Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2176699–2181157	2181157	1–4459	3 [2]	[2] 3	ilvA/USA300TCH1516_02069	L‑threonine dehydratase biosynthetic IlvA/tRNA‑Gly

GCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATCATCCGGTATTAGCTCCGGTTTCCCGAAGTTATCCCAGTCTTATAGGTAGGTTATCCA  >  USA300TCH1516_ALE/2181131‑2181292                            |                                                                                                                                       tccTTGCTAAGCCGTTACCTTACCAGCTCTCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGACCCTTGCCTTTCAAAATATCATCCGTTATTAGCTCCGGTTTCCCGAAGtt                             <  2:62180/134‑1 (MQ=11)      ggTACGCCGTTACCTTACCAACGAGCTAATGCAGCGCGGATCTATCTATAAGTGACAGCAAGACCGTCTTTCACCTTTGAACCATGCGGTTCAAAATATCATCCGGTATTAGCTCCGGTTTCCCGAAGTTATccc                        <  2:227166/135‑1 (MQ=255)                            tAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATCATCCGGTATTAGTTCTTGTTTCTCTTTTTTATCCCAGTCTTATAGGTAGGTTATCCa  <  1:3906/135‑1 (MQ=11)                            |                                                                                                                                       GCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATCATCCGGTATTAGCTCCGGTTTCCCGAAGTTATCCCAGTCTTATAGGTAGGTTATCCA  >  USA300TCH1516_ALE/2181131‑2181292

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑