Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1045148	1045210	63	2 [0]	[1] 3	USA300HOU_RS05170/rimI_2	hypothetical protein/N‑alpha‑acetyltransferase RimI

TGAAAAAGACCTTGTCCAAATTTATCAGCATAAAATTTATGAATACCTAAACCTCCAAGAAATAATGCAACAATAACATAAATGGCTTTATTGACTTTCATTTGTAAATCCTCCTTAACTATAATTCTACTTAAATTCGTT  >  USA300TCH1516_ALE/1045007‑1045147                                                                                                                                             | tGAAAAAGACCTTGTCCAAATTTATCAGCATAAAATTTATGAATACCTAAACCTCCAAGAAATAATGCAACAATAACATAAATGGCTTTATTGACTTTCATTTGTAAATCCTCCTTAACTATAATTCTACTTAAATTCGtt  >  1:101505/1‑141 (MQ=255) tGAAAAAGACCTTGTCCAAATTTATCAGCATAAAATTTATGAATACCTAAACCTCCAAGAAATAATGCAACAATAACATAAATGGCTTTATTGACTTTCATTTGTAAATCCTCCTTAACTATAATTCTACTTAAATTCGtt  >  2:37307/1‑141 (MQ=255)                                                                                                                                             | TGAAAAAGACCTTGTCCAAATTTATCAGCATAAAATTTATGAATACCTAAACCTCCAAGAAATAATGCAACAATAACATAAATGGCTTTATTGACTTTCATTTGTAAATCCTCCTTAACTATAATTCTACTTAAATTCGTT  >  USA300TCH1516_ALE/1045007‑1045147

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑