| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 618,621 | T→C | 5.1% | D1241D (GAT→GAC) | sdrD → | Serine‑aspartate repeat‑containing protein D |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 618,621 | 0 | T | C | 5.1% | 970.4 / 7.9 | 404 | D1241D (GAT→GAC) | sdrD | Serine‑aspartate repeat‑containing protein D |
| Reads supporting (aligned to +/- strand): ref base T (193/173); new base C (23/3); total (226/178) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.33e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 427 total aligned reads displayed.
TAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAG‑ATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGACTCAGACTCGGATAGTGATTC > USA300TCH1516_ALE/618483‑618761 | tAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAG‑ATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTAAGGTAGCGACtcagattg > 1:4132331/1‑140 (MQ=255) gTGATTCCGACTCAGATAGCGACACAGATTCAGACAGCGCCTCAGACTCAGACAGC‑AATAACCCGGAGAAGAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACtcagattcag < 1:3231310/141‑1 (MQ=14) tGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAG‑ATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACtcagaatcaga > 1:2585245/1‑141 (MQ=255) ttCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAG‑ATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAg < 1:737784/141‑1 (MQ=255) ttCAGACTCAGATAGCCACTCAAATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAG‑ATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAg < 1:4305943/141‑1 (MQ=255) tCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAG‑ATAGTGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGAATCCGACACAAATAGAGAATCAGATTAAGATAGc > 2:3945056/1‑141 (MQ=14) caagacgaGATAGGTATTCAGATTCATACAGAGACGAAGACTCGGACAGGGACTCAGACTCAG‑ATAGTGACTCAGATGCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCg < 2:3116140/134‑1 (MQ=14) aGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAG‑ATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGa < 1:1988228/141‑1 (MQ=255) gACTCAGATCGCGACTCCGAGTCAGACAGCGACTCAGACTCAGCAAGCGCCTCAGACTCAG‑ATAGTGACTCAGATTCAGATAGCGACTCAGATTCCGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGAt < 1:1438954/141‑1 (MQ=14) gACGCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAG‑ATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGAt < 1:3912766/141‑1 (MQ=255) aCTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAG‑CTTCATAGTTATTTTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGAtt < 1:1031456/141‑1 (MQ=14) aCTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAG‑ATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGagt > 1:2183413/1‑139 (MQ=255) aCTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAG‑ACAGTGACTCAGACTCAGATAGCGACTCAGACTCGGAAGGAGAGGAGGGCTCAGGTAGCGACTCAGATTCAGATGGAGAtt > 1:116908/1‑141 (MQ=14) aGATAGCGACTCAGATTCAGACGGAGACTGAGACTCAGACAGCGACTCAGACTCAG‑ATAGTGATTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGa < 2:2763654/141‑1 (MQ=14) gATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAG‑ATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGAc < 1:3489939/141‑1 (MQ=255) tAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAG‑ATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTc < 1:2902376/141‑1 (MQ=255) tAGAGACTCAGATTTAGATAGAGAATCAGACTCAGACAGAGACTCAGATTCAG‑ATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTc < 2:2950040/141‑1 (MQ=14) aggCGACTCAGATTGAGACAGCGACGCAGACTCAGACAGCGACTCAGACTCAG‑ATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTc < 2:849523/139‑1 (MQ=255) gtCAGAGTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAG‑ATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAg < 2:3519014/140‑1 (MQ=255) cTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAG‑ATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAg > 1:3968393/1‑141 (MQ=255) cAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAG‑ATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCg < 1:3799148/141‑1 (MQ=255) agagTCAGACAGCGACACAGAGTCAGACAGCGACTCAGACTTAG‑ATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGa < 2:3405037/141‑1 (MQ=255) aGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAG‑ATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGa > 1:975768/1‑141 (MQ=255) gATTCAGCGCGCGAAGCAGACACAGACAGCGACACAGAATCAG‑ATAGAGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGAc < 2:2401498/141‑1 (MQ=14) aTTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAG‑ATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACt > 1:602051/1‑141 (MQ=255) aTTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAG‑ATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGAGTCAGACTCAGATAGCGCCTCAGAATCACATGGCGATTCGAACTCAGATAgagccc > 2:1588704/1‑136 (MQ=11) cagacagcgactcagactcagacagcgactcagactCAG‑ATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcag < 1:4001808/141‑1 (MQ=255) agacagcgactcagactcagacagcgactcagactcAG‑ATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcagg > 1:2726167/1‑140 (MQ=255) agacagcgactcagactcagacagcgactcagactcAG‑ATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcaga < 1:2820873/141‑1 (MQ=255) agacagcgactcagactcagacagcgactcagactcAG‑ATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcaga < 1:3313265/141‑1 (MQ=255) gacagcgactcagactcagacagcgactcagactcaG‑ATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcagat > 1:3078000/1‑141 (MQ=255) caagcgactcagactcagacagcgactcagactcag‑aTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcagagt > 1:1931176/3‑139 (MQ=255) gcgactcagactcagacagcgactcagactcag‑aTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGCTAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcagagtccg > 1:409911/1‑139 (MQ=255) cgactcagactcagacagcgactcagactcag‑aTAGTGACTCAGATTCAGATAGCGGCGCGGCTTCGGACGGCGATTCAGACTCAGATAGCGAATCATATTCAGATAGCGATTCGGACTCAGATCGAGACtcaggttcaga > 2:2731457/1‑141 (MQ=17) cgactcagactcagacagcgactcagactcag‑aTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcagattcaga > 1:3876663/1‑141 (MQ=255) cgcgcgcagccagcgactcagactcag‑tGAGAGACTCAGACTCAGATAGCGACTCAGACTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTg < 2:2121970/135‑1 (MQ=14) agactcagacagcgactcagactcag‑aTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGa < 1:2313169/141‑1 (MQ=255) gactcagacagcgactcagactcag‑aTAGTGCATCACACCCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGAATCAGCTTCAGATAGCTACTCGTGCTCAAATAGCGTCTAAAATGCAAATAATGAt > 2:2021282/1‑141 (MQ=9) gactcagacagcgactcagactcag‑aTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATGCAGATAGTGAt > 1:2210714/1‑141 (MQ=255) gactcagacagcgactcagactcag‑aTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGAGTCAGATAGTGATTCGGAGTCAGATAGCGACTCAGAGTCAGAGCGTGag > 2:2233185/1‑140 (MQ=17) actcagacagcgactcagactcag‑aTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGAtt > 1:3277777/1‑141 (MQ=255) actcagacagcgactcagactcag‑aTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGAtt > 1:1556867/1‑141 (MQ=255) agacagcgtctcagactcag‑aTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGa < 1:2504493/141‑1 (MQ=255) agacagcgactcagactcag‑aTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGa > 1:3440900/1‑141 (MQ=255) gacagcgactcagactcag‑aTAGTGACTCAGATTCAGATAGCGACTCAGACTCGGACAGCGATTCCGACTCAGACAGCGACTCAGATTCAGATCGCGATACAGACTCCCATCGCGACTCAGACTCACATAGCGACTCAGAc > 2:1636390/1‑141 (MQ=14) cagcgactcagactcag‑aTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTc < 1:1541035/141‑1 (MQ=255) cagcgactcagactcag‑aTAGTGACTCAGATTCAGATAGCGACACAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTc < 1:3670590/141‑1 (MQ=255) agcgactcagactcag‑aTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCa > 1:2403047/1‑141 (MQ=255) agcgactcagactcag‑aTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGAATCAGATAGCGGTCGAGACACCGATAGAGACACAGATACAGATAGTGATTCAGaacca > 2:149055/1‑137 (MQ=17) gcgactcagactcag‑aTAGTGACTCAGATTCAGATAGCGACTCAGATTCGAACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATACTGATTCAGACTCAg > 1:2456417/1‑141 (MQ=255) cgactcagactcag‑aTAGTGACTCAGATTCAGCTCGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGAATCAGACGCAGATAGCGAATCAGATTCACATAGAGAAAGAGACTCaaa > 2:4359485/1‑139 (MQ=14) cgactcagactcag‑aTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGa > 1:2988786/1‑141 (MQ=255) cgactcagactcag‑aTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCCGACTCCGGTAGCGACTCCGGTTCAGGAAGTGATTTAGACTCAGa > 2:58645/1‑141 (MQ=17) gactcagactcag‑aTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGAAAGCGACTCAGACGAAGATAGCGCGTCAGACGCAGAt > 2:702402/1‑141 (MQ=14) cagactcag‑aTAGTGACTCAGATTCAGATAGCGACTCAGACTCGGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCAGACTCAGATAGCGACACAGACTCAGATAGCGATTCAGACTCAGATacag > 2:1744004/1‑138 (MQ=14) tgcag‑aTACTGACGCAGATTCAGACGGCGAGTGAGATTCGGAGAGCGATTCAGTGTTGTATGTGTACTCGGACTCAGAGAGCGACACGGACTCAGATAGCGGCTCAGAGTCAGATAGTGATTCAGACTCAGATAGCGACTc < 2:1373564/139‑1 (MQ=9) ctcag‑aTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTc > 1:3480570/1‑141 (MQ=255) aGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGAGCCTAAGAGGCAGAGAGTGATTCAGACTCAGATAGCGACTCAGATTCa > 1:822891/1‑141 (MQ=17) cTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAg < 1:908798/141‑1 (MQ=255) cTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGAGATTCAGACTCAGGTAGCGACTCAGATTCAGaaaa > 2:790929/1‑138 (MQ=14) agattcagatAGCCATTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGa < 2:1227644/141‑1 (MQ=255) attcagatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACt > 1:792262/1‑141 (MQ=255) attcagatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACt > 1:3538555/1‑141 (MQ=255) attcagatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGACTCAGATAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACt > 2:3062775/1‑141 (MQ=255) attcagatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCACACTCAGATAGCGCCACAGATTCACACCGCGAcc > 2:2547596/1‑140 (MQ=17) attcagatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGATAGCGACTCAGACTCAGACAGAGAca > 2:3181280/1‑140 (MQ=255) attcagatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGATAGCGATTAGGACTCAGATAGCGACTCAGATACAAATAGTGATTCACACTCAGATAGCGCCCCAGAATCACCCAGAGAcg > 2:367154/1‑140 (MQ=14) ttcagatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGGCAGCGACTc > 1:496101/1‑141 (MQ=255) ttcagatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTc < 1:3110691/141‑1 (MQ=255) tcagatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCa < 1:1348716/141‑1 (MQ=255) agatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGa > 1:42365/1‑141 (MQ=255) tAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTc > 1:4073174/1‑141 (MQ=255) aGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCACACAGCGACTCAGATTCg > 1:1135654/1‑141 (MQ=255) aGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTTCGATTCAGACAACGAAACAGATTCg > 2:3734169/1‑141 (MQ=14) gCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCgg > 1:2854010/1‑141 (MQ=255) cGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGa > 1:3734397/1‑141 (MQ=255) ctgaGAATCGGACAGCGATTCATGCTCAGATTTCTATTTATTTTCAGATAGCGATTCGGACTCAGATAGCGACTCAGACGCAGATAGAGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAg < 1:68323/138‑1 (MQ=17) cTCAGATTCGGACAGCGATGCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAg < 1:1595948/141‑1 (MQ=255) tCAGATTCGGATTGCGAGTCAGACTCAGATCGGGACTCAGATTCAGACAGCGATTCCGATTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGc < 2:1162295/141‑1 (MQ=14) tCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGc < 1:4259072/141‑1 (MQ=255) tCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGc > 1:2771707/1‑141 (MQ=255) agagTCAGACAGCGATTCAGCATCAGATCGCGACTCAGAGTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGa < 2:1868352/141‑1 (MQ=17) aGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCgc > 1:1386331/1‑140 (MQ=255) gATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCACACTCAGATAGCGACCCAGATTCACACAGCAACTCAGATTCAGATAGCgcc > 2:4220815/1‑139 (MQ=17) ttCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTc < 1:419375/141‑1 (MQ=255) tgggcggCGATTCAGACGCAGATAGCGACTCATATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAg < 2:383717/135‑1 (MQ=255) ggACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCGGACTCAGCTAGCGACTCAGAGTCAGATAGTGAATCAGACTCAGATAGCGACTCAGCTTCAGACAGCGACTCAAATACGAAAAGCGACTCAGa > 2:3328309/1‑141 (MQ=17) gACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGAt < 1:1614513/141‑1 (MQ=255) aGCGATGCAGGCTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCa < 1:2659086/141‑1 (MQ=255) tCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGc > 1:55917/1‑141 (MQ=255) tCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATCCAGACAGCGACTCAGATTCGAATAGCCACTCAGATAcagccagc > 2:4015358/1‑141 (MQ=17) aGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGa < 1:1744485/141‑1 (MQ=255) gACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGACTCAGACAGCGACTCAGACTCCGATAGCAACTCAGACACAAACAGCCAc > 2:3259055/1‑141 (MQ=14) cTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGACTc < 1:2954121/141‑1 (MQ=255) cTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGAGTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGACTc < 1:867571/141‑1 (MQ=255) tCAGATAGCGACTCAGATTCAGATAGCGATTCAGATTCTGGTGGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGACTCa < 1:1206228/141‑1 (MQ=17) cAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGACTCAg < 1:4403419/141‑1 (MQ=255) ttgCGACTGGGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGACTCAGACTc < 2:4100092/139‑1 (MQ=255) cGACTCAGATTCAGATTGCGGTTCTTACACAGCTTGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGACTCAGACTCGGa < 2:489906/141‑1 (MQ=18) gattcagatAGCGAGTCGGACTACGACAGCGACTCAGAGTCATATAGGGATACAGGCTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGACTCAGACTCGGATAGTGAt < 2:865869/141‑1 (MQ=17) | TAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAG‑ATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGACTCAGACTCGGATAGTGATTC > USA300TCH1516_ALE/618483‑618761 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |