Predicted mutation
evidence seq id position mutation freq annotation gene description
RA USA300TCH1516_ALE 1,435,081 T→A 8.7% N146K (AAT→AAA dapH → 2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑acetyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE1,435,0810TA 8.7% 738.9 / 23.2 291N146K (AAT→AAAdapH2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑acetyltransferase
Reads supporting (aligned to +/- strand):  ref base T (90/164);  new base A (27/2);  total (118/173)
Fisher's exact test for biased strand distribution p-value = 1.08e-09
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 292 total aligned reads displayed.

TTATTAGAGAACAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACGTGTTGGTAAAGGTGCTATTG  >  USA300TCH1516_ALE/1434942‑1435220
                                                                                                                                           |                                                                                                                                           
 tattaGAGAACAAGCGATGATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGt                                                                                                                                           <  1:2251551/141‑1 (MQ=255)
   ttaGAGAACAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCAAAATCTCCAACTGATGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAAGTGGGAAAAATGTAc                                                                                                                                         >  1:2085253/1‑141 (MQ=255)
       agaACAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGt                                                                                                                                     <  1:3367208/141‑1 (MQ=255)
        gaACAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAGTGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTa                                                                                                                                    >  1:4321006/1‑141 (MQ=255)
        gaACAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACACCTGGTAAAAATGTACATGTa                                                                                                                                    >  1:3902009/1‑141 (MQ=255)
        gaACAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTa                                                                                                                                    <  1:136384/141‑1 (MQ=255)
        gaACAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTa                                                                                                                                    <  1:3813163/141‑1 (MQ=255)
        gaACAAGCCATTATTGAAGATGGAGCTGACCATCTGATGTGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTa                                                                                                                                    >  1:1917573/1‑141 (MQ=255)
            aaGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAgggg                                                                                                                                <  1:3578510/141‑1 (MQ=255)
             aGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCCGTACCACTAAAAAAAATATACATGTAGGGGc                                                                                                                               >  2:2069379/1‑141 (MQ=255)
              gCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCt                                                                                                                              <  1:3286771/141‑1 (MQ=255)
              gCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCt                                                                                                                              >  1:3238505/1‑141 (MQ=255)
              gCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCt                                                                                                                              <  1:1241218/141‑1 (MQ=255)
              gCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCt                                                                                                                              <  1:871170/141‑1 (MQ=255)
              gCCAGTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCt                                                                                                                              <  1:2499565/141‑1 (MQ=255)
               ccATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACCACTGGTAAAAAAATACATGTAGGGGCTg                                                                                                                             >  2:3464413/1‑141 (MQ=255)
               ccATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCGCTACCATTAGTAAAAAAGTACATATAGGGGCTg                                                                                                                             >  2:2793836/1‑141 (MQ=255)
                  ttattGAAGATGTGTCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCGCTACCACTAATAAAAATATACATGTAGGGGCTGgcg                                                                                                                          >  2:3870083/1‑141 (MQ=255)
                  gtattGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCTCAGTCGTTGGCGAAGGTACGCTGGTCGGGATGAATGCTACCATCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGgcg                                                                                                                          <  1:1043025/140‑1 (MQ=255)
                   aatggAAGATGGGGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGgcgc                                                                                                                         <  1:934702/137‑1 (MQ=255)
                     ttGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAg                                                                                                                       >  1:4055887/1‑141 (MQ=255)
                     ttGAAGATGGTGCTGTCGTCATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAg                                                                                                                       <  1:2475002/141‑1 (MQ=255)
                       gAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTa                                                                                                                     >  1:3043566/1‑141 (MQ=255)
                       gAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCCGTATCATTAAAAAAAAAATACATGTCGGGGCTGGCGCAGtc                                                                                                                     >  2:3556590/1‑140 (MQ=255)
                         agcgggTGCGGTCGTGATGATGGGGGCAACAATTAATATTGGCGGAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTAtt                                                                                                                   <  2:3579428/137‑1 (MQ=255)
                           aTGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAg                                                                                                                 <  1:4305723/141‑1 (MQ=255)
                             ggTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCCGTATCATTAATAAAAAAAAACATGTAGGGGCTGGCGCAGCATTAACa                                                                                                               >  2:216247/1‑141 (MQ=255)
                                gCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGgt                                                                                                            >  1:4234100/1‑141 (MQ=255)
                                 gtGTCGTTATGATGGGCGCAAGAATTAAGAGTGGCGCAGTCGTTGGCGCAAGCACAAGTAGTTATGTGCACGCGGCTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGgtg                                                                                                           <  1:839948/140‑1 (MQ=255)
                                 cTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGgtg                                                                                                           <  1:2648670/141‑1 (MQ=255)
                                 cTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCGGTACAACTGGTAAAAATATACATGTAGGGGCTGGCGCAGTACTAGCAggag                                                                                                           >  2:2561257/1‑139 (MQ=255)
                                   gTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACATCTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGtgtg                                                                                                         >  1:47163/1‑141 (MQ=255)
                                     cGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGAt                                                                                                       <  1:1703264/141‑1 (MQ=255)
                                     cGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGCACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGAt                                                                                                       <  1:2348155/141‑1 (MQ=255)
                                     cGTTATGATGAGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGAt                                                                                                       <  1:4204815/141‑1 (MQ=255)
                                     cGTTATGAATGGCGAAACAATTAATATTGGCGCAGTAGTTGCCGAAGGTTCAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTATAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGAt                                                                                                       <  2:1246219/141‑1 (MQ=255)
                                           gatgGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCCGTATCATTAATAAAAAAATACATGTAGGTACTAGCTCAGAATTCGCACGTCTGCtttgacc                                                                                                 >  2:231110/1‑136 (MQ=255)
                                            atgGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAAccc                                                                                                >  1:1391888/1‑141 (MQ=255)
                                             tgGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATGGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAAcccc                                                                                               >  1:1183462/1‑141 (MQ=255)
                                               ggCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTAATAAAAAAGTACATGTAGGGGCTGGCGCAGTATTATCAGGTGTGATTGAACCCCCt                                                                                             >  2:2610687/1‑141 (MQ=255)
                                               ggCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCCGTACAATTAGAAAAAAAAAACATGTAGGGGCTGGCGCAGTATTAGCACGTGTGATTGAAaccaca                                                                                             >  2:3304979/1‑138 (MQ=255)
                                                   caacaaTTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCGGTACCATTAAAAAAAAAATACATGTAGGGGCTGGCGCAGTATTACCAGCAGAGATTGACACACCTAGTg                                                                                         >  2:1448587/1‑141 (MQ=255)
                                                    aacaaTTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGc                                                                                        <  1:2730289/141‑1 (MQ=255)
                                                     acaaTTACTATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCt                                                                                       <  1:3656971/141‑1 (MQ=255)
                                                     acaaTTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGTTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCt                                                                                       <  1:3421807/141‑1 (MQ=255)
                                                     acaaTTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCt                                                                                       <  1:2239846/141‑1 (MQ=255)
                                                     acaaTTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCt                                                                                       <  1:1267675/141‑1 (MQ=255)
                                                     acaaTTAATAGTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCt                                                                                       <  1:738684/141‑1 (MQ=255)
                                                      caaTTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCtt                                                                                      <  1:3992674/141‑1 (MQ=255)
                                                        aTTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGACGCAGTATTAGCGGGTGTGATTGAACCCCCTAGTGCTTCa                                                                                    >  1:813636/1‑141 (MQ=255)
                                                            atatTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCCGTATCATTAAAAAAAAAATACATGTATGGGCTGGCGCAGTATTAGAAAATGAGATTGAACCCCCAAGTGCGTCCCCgg                                                                                >  2:1091126/1‑141 (MQ=255)
                                                             tatTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGt                                                                               <  1:4072883/141‑1 (MQ=255)
                                                             tatTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGATACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGt                                                                               <  1:1014618/141‑1 (MQ=255)
                                                              atTGGCGCAGTAGTTAGCGAAGGTAAAACGATTGATATGAATGCTACTCGCGGTGGTCGTGTTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGtt                                                                              <  1:3192662/141‑1 (MQ=255)
                                                                 ggCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGACCCCCCTCGTGCTTCACCGGTtata                                                                           >  1:255051/1‑141 (MQ=255)
                                                                 ggCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTtata                                                                           >  1:2584116/1‑141 (MQ=255)
                                                                 ggCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTtata                                                                           >  1:2974762/1‑141 (MQ=255)
                                                                   cgcAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAAt                                                                         <  1:602206/141‑1 (MQ=255)
                                                                       gTCGTTGGCGCAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAg                                                                     <  1:1507557/141‑1 (MQ=255)
                                                                         tcttGGAGAAGTTAAAATGATTGATATGAAAGCTATTCTCGGTGGTCGTGCTACAAGTGGAAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAAACTCCTAGTGCTTCACCGGTTATAATCGAGga                                                                   <  2:4215376/139‑1 (MQ=255)
                                                                               cggaGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGt                                                             <  1:925790/138‑1 (MQ=255)
                                                                                gAAGGTACAATGATTTATATGAATGCTTCTCTCGGTGGTCTGGATACAATTGAAAAGAAGGTACATGTAGGGGCTGGCGCAGTATTAGAAGGTGTGATTGAAAGCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTa                                                            <  2:4055887/141‑1 (MQ=255)
                                                                                  gagTACAAAAATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTAtt                                                          <  1:4333964/139‑1 (MQ=255)
                                                                                  aGGTACAATGATGGATACGAAGGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGTAGTATTAGCAGGTGTGATTGCAGCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTAtt                                                          <  1:415060/141‑1 (MQ=255)
                                                                                        aaTGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCgg                                                    <  1:2935516/141‑1 (MQ=255)
                                                                                         aTGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCgga                                                   >  1:2405671/1‑140 (MQ=255)
                                                                                         aTGATTGATATAAATGCTAATCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGAGTGATCCGCCTAGTGCTTCACCGGTTATAAGCGAGGATGATGTATTAATCGGt                                                   <  2:4374011/141‑1 (MQ=255)
                                                                                                 tatGAATGCTACTCTCGGTGGTCGCCGTATCATTAAAAAAAAAATACATGTAGGGGCTGGCGCAGTATTAACAAGTGTAATTGAACCCACTAGAACTTCACCGGTTATAAACGAGGATGATGTATTAATCGGTGCAAAtac                                           >  2:1648839/1‑139 (MQ=255)
                                                                                                   tGAATGCTACTCTCGGTGGTCGCCGTATAATTAAAAAAAAAATACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATAATGTATTAATCGGAGCAAAAGCAg                                         >  2:2759434/1‑141 (MQ=255)
                                                                                                    gAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGt                                        >  1:3769308/1‑141 (MQ=255)
                                                                                                    gAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATACAGt                                        >  1:1140155/1‑141 (MQ=255)
                                                                                                     aaTGTTACTCTCGGTGGTCCAGATGCAACTTGTAAATGTGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGGGATTGAACCTTCTAGTGCTTCACCGGTTATAATTGAGGATGATGTATTAATCGGTGCAAATGCAGtt                                       <  2:2463399/141‑1 (MQ=255)
                                                                                                     aaTGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGtt                                       >  1:1737488/1‑141 (MQ=255)
                                                                                                     aaTGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGtt                                       <  1:3082087/141‑1 (MQ=255)
                                                                                                       tGCTACTCTCGGTGGTCGGGCTACAACTGGTAAAAATGTACATGTAGGGGTTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTAt                                     <  2:3619632/141‑1 (MQ=255)
                                                                                                         cTACTCTCGGTGGTCGTCGTATCATTAAAAAAAAAAAACATGTAGGGGCTGGCGCAGTATTAGCAAGTAAGATTGAACCCCCTAGTGCTTCACCAGTTATAACCAAGGATGATCTACTAATCGGTGCAAATACAGatataa                                   >  2:855907/1‑139 (MQ=255)
                                                                                                          tACTCTCTGTGGTTGAGCGAAAACTGGTTAAAGTGTACATTTAGGCGCGGTCGCAGTAGTAGCAGGTGTGATTGAACCCGCTAGTGATTCACCGGTTATAATCGATGATGATGTATTAATCGGTGCAAATGCAGTTAtttt                                  <  2:2198662/141‑1 (MQ=255)
                                                                                                               ggggtggtggtGCGAAAAATGGTAAAAATGTGCATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACGCCATAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAg                             <  2:524871/139‑1 (MQ=255)
                                                                                                                cGGTGGTCGTGCTACACCTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAgg                            <  1:2172267/141‑1 (MQ=255)
                                                                                                                cGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTTGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAgg                            <  1:57432/141‑1 (MQ=255)
                                                                                                                  gtggtCGTGCTACAACTGGTAAAAATGTACATGTAGTGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGgtg                          <  1:2675100/141‑1 (MQ=255)
                                                                                                                   tggtCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGgtgt                         >  1:3511365/1‑141 (MQ=255)
                                                                                                                   gggtCGTGCTACAACTAGTAAGAAGGTACATGTAGGGGATGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGgtgt                         <  2:3934608/140‑1 (MQ=255)
                                                                                                                    ggtCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTa                        <  1:4044576/141‑1 (MQ=255)
                                                                                                                    ggtCGTGCTACAACGGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTa                        <  1:1609162/141‑1 (MQ=255)
                                                                                                                        gTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACgtg                    <  1:180014/141‑1 (MQ=255)
                                                                                                                          gCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACGTGtt                  >  1:969011/1‑141 (MQ=255)
                                                                                                                            tACAACTGGTAGAAATGTACATGTAGGGGCTGGCGCAGTAGTAGCAGGTGTGATTGAACCCCCTAGTGCTTTACCGGTTATTATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACGTGTTgg                <  2:2921207/141‑1 (MQ=255)
                                                                                                                            tACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACGTGTTgg                <  1:1846644/141‑1 (MQ=255)
                                                                                                                              cgagtGGTAAAAATGTACATGTAGGGGCTGGCGCAGTGTTAGTGGGTGTGATTGAACCGATTAGTGTGTTAGTGTTTTTTTTCGTGGTTGATGTATTAATCAGAGCAACGGCAGTGGTGTTGGAATTTGTACGTGTTGGTa              <  2:1146240/137‑1 (MQ=255)
                                                                                                                                tcTGGTAAAAATGTATATGTAGTTGCTGTCGCAGTATGAGCAGGTGTGATTGATCCCCCTAGTGGTTCACTGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACGTGTTGGTaaa            <  2:3479182/140‑1 (MQ=255)
                                                                                                                                 cTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACGTGTTGGTAAAg           >  1:2315045/1‑141 (MQ=255)
                                                                                                                                 atGGTAAAAATGTAGATGTAGGGGGTGGAGCAGTATTGGCAGGTGTGATTTAA‑‑CGCAAGTGCTTCACGGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTGGAAGGTGTACGTGTTGGTAAAGGt         <  2:2334304/140‑1 (MQ=255)
                                                                                                                                    gTAAAGATGTACAGGTGGGGGCGGGCGCAGTATTAGCATGTGTGATTGAACCCCCTAGTGCGTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACGTGTTGGTAAAGGTg        <  2:584903/141‑1 (MQ=255)
                                                                                                                                    gTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACGTGTTGGTAAAGGTg        >  1:1682314/1‑141 (MQ=255)
                                                                                                                                      aaaaaTGTACATGTAGGGGCTGGCGCAGTATTAGCAGGAGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGAAGTTATTTTAGAAGGAAATCGTGTCGTTAAAGGtagt      >  2:687116/1‑138 (MQ=255)
                                                                                                                                        aaaTGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACGTGTTGGTAAAGGTGCTAt    <  1:3447303/141‑1 (MQ=255)
                                                                                                                                        aaaTGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACGTGTTGGTAAAGGTGCTAt    >  1:1555142/1‑141 (MQ=255)
                                                                                                                                          atgtagatgtagGGGCTGGCGGAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACGTGTTGGTAAAGGTGCTAttg  >  1:1968304/1‑141 (MQ=255)
                                                                                                                                          aTGTCCATGTTGAGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACGTGTTGGTAAAGGTGCTAttg  <  1:1745639/141‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                           
TTATTAGAGAACAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACGTGTTGGTAAAGGTGCTATTG  >  USA300TCH1516_ALE/1434942‑1435220

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: