New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2679952 =329 (0.900)6 (0.020) 5/230 NT 2.2% intergenic (+4/+756) ssaA2_4/USA300HOU_RS13810 Staphylococcal secretory antigen ssaA2/hypothetical protein
?USA300TCH1516_ALE 2680007 = 245 (0.760)intergenic (+59/+701) ssaA2_4/USA300HOU_RS13810 Staphylococcal secretory antigen ssaA2/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 102 total aligned reads displayed.

TAGATTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/2680104‑2679952
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgatagaagtttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAA  >  USA300TCH1516_ALE/2680007‑2680145
                                                                                                                                                                                                                                                                                                    
TAGATTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTG                                                                                                                                                         >  2:565827/1‑141
 AGATTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGTAAATTGAAGCGTTCGTGA                                                                                                                                                        >  2:2502831/1‑141
 AGATTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGA                                                                                                                                                        <  2:2686223/141‑1
   ATTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATA                                                                                                                                                      <  1:1253578/141‑1
    TTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATGTACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAG                                                                                                                                                     <  1:1315252/141‑1
    TTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAG                                                                                                                                                     <  2:4044331/141‑1
    TTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAG                                                                                                                                                     <  2:3642464/141‑1
    TTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAG                                                                                                                                                     <  2:2929808/141‑1
    TTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAG                                                                                                                                                     <  2:1337315/141‑1
    TTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAG                                                                                                                                                     <  1:3601202/141‑1
    TTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAG                                                                                                                                                     <  1:284727/141‑1
    TTATGCGAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAG                                                                                                                                                     <  2:2175929/141‑1
    TTATGACAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAG                                                                                                                                                     <  2:379948/141‑1
     TATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGA                                                                                                                                                    <  1:3305607/141‑1
     TATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGA                                                                                                                                                    <  1:3973146/141‑1
       aGCTAAACAAAAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAG                                                                                                                                                  <  1:2035192/140‑1
       TGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAG                                                                                                                                                  >  1:51124/1‑141
       TGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAAGAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATATAAG                                                                                                                                                  >  2:2434919/1‑141
       TGCTAAAGAGGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAG                                                                                                                                                  <  1:3196838/141‑1
        GCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGT                                                                                                                                                 <  2:1565053/141‑1
        GCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGT                                                                                                                                                 >  1:4316230/1‑141
        GCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGATCGTGATAGAAGT                                                                                                                                                 >  1:1290410/1‑141
        GCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTGCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGT                                                                                                                                                 >  1:3694197/1‑141
         CTAAATATAGAATAATAGTTGAAGAAGAAATATAAGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTT                                                                                                                                                <  2:3079375/141‑1
         CTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGTAAATTGAAGCGTTCGTGATAGAAGct                                                                                                                                                >  2:3080474/1‑139
         CTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAACTTGAAGCGTTCGTGATAGAAGTT                                                                                                                                                >  2:859245/1‑141
         CTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTT                                                                                                                                                >  1:4209358/1‑141
         CTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTT                                                                                                                                                >  1:2106958/1‑141
         CTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTT                                                                                                                                                >  1:3924727/1‑141
         CTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTT                                                                                                                                                >  1:3895271/1‑141
         CTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTAAAGCGTTCGTGATAGAAGTT                                                                                                                                                >  2:2768016/1‑141
         CTAAAAATGAAAGAAAAGTTGAAGAAGAAAGATACTTTCAATTACGACAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACTCGCATACAGGAAATTGAAGCGTTCGTGGTAGAAGTT                                                                                                                                                <  2:3230116/141‑1
          TAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACTGGCAATTGAAGCGTTCGTGATAGAAGTTT                                                                                                                                               >  2:2881269/1‑141
          TAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTT                                                                                                                                               <  1:3942559/141‑1
          TAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTT                                                                                                                                               >  2:3266665/1‑141
          TAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTT                                                                                                                                               >  2:2521549/1‑141
          TAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTT                                                                                                                                               >  2:2682725/1‑141
          TAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTT                                                                                                                                               <  2:3416483/141‑1
          TAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTT                                                                                                                                               >  1:666738/1‑141
          TAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTT                                                                                                                                               >  1:666716/1‑141
          TAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTACAGCGTTCGTGATAGAAATTT                                                                                                                                               >  2:2387841/1‑141
          TAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATAGAAACGTTCGTGATAGAAGTTT                                                                                                                                               >  2:2644891/1‑141
           AAAGATGAAATAATAGTTGAAGAAGAAATATAGGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATACAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTT                                                                                                                                              >  2:3900019/1‑141
           AAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAAGTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTT                                                                                                                                              >  1:3056875/1‑141
           AAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGACGCGTTCGTGATAGAAGTTTT                                                                                                                                              >  1:2881110/1‑141
           AAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTT                                                                                                                                              >  2:2854437/1‑141
           AAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTT                                                                                                                                              >  1:3802707/1‑141
           AAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTAAAGCGTTCGTGATAAAAGTTTT                                                                                                                                              >  2:2618895/1‑141
           AAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACAAGCATCCCGGACAGTGAAGCGTTCGTGATAGAAGTTTT                                                                                                                                              >  1:803083/1‑141
            aaaATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTT                                                                                                                                             <  2:1270779/138‑1
            AAGATTAAATAATAGTTCAAGAAGAAATATACGTTCAATGACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTT                                                                                                                                             <  2:2385166/141‑1
            AAGATGAAATAATAGTTGAAGAAGAAATATACTTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATAGCATTACATAAAATAAAAAGTTGGGTGACACGCACTCAGGAAATTGAAGCGTCCGTGATAGAAGTTTTT                                                                                                                                             <  2:2435506/141‑1
            AAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCCATTTGAAATTTGTAGAAGTACTAATTAAACAGCATAAAATAAAAGCATCGATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTT                                                                                                                                             >  1:1674522/1‑141
            AAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTT                                                                                                                                             >  2:712020/1‑141
                   AATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGATTTTATTTTAT                                                                                                                                      >  1:204701/1‑141
                       ATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTTTTTtttttt                                                                                                                                  >  2:597797/1‑135
                            TGAAGAAGAAATATACGTTCCATTAAGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACTCATACAGGAAATTGAAGCATTCGTGATAGAAGTTTTTATTTTATAAAATTATA                                                                                                                             >  1:3475309/1‑141
                                                                                  atTAATTTCAGAAAATAAAAACTTCTATCACGTGTATACAGGAAATTGAAGTGTTTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCA                                                                       <  2:3475309/139‑1
                                                                                           attAAATAAAAACTTCTATTATATGCATAAAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATT                                                              <  2:204701/138‑1
                                                                                           ATAAAATAAAAACTTCTATCAAACTTATACTGGAAATTGAAGCGTTCGTGATNGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATT                                                              <  2:2521195/141‑1
                                                                                                     AACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAG                                                    >  1:608061/1‑141
                                                                                                                                        gttTGATAGAAGTTTTTATTTTATGAAATTATATTATGACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTA                 <  2:4326791/138‑1
                                                                                                                                          tTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAA               <  2:3233018/140‑1
                                                                                                                                           TGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAGTCTATATATAAAATTTTATGCTATTATTTAAAT              >  2:2897914/1‑141
                                                                                                                                            GATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATA             <  1:3080070/141‑1
                                                                                                                                             ATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTATCATAATCTATATATAAAATTTTATGCTATTATTTAACTAt            >  1:3942996/1‑140
                                                                                                                                              TAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAAT           >  1:3091229/1‑141
                                                                                                                                              TAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAAT           >  2:3520264/1‑141
                                                                                                                                              TAGAAGTTTTTATTTTATGAAATTATATTATTACTCCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAAT           <  2:4114678/141‑1
                                                                                                                                               AGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTCTATCCTGCATTGTATGCTATTATTTGAATAATT          <  2:2032372/141‑1
                                                                                                                                               AGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATT          <  2:2875745/141‑1
                                                                                                                                               AGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATT          <  2:1864527/141‑1
                                                                                                                                                gtatgTTTTCTTTTTTGTCATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTC         <  2:4009705/136‑1
                                                                                                                                                GAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTTCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTC         <  2:4004607/141‑1
                                                                                                                                                GAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTC         >  1:1238338/1‑141
                                                                                                                                                 AAGTTTTTATTTTATGAAATTATATTATTACTTCTTCAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCG        <  2:3647700/141‑1
                                                                                                                                                 AAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCt        >  2:4060649/1‑140
                                                                                                                                                 AAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCG        <  2:1840725/141‑1
                                                                                                                                                  AGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATCTAAAATTTTATTCTTTTATTTAATTAATTCtt       >  2:861291/1‑139
                                                                                                                                                  AGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGC       <  1:477709/141‑1
                                                                                                                                                  AGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGC       <  1:2200971/141‑1
                                                                                                                                                   GTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCT      <  1:1817301/141‑1
                                                                                                                                                   GTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCT      <  1:1280070/141‑1
                                                                                                                                                   GTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCT      <  2:4171621/141‑1
                                                                                                                                                   GTTTTTATATTATGAGAATATATTATTACTTCTAAAAATTTCAAATTGCCATAATTGAACGTATATTTCTTCTTCAAATATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTAGTATTTAAATAATTCGat      <  2:3352550/141‑3
                                                                                                                                                    tgtgTATTGTATGAAATTATATGATTACTTCTACAAATTTCAAATTGTCGTAATTGAATGTATATTTCTTATTCAACTATTGTGTCATCTTTGGCATAATCTAGATATAAAATTTTATGCTATTATTTAAATAATTCGCTA     <  2:1597047/137‑1
                                                                                                                                                    tgTTTATTTTATGATATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTA     <  2:1081218/139‑1
                                                                                                                                                    TTTTTATTTTATTAAATTATATTATTACTTCTACATATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTACATAATTCGCTA     <  2:1621825/141‑1
                                                                                                                                                    TTTTTATTTTATGAAATTATTTTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTA     <  2:489193/141‑1
                                                                                                                                                    TTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGTCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTA     <  2:1437916/141‑1
                                                                                                                                                    TTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCTGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTA     <  2:3477452/141‑1
                                                                                                                                                    TTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTTAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTA     <  2:496586/141‑1
                                                                                                                                                    TTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTTTTTTTCAATTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTA     <  2:3828780/141‑1
                                                                                                                                                    TTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTA     <  2:1908658/141‑1
                                                                                                                                                    TTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTA     <  1:2662126/141‑1
                                                                                                                                                     TTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATATTTAGCTAT    >  2:1247874/1‑141
                                                                                                                                                     TTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTAT    <  2:318493/141‑1
                                                                                                                                                      TTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATA   <  1:4399290/141‑1
                                                                                                                                                      TTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATA   <  2:637986/141‑1
                                                                                                                                                       TTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAA  >  2:3924180/1‑141
                                                                                                                                                                                                                                                                                                    
TAGATTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/2680104‑2679952
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgatagaagtttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAA  >  USA300TCH1516_ALE/2680007‑2680145

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.