACGTAAGTTCGACTCCCATCGCCCCTCAgg > 2:74100/1‑141 (MQ=14) gaATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCtt < 1:100728/141‑1 (MQ=255) gACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACt > 1:270290/1‑141 (MQ=255) aaCCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGCGCTAATTCTCCGATTTAAAACTGCCTGGCAGCGTTCTACTCTAGCGGCGCGTAAGTTCGACTACCATCGCCGCTACGTAGCTTATCTTCTGTTTTCg > 1:90160/1‑141 (MQ=14) cgccgcCTCTCTGCTTGTCAGGCAGAAGCTCGCCCAGCTGAGGTGATTCTCCGATTTAAAACTTCCTGGCAACGTGCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCAAAGGAGCTTAACTTCTGTGTTCGGCa < 2:17209/141‑1 (MQ=14) aCCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTACGATTTAAAACTGCCTGGCAACGTTCTACTTTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGa < 1:270236/141‑1 (MQ=255) ccTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAAc < 2:164932/141‑1 (MQ=255) ttGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGtgtg < 1:48004/141‑1 (MQ=255) tGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGa < 1:29731/141‑1 (MQ=255) cccAGCTGAGCTAATTCTCCGATTTAAAAGTGCCTTGCAACGTTCTACTCTAGCGGAACGTAAGTTCTACAACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCa > 2:265614/1‑141 (MQ=255) cccAGCTGAGCTAAGTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCa < 2:78693/141‑1 (MQ=255) | ACTGATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCA > USA300TCH1516_ALE/1998138‑1998393 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |