New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | USA300TCH1516_ALE | 2085296 = | 20 (0.810) | 10 (0.450) | 8/252 | 1.4 | 32.8% | coding (173/201 nt) | hlb_1 | Phospholipase C |
? | USA300TCH1516_ALE | = 2128343 | 23 (1.030) | coding (1/825 nt) | hlb_2 | Phospholipase C |
CATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAA > USA300TCH1516_ALE/2128207‑2128479 | cATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACCAAGATTTTAGAAAGTATGTAATTTAGGGACACATTAGGGACTCCAAACCCAATAAATAATGTTGTTACAAGGTTTCTCtgta < 2:48200‑M2/141‑5 (MQ=255) tCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatc > 1:227373‑M2/1‑135 (MQ=255) gtgtATTCTTATTTTTTAGAAGAAAAATTTAATGAAGAGAACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaa > 1:160899‑M2/1‑132 (MQ=255) tgtATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGAGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaa < 2:110577‑M2/141‑11 (MQ=255) tttGTTAGAAGAAAAATTTAAGGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCaa < 2:11976/141‑1 (MQ=255) tGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagactttt > 1:239447‑M2/1‑119 (MQ=255) gTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAatat > 1:274416/1‑141 (MQ=255) tttAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagccttttaacataaaattact < 2:126745‑M2/141‑37 (MQ=255) attAATGAAGAGGACAAAAAAAAAACTAAAATTTTAGAAAGTATGTAATTTAAGGACCCATTAGGGACTCCAAACCCAATAAGTACTTTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGAtt < 2:226474/140‑1 (MQ=255) aaaaaaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagactttcaacataaaattacttatccttcaaaaagt < 2:239909‑M2/141‑52 (MQ=255) aaaCAAATAAAATATTAGAAAGTATGTAATTTAGGGAGCCATTAGGGACTGCAAACGCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaa > 2:13762‑M2/1‑86 (MQ=255) caacTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTACTCGGACAATCTTCTTctat > 2:220084/1‑141 (MQ=255) acTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAGTCTTGGTATATTa > 1:37871/1‑141 (MQ=255) tAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcata > 1:112411‑M2/1‑79 (MQ=255) tAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcata > 1:83368‑M2/1‑79 (MQ=255) tAAAATTGTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcata > 1:85226‑M2/1‑79 (MQ=255) aaaTTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTaaaaa > 1:171350/1‑141 (MQ=255) aaaTTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAAAATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTaaaaa > 1:234960/1‑141 (MQ=255) tGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataac > 2:224359‑M2/1‑62 (MQ=255) tAATTTAGGGACCCATTAGGGACTCCAAACCCAGTAAATACTGTTGTTACAAGGTTTCTAGGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAatat > 2:81278/1‑141 (MQ=255) tAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAatat > 2:28985/1‑141 (MQ=255) tAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATAATGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAAAGCCACAACATAACCGGACAATCTTCTTATATTAAAAATAATGATGTAGTTatct > 2:277014/1‑139 (MQ=255) aaTTTAGGGACCCATTAGGGAATCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATAtt > 1:249494/1‑141 (MQ=255) aaTTTAGGGAACCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTCtgtatcccacctggagacttttaacataaaattaattatcatgccatctgtcaaactgcctaacatcaaggtttataacttt > 2:265714‑M2/1‑59 (MQ=255) aCCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGc > 1:68765/1‑141 (MQ=255) cccATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCa > 2:266036/1‑141 (MQ=255) cccATTAGAGACTCCAAACCCAATAAATACTGTTGTTACAAGGTATCTATGTATCCAAACTGGCGTAATTATAAAGACGCTGATTTAATCAAACAATCTTCTTATATTAAAAATAATGATGACGTAATATTCAATGAATCa > 2:2876/1‑141 (MQ=255) aTTAGTGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCAttt < 1:110577/141‑1 (MQ=255) cTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGACGCATTTAATAATgg > 2:270758/1‑141 (MQ=255) tCCAAACCCAATAAATACTGTTGTCACCAGGGGTGTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGt < 2:70917/141‑1 (MQ=255) ataCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGTTGCATCAGACAAatt > 2:56413/1‑141 (MQ=255) ataCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAatt > 1:174837/1‑141 (MQ=255) ataCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAatt > 1:46118/1‑141 (MQ=255) ataCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAAGATTCAATGAAGCATTTGATAATGGTGCATCAGACAAgtt > 2:50450/1‑141 (MQ=255) tttGTATGTATGCAAAGTGGGTGCAATATAAACGCGCTGATTTAATCGGACAATCTTGTTATATTAAAAATAATGATGTCGTAATATTCAAGGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGaaga < 2:281713/141‑3 (MQ=255) tttCGATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGaaaa < 2:200691/141‑1 (MQ=255) ttCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaatttgagggactttttagggac < 1:79361‑M2/141‑137 (MQ=255) | CATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAA > USA300TCH1516_ALE/2128207‑2128479 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |