Predicted mutation
evidence seq id position mutation freq annotation gene description
RA USA300TCH1516_ALE 1,435,065 C→G 10.3% A141G (GCT→GGT)  dapH → 2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑acetyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE1,435,0650CG10.3% 752.3 / 18.4 269A141G (GCT→GGT) dapH2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑acetyltransferase
Reads supporting (aligned to +/- strand):  ref base C (85/147);  new base G (29/2);  total (114/155)
Fisher's exact test for biased strand distribution p-value = 5.81e-10
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 276 total aligned reads displayed.

AATTGAACCAGGTGCGTTTATTAGAGAACAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACGTGTT  >  USA300TCH1516_ALE/1434925‑1435204
                                                                                                                                            |                                                                                                                                           
taTTTAACAAGTTGCTTTTATTAGAGAACAAGCCATTATTGAAGATTGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGc                                                                                                                                             <  2:73632/140‑1 (MQ=255)
aaTTGAACCAGGTGCGTTTATTAGAGAACAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGc                                                                                                                                             <  1:1239927/141‑1 (MQ=255)
     aaCCAGGTGCGTTTATTAGAGAACAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACaa                                                                                                                                        >  1:2789828/1‑141 (MQ=255)
      aCCAGGTGTGTTTATTAAAGAACAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAAc                                                                                                                                       <  1:2628969/141‑1 (MQ=255)
            tacGTTTAATAAAGAAAAAGACATGATTGAAGGGAGTGGCGTCCTGATGATTGGCGGAAAAATTAATATTGGTGCAGTTGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTaa                                                                                                                                 <  2:3118924/139‑1 (MQ=255)
                 ttattaGAGAACAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATg                                                                                                                            <  1:2027263/141‑1 (MQ=255)
                  tattaGAGAACAAGCGATGATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGt                                                                                                                           <  1:2251551/141‑1 (MQ=255)
                    ttaGAGAACAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTAc                                                                                                                         >  1:879200/1‑141 (MQ=255)
                    ttaGAGAACAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTAc                                                                                                                         >  1:263556/1‑141 (MQ=255)
                        agaACAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGt                                                                                                                     <  1:3367208/141‑1 (MQ=255)
                         gaACAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAGTGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTa                                                                                                                    >  1:4321006/1‑141 (MQ=255)
                         gaACAAGCCATTATTGAAGATGGAGCTGACCATCTGATGTGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTa                                                                                                                    >  1:1917573/1‑141 (MQ=255)
                             aaGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAgggg                                                                                                                <  1:3578510/141‑1 (MQ=255)
                             aaGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAgggg                                                                                                                <  1:1066410/141‑1 (MQ=255)
                               gCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCt                                                                                                              <  1:3286771/141‑1 (MQ=255)
                                ccATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACCACTGGTAAAAATGTACATGTAGGGGCTg                                                                                                             >  1:584903/1‑141 (MQ=255)
                                ccATTATTGAAGAGGGTGACAAAATTTAGATGTTCGCAACAATTAATATTGGCCCAGTCGGTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTg                                                                                                             <  1:1861635/141‑1 (MQ=255)
                                  agtattGAAGATGGGGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTggt                                                                                                           <  1:1742072/139‑2 (MQ=255)
                                   ttattGAAGATGTGTCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCGCTACCACTAATAAAAATATACATGTAGGGGCTGgcg                                                                                                          >  2:3870083/1‑141 (MQ=255)
                                   gtattGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCTCAGTCGTTGGCGAAGGTACGCTGGTCGGGATGAATGCTACCATCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGgcg                                                                                                          <  1:1043025/140‑1 (MQ=255)
                                    tattGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTCCATGTAGGGGCTGgcgc                                                                                                         >  1:3260989/1‑141 (MQ=255)
                                    aatggAAGATGGGGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGgcgc                                                                                                         <  1:934702/137‑1 (MQ=255)
                                      ttGTAGATTGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCTAAGGTACCCTGATTGATATGAATGCTACTCTCGGTGGTCCTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAg                                                                                                       <  1:616294/141‑1 (MQ=255)
                                      ttGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAg                                                                                                       >  1:4055887/1‑141 (MQ=255)
                                       ggAAGATGGTGGTGTCGTTATGAGGGGCGCAACGATTAATATTGGCGCAGTAGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGt                                                                                                      <  1:2995486/140‑1 (MQ=255)
                                        gAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTACAAATGTACATGTAGGGGCTGGCGCAGTa                                                                                                     >  1:3754098/1‑141 (MQ=255)
                                        gAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTa                                                                                                     <  1:3793268/141‑1 (MQ=255)
                                        gAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCCGTATCATTAAAAAAAATATACATTTAAGGGCTGGCGCAgaa                                                                                                     >  2:2178364/1‑139 (MQ=255)
                                        gAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCCGTATCATTAAAAAAAAAATACATGTCGGGGCTGGCGCAGtc                                                                                                     >  2:3556590/1‑140 (MQ=255)
                                        gAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCCGTACCACTAGTAAAAATGTACATGTAGGGGCTGGCGCAGTa                                                                                                     >  2:586669/1‑141 (MQ=255)
                                          agcgggTGCGGTCGTGATGATGGGGGCAACAATTAATATTGGCGGAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTAtt                                                                                                   <  2:3579428/137‑1 (MQ=255)
                                            aTGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAg                                                                                                 <  1:4305723/141‑1 (MQ=255)
                                                 gCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGgt                                                                                            >  1:4234100/1‑141 (MQ=255)
                                                 gCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCGCTACAATTAAAAAAAAAATACATGTAGGGTCTGGCGCAGTATTAGCAggg                                                                                            >  2:502504/1‑140 (MQ=255)
                                                  cTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGgtg                                                                                           <  1:1196835/141‑1 (MQ=255)
                                                   tGTCGTTATGATGGGCGCAACAATTAATATTGGCGCCGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGgtgt                                                                                          >  1:1606082/1‑141 (MQ=255)
                                                    gTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACATCTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGtgtg                                                                                         >  1:47163/1‑141 (MQ=255)
                                                      tttttggatgAGCGTAACAATTAATTTTGGCGTAGTCGTTGGCGAAGGTACTATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGAt                                                                                       <  2:215181/135‑1 (MQ=255)
                                                      ggtagtgacgGGCGCAACAATTAAGATTGGCGCAGTTGTTGGCGAAGGTACAATGAGTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGAt                                                                                       <  2:1506791/136‑1 (MQ=255)
                                                      ggcattgatgGGCGGGATAGTGAAGAGTGGAGCAGTCGTTGGCGTAGGTGTAATGAGTGATATGAATGCTACTCTCGGGGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGAt                                                                                       <  2:2864233/136‑1 (MQ=255)
                                                      cGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGAt                                                                                       <  1:1703264/141‑1 (MQ=255)
                                                      cGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTACTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGAt                                                                                       <  1:1524299/141‑1 (MQ=255)
                                                      cGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCCGTACCATTAAAAAAAATATACATGCAGGGGCTGGCACTGTCTTAGCAGgtctaat                                                                                       >  2:251301/1‑136 (MQ=255)
                                                          atgatgGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGATGGCGCAGTATTAGCAGGTGTGATTGaa                                                                                   >  1:1659190/1‑141 (MQ=255)
                                                             atgGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAAccc                                                                                <  2:3900051/141‑1 (MQ=255)
                                                             atgGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAAccc                                                                                <  1:2481451/141‑1 (MQ=255)
                                                              ggggCGCTACAATGAGTATTGGCGCAGTCGTGGGGGAGGGTACGATGAGTGATATAAATGCTACGCTAGGTGGGAGTGCTACAACGGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAAcccc                                                                               <  2:2789828/140‑1 (MQ=255)
                                                                  cgcAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCCGTACCATTGAAAAAAATATACATGTAGGGGCTGGCGCAGTATTAGCAGATGTGATTGAACTCACTAg                                                                           >  2:2286736/1‑141 (MQ=255)
                                                                    caacaaTTAATATTGGCGCAGTCGTTGGCGACGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACGACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTg                                                                         >  1:2321051/1‑141 (MQ=255)
                                                                     aacaaTTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGc                                                                        >  1:4361051/1‑141 (MQ=255)
                                                                      acaaTTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGTTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCt                                                                       <  1:3421807/141‑1 (MQ=255)
                                                                      acaaTTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCt                                                                       <  1:2239846/141‑1 (MQ=255)
                                                                      acaaTTAATAGTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCt                                                                       <  1:738684/141‑1 (MQ=255)
                                                                      acaaGTAATAGTGGCGCAGTGGTTGGCGAAGGTACAATGATGGATATGAATGCGACTCTCGGTGGTCGTGCTACAACGGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCt                                                                       <  1:1404391/141‑1 (MQ=255)
                                                                       caaTTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCtt                                                                      <  1:3992674/141‑1 (MQ=255)
                                                                            aaTATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTCGTATCATTAATAAAAAAAAACATCTCGACTCTCGCTCACTATTAACACTTGCGATTTAACCCCCTCGCGCTTCACCg                                                                 >  2:1165304/1‑141 (MQ=255)
                                                                             atatTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCCGTATCATTAAAAAAAAAATACATGTATGGGCTGGCGCAGTATTAGAAAATGAGATTGAACCCCCAAGTGCGTCCCCgg                                                                >  2:1091126/1‑141 (MQ=255)
                                                                              tatTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGt                                                               <  1:4072883/141‑1 (MQ=255)
                                                                              tatTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGt                                                               <  1:1258082/141‑1 (MQ=255)
                                                                              tatTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGATACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGt                                                               <  1:1014618/141‑1 (MQ=255)
                                                                               atTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGtt                                                              <  1:545027/141‑1 (MQ=255)
                                                                               atTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGtt                                                              >  1:381610/1‑141 (MQ=255)
                                                                               atTGGCGCAGTAGTTAGCGAAGGTAAAACGATTGATATGAATGCTACTCGCGGTGGTCGTGTTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGtt                                                              <  1:3192662/141‑1 (MQ=255)
                                                                                ttGGCGCAGTCGTTGGCGAAGGTACAAGGATTGATATGAATGCTACTGTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTta                                                             <  2:2732274/141‑1 (MQ=255)
                                                                                 tGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTtat                                                            <  2:3472115/141‑1 (MQ=255)
                                                                                   gcgcAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATaa                                                          <  1:2554736/141‑1 (MQ=255)
                                                                                      cAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCg                                                       <  1:1149016/141‑1 (MQ=255)
                                                                                        gTCGTTGGCGAAGGTACAATGATTGATATGAATGCTCCTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAg                                                     <  1:2179479/141‑1 (MQ=255)
                                                                                         gcGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAATATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAgg                                                    <  1:390918/140‑1 (MQ=255)
                                                                                          tcttGGAGAAGTTAAAATGATTGATATGAAAGCTATTCTCGGTGGTCGTGCTACAAGTGGAAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAAACTCCTAGTGCTTCACCGGTTATAATCGAGga                                                   <  2:4215376/139‑1 (MQ=255)
                                                                                                cggaGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGt                                             <  1:925790/138‑1 (MQ=255)
                                                                                                 gAAGGTACAATGATTTATATGAATGCTTCTCTCGGTGGTCTGGATACAATTGAAAAGAAGGTACATGTAGGGGCTGGCGCAGTATTAGAAGGTGTGATTGAAAGCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTa                                            <  2:4055887/141‑1 (MQ=255)
                                                                                                   aGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGGTATCATTAAAAAAAAAATAGATGTAGGGGCTGGAGCAGTATTAGCAGGAGAGATTGAACCCCATAGTGCTTCAACGGTTATAATCGAGGATGAGGTAtt                                          >  2:1250891/1‑141 (MQ=255)
                                                                                                   aGGTACAATGATGGATACGAAGGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGTAGTATTAGCAGGTGTGATTGCAGCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTAtt                                          <  1:415060/141‑1 (MQ=255)
                                                                                                    ggTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTa                                         >  1:212300/1‑141 (MQ=255)
                                                                                                       aCAATGATTGATATGGATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATc                                      <  1:2371019/141‑1 (MQ=255)
                                                                                                         aaTGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCgg                                    <  1:2935516/141‑1 (MQ=255)
                                                                                                          aTGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGt                                   >  1:3446929/1‑141 (MQ=255)
                                                                                                              ttgatATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCaa                               <  1:847133/141‑1 (MQ=255)
                                                                                                                 atatGAATGCTACTCTCGTTGGTCGTGCTACAACTGGGAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATg                            <  1:3079912/141‑1 (MQ=255)
                                                                                                                  tatGAATGCTACTCTCGGTGGTCGCCGTATCATTAAAAAAAAAATACATAAAGGGGCTGGCGCAGTATTAGCAGAAAAGATAGAACCCCCTAATGCTACAACAGTTATAATCGAGGATGATGTATTAATCGACACAAATGc                           >  2:2038307/1‑141 (MQ=255)
                                                                                                                    tGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCACATGCAg                         >  1:814816/1‑141 (MQ=255)
                                                                                                                     taattatACTCTCGGTGGTCTGGCTAAGACTTGTAAAAAAGGACATGTAGGGGTTGGCGCAGTATTAGTAGGTGTGATTGATCCCCTTATTGTTTTACCGGTTATAATTGAGGATGATGTATTAATCGGTGCAAATGCAGt                        <  2:435528/135‑1 (MQ=255)
                                                                                                                     gAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGCGGATGATGTATTAATCGGTGCAAATGCAGt                        >  1:1362889/1‑141 (MQ=255)
                                                                                                                        tGCTACTCTCGGTGGTCGGGCTACAACTGGTAAAAATGTACATGTAGGGGTTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTAt                     <  2:3619632/141‑1 (MQ=255)
                                                                                                                          cTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGGACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTAttt                   <  1:2438918/141‑1 (MQ=255)
                                                                                                                              tctcGGTGGTCGCCGTATAATTAAAAAAAAAGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTACTTCACCGGTTATAATCAATGATGATGTATTAATCGGTGCAAATGCAGTTAGTTTAGa               >  2:2406573/1‑141 (MQ=255)
                                                                                                                                 cGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCGTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAgg            <  1:1371829/141‑1 (MQ=255)
                                                                                                                                  ggtggtCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCGTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGgt           <  2:2577917/141‑1 (MQ=255)
                                                                                                                                   gtggtCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGGTGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGgtg          <  1:4207038/141‑1 (MQ=255)
                                                                                                                                    tggtCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGgtgt         >  1:3511365/1‑141 (MQ=255)
                                                                                                                                    tggtCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGgtgt         <  1:2724085/141‑1 (MQ=255)
                                                                                                                                    gggtCGTGCTACAACTAGTAAGAAGGTACATGTAGGGGATGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGgtgt         <  2:3934608/140‑1 (MQ=255)
                                                                                                                                     ggtggtGCTTCATCTGGTAAAAAGGTAAATGTAGGGGCTGGCGCAGTATTGGCTGGTGTGATTGAACCCCCTTGTGCGTCACCGGTTATATTCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTa        <  2:3423363/141‑1 (MQ=255)
                                                                                                                                     ggtCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTa        <  1:4044576/141‑1 (MQ=255)
                                                                                                                                     ggtCGTGCTACAACGGGTAAAAATGTAGATGTAGGGGCTGGCGCAGGATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAAGCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTa        <  1:251301/141‑1 (MQ=255)
                                                                                                                                         gTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACgtg    >  1:2667299/1‑141 (MQ=255)
                                                                                                                                         gTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACgtg    <  1:180014/141‑1 (MQ=255)
                                                                                                                                         gTGATAGAACTAGTAAAAAGGTGGTGGTAGGGGCTGGCGGAGTATTAGGAGGTGTGATTGAACCGCCTAGTGCGTGACCGGTTATAAGGGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACgtg    <  2:23144/141‑1 (MQ=255)
                                                                                                                                           gCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACGTGtt  >  1:969011/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                           
AATTGAACCAGGTGCGTTTATTAGAGAACAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACGTGTT  >  USA300TCH1516_ALE/1434925‑1435204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: