| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 618,567 | T→C | 5.3% | D1223D (GAT→GAC) | sdrD → | Serine‑aspartate repeat‑containing protein D |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 618,567 | 0 | T | C | 5.3% | 930.2 / 8.3 | 398 | D1223D (GAT→GAC) | sdrD | Serine‑aspartate repeat‑containing protein D |
| Reads supporting (aligned to +/- strand): ref base T (172/181); new base C (25/4); total (207/191) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.11e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 439 total aligned reads displayed.
GATAGCGACTCAGATTCAGACAGCGACTCAGATTCAGACAGCGACTCAGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTC > USA300TCH1516_ALE/618427‑618707 | gattccgacgccgattcagaccgcgactcagattcagacagCGACTCAGCCTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACtcagat < 1:893017/136‑1 (MQ=17) agcgactcagataccgacagtgacgcagattcagacAGCGACTCAGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACtcagattca < 2:2924484/141‑1 (MQ=255) cgattcagactcagatagcgactcagactcagacagCGACTCAGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACtcagattcaga < 1:3998246/141‑1 (MQ=255) gactcagattcagacagcgactcagattcagacagcGACTCAGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGACTCAGACGGCGACTCAGACTCAGAGAGCGACTCAGACACAGAAAGAGAAtcagagtcagaa > 2:2687674/1‑140 (MQ=14) ctcagattcagacagcgactcagattcagacagcgaCTCAGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAg < 1:3615634/141‑1 (MQ=255) cagactcagacagcgactcagattcagacagcgactCAGAATCAGACAGTTGTTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCg < 1:825142/141‑1 (MQ=14) agattcagacagcgactcagattcagacagcgactcAGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGa > 1:3546315/1‑141 (MQ=255) agattcagacagcgactcagattcagacagcgactcAGACTCAGATAGTGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGAATCAGCCTCAGACGGCGAATCAGACTCAGAGAGCGACTCAGCATCAGAGAGCGa > 2:3314270/1‑141 (MQ=14) ttcagacagcgactcagattcagacagcgactcagaCTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTc < 1:3712634/141‑1 (MQ=255) tcagacagcgactcagattcagacagcgactcagaCTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCa > 1:2826081/1‑141 (MQ=255) agacagcgactcagattcagacagcgactcagaCTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGa < 1:1058963/141‑1 (MQ=255) gcgactcagattcagacagcgactcagaCTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGGGACGCAGACGCAGAGGGCGACGCAGGCTCAGATAGTGACTCAGAGTGAGATAGCGACTCAGATTggg > 1:3065423/1‑141 (MQ=17) cgactcagattcagacagcgactcagaCTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGa > 1:2730658/1‑141 (MQ=255) ctcagattcagacagcgactcagaCTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAg < 1:3347792/141‑1 (MQ=255) ctcagactcagacagcgactcagaCTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAg < 1:4187087/141‑1 (MQ=255) tgagattcagagagagaatgagaTGAAGAGAGTGAGTGAGACTCAGATGGCGACGCAGATTCAGAGCGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGc < 2:656412/139‑1 (MQ=14) tcagattcagacagcgactcagaCTCAGATAGTGCCTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGCGACTCAGACTCAGAGAGCGACTCAGCTGCAGACaac > 2:185440/1‑139 (MQ=14) tcagattcagacagcgactcagaCTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCGGACGGCGACTCAGAGTCGGATAGCGACTCGGAGTCGGAGAGTCACTCAGACGCGGATAGCGAGCCAGAGTCGGACGGc > 2:2138262/1‑141 (MQ=14) tcagattcagacagcgactcagaCTCAGATAGTGACTCAGACTCAGATAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCCACTCAGACTcagctacc > 2:833053/1‑134 (MQ=11) attcagacagcgactcagaCTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGAtt > 1:1578392/1‑141 (MQ=255) agacagcgactcagaCTCAGATAGTGATTCAGACTCAGATAGAGACTCAGATTCAGACAGCGACACAGACTCAGACAGCGACTCAGACTCACAGAGGGCCACGGATTCACATAACGACACAGACTCGGAAAGCGAGTCAGa > 2:856971/1‑141 (MQ=17) cagcgactcagaCTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTc < 1:1296659/141‑1 (MQ=255) agcgactcagaCTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGCTAGCGACTCAGATTCGGACAGCGATTCAGACTcc > 1:1525637/1‑140 (MQ=255) agcgactcagaCTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCa > 1:318507/1‑141 (MQ=255) gactcagactcaGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTGAGACTCAGACAGCGACTCAGACTCAGACAGTGACTCAGATTCAGATAGAAACTCAAACACGCACAGCGATTCAGACTGAGAt > 2:2380601/1‑141 (MQ=14) gactcagactcaGATAGTGATTCAGACTCAGATAGCGACCGAAAGACAGACAGGGACTGAGACAGAGACAGCGACAGAGAATAAGACAGTGACCGCGATACCGATAAAGACACAGACTCAGACAGCGACACAGACTCAGac > 2:1477343/1‑140 (MQ=2) ctcagactcagaTAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAg < 1:3933796/141‑1 (MQ=255) ctcagactcagaGAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAg < 1:2110519/141‑1 (MQ=255) cagacacagacaGTGAGTCAGACTCAGATAGCGACTCAGATTCAGACCGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCg < 1:377990/141‑1 (MQ=255) aagactaagaTAGTGATTCAGATTCAGATAGCGTCTCAGATTCAGACAGTGACTCAGACTCAGACCGCGACTCAGACTCAGATAGTGTCTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCg < 2:4284405/140‑1 (MQ=14) tacctccgaTAGAGATATCGACTCAGATAGCGACTGCGATTCAGACAGCGACTCAGAGTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGa < 2:3228994/138‑1 (MQ=14) gactcagaTAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGAc < 1:3437198/141‑1 (MQ=255) gactcagaTAGCGATTCAGACTCAGCTTCCGACTCAGATTCAGACAGCGACTCAGATTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGAc < 2:1209099/141‑1 (MQ=14) ctcagaTAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACtc < 1:1170/141‑1 (MQ=255) cagaGAGTGATTCAGACTCAGATAGAGACTCAGATTCAGACAGCGAAACAGACTCAGACAGCGACGAAGACTCAGAAAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACtcag < 1:602016/141‑1 (MQ=14) tAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTAAGGTAGCGACtcagattg > 1:4132331/1‑140 (MQ=255) gTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGACTCAGAGTCAGATAGCGACTCAGATTCGGACAGCGATCCAGACTCAGATAGCAACtcagattcag > 2:2755364/1‑141 (MQ=255) ttCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAg < 1:3299042/141‑1 (MQ=255) ttCAGACTCAGATAGCCACTCAAATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAg < 1:4305943/141‑1 (MQ=255) ttCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAg < 1:807526/141‑1 (MQ=255) tCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGc > 1:3242920/1‑141 (MQ=255) caagacgaGATAGGTATTCAGATTCATACAGAGACGAAGACTCGGACAGGGACTCAGACTCAGATAGTGACTCAGATGCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCg < 2:3116140/134‑1 (MQ=14) gACTCAGATAGTGACTCAGATTCAGACAGCGACTCAGACTCAGACATCTACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGAt < 1:771104/141‑1 (MQ=255) aCTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGCTTCATAGTTATTTTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGAtt < 1:1031456/141‑1 (MQ=14) aGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGa < 1:3883343/141‑1 (MQ=255) aGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGAGTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGa < 1:2351953/141‑1 (MQ=255) gATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGAc < 1:3489939/141‑1 (MQ=255) aaGCGACATAGACGCAGACAGCGAAGTAGCTTCATAGAGACACTCAGACTCAAATGGTGACGAAGATTCAGATATCGACTTAGATTCGGACAGCGAATAATATCCAGCCACCAACGCTTATTCAGATAGCGATTCGGACTc < 2:2021511/140‑1 (MQ=2) gCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAg < 1:2901239/141‑1 (MQ=255) gtCAGAGTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAg < 2:3519014/140‑1 (MQ=255) ctaaGATTGAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAg < 2:1022017/138‑1 (MQ=255) cTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAg > 1:3968393/1‑141 (MQ=255) ggcttCAGACAGCGACGCAGCCTCAGCCAGAGACTCAGCCTCAGACCGCGACACAGCTTCAGATCGCGCCTCCGGCTCGGACAGCGAGTCAGACTCAGATAGCGCCCGGGCATCGGAGAGCGATTCGGACTCAGATAGCGa < 2:3847839/138‑1 (MQ=12) agagTCAGACAGCGACACAGAGTCAGACAGCGACTCAGACTTAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGa < 2:3405037/141‑1 (MQ=255) aTTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCgccc > 1:1412986/1‑138 (MQ=255) aTTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACt > 1:56057/1‑141 (MQ=255) tcagacagcgactcagactcagacagcgactcagacTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtca < 1:246623/141‑1 (MQ=255) cagtcagcgactcagactcagacagcgactcagactCAGATAGTGACGCAGAGTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCTATTCGGACTCAGATAGCGACtcag < 1:4046365/141‑1 (MQ=255) cagacagcgactcagactcagacagcgactcagactCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGGCAGCGATTCAGACGCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcag > 1:1450641/1‑141 (MQ=255) cagacagcgactcagactcagacagcgactcagactCAGATAGCGACTCAGACTCAGCTAGCGACTCAGACTCGGCCAGCGAATCAGACTCACATAGCGACTCAGAACCATCTAGCGAGTCGGAATCAGCTAGCGagacaa > 2:1609957/1‑136 (MQ=11) agacagcgactcagactcagacagcgactcagactcAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcaga < 1:2264117/141‑1 (MQ=255) gacagcgactcagactcagacagcgactcagactcaGATAGTGACTCAGACTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGACCCAGATAGCGAAtcagca > 2:2284007/1‑139 (MQ=14) aacagcgactcagaatcagacagcgactcagacacagATAGTGGCTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcagat < 1:648106/140‑1 (MQ=255) cagcgactcagactcagacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcagattc > 1:3903976/1‑141 (MQ=255) cagcgactcagactcagacagcgactcagactcagaTAGTGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACCCAGATTCAGATAACGAATCGCACCCAGATAGCGACtccgaggg > 1:2708089/1‑138 (MQ=14) cagcgacgcagacacagacagcgactccgactcagaTAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcagattc < 1:3470356/141‑1 (MQ=255) agcgactcagactcagacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGCTTCAGATAGCGATTCGGACTCAGATAGCGACtcagattca > 1:1206971/1‑141 (MQ=255) agcgactcagactcagacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcagattca > 1:1964497/1‑141 (MQ=255) agcgactcagactcagaaagcgacgcagactcagaCAGAGAATCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcagattca < 2:4391889/141‑1 (MQ=14) gcgactcagactcagacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGCTAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcagagtccg > 1:409911/1‑139 (MQ=255) ctcagactcagacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAg < 1:185440/141‑1 (MQ=255) cagactcagacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCCGACAGCGATTCAGACTCAGATAGCGACTGAGATTCAGATAGCGATTCCGACTCAGATAGCGACTCAGACTCAGATAgcg > 2:1571969/1‑139 (MQ=255) aaactcagactgcgattcagattcagaTAGTGATTCAGATTCAGATAGCGACACAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGa < 1:1145315/139‑1 (MQ=14) agacagcgtctcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGa < 1:2504493/141‑1 (MQ=255) agacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGAGACAGTTAGTGGTTCAgg > 1:1658683/1‑140 (MQ=255) agacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCACACTCAGATAGCGACTCAGAACCACATAGTGATTCAgg > 2:1326444/1‑140 (MQ=17) gacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGAc < 1:2207852/141‑1 (MQ=255) cagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTc < 1:4218066/141‑1 (MQ=255) agcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCa > 1:480438/1‑141 (MQ=255) cgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGa > 1:2988786/1‑141 (MQ=255) gactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGAt > 1:1551197/1‑141 (MQ=255) gtcagaatgagaCAGCGACTGAGATTCAGACAGCGACACAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGATTCAGATAGCGACTCAGATTTAGATAGTGATTCAGACTCAGATAg < 2:301203/140‑1 (MQ=11) ctcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAg < 1:975633/141‑1 (MQ=255) tcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGc > 1:724088/1‑141 (MQ=255) cagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGGTAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCg > 1:2598506/1‑141 (MQ=255) gactcagaTAGTGACTCAGATTCAGAGAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGAc < 1:2941711/141‑1 (MQ=255) tcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCa > 1:1947326/1‑141 (MQ=255) aTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGACACAGATAGCGACGCAGacc > 2:396501/1‑139 (MQ=11) tAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTc < 1:4249858/141‑1 (MQ=255) tAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATACAGAAAGTGATTCAGACAGAGAAAGCGACTCAAAtac > 2:2806689/1‑139 (MQ=14) tAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGAGATTCAGACTGAGAAAGCGACTCAGATTCAGAGAGCGACTCGGACTCAGCTAGCGGATTAGAATGAGATAGCGATTCACACCCCGCCAGCGACTCAGaagc > 2:4175406/1‑138 (MQ=2) agagACGCAGCTTCAGATAGAGACTGAGATTCAGACAGCGATGCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCa < 2:1655452/138‑1 (MQ=14) aGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTGAGATCGTGATTCAGCCTCAGATAGCGCGTCAGATTcc > 1:1608749/1‑140 (MQ=14) aGTGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGTGATCCACACACTGATAGCAAAACAGACTCa > 2:1081338/1‑141 (MQ=11) gTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGTGATTAAGAATCAGCGAGCGACGCAgcgtcaa > 2:557802/1‑135 (MQ=11) tGACTCAGATTCAGATAGCGACTCAGATTCGGACAACGGTTCAAACTGAGAGAGCGACTCAGATTCAGATAGCGATTCTGAATAACGGAAGGGCGCAGATTCAGAAAACGATTCAGACACGGATAGCGACCCCGGTTCAGa > 2:729140/1‑141 (MQ=2) attcagatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACt > 1:2422044/1‑141 (MQ=255) attcagatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCACACTCAGATAGCGCCACAGATTCACACCGCGAcc > 2:2547596/1‑140 (MQ=17) attcagatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGATAGCGACTCAGACTCAGACAGAGAca > 2:3181280/1‑140 (MQ=255) attcagatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGATAGCGATTAGGACTCAGATAGCGACTCAGATACAAATAGTGATTCACACTCAGATAGCGCCCCAGAATCACCCAGAGAcg > 2:367154/1‑140 (MQ=14) | GATAGCGACTCAGATTCAGACAGCGACTCAGATTCAGACAGCGACTCAGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTC > USA300TCH1516_ALE/618427‑618707 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |