Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1515745	1515806	62	2 [1]	[1] 2	[rlmL]	[rlmL]

TTGCGTTAAAACGTCCAACAACAATTTTGATTCGGTCTGCTGTGCGCAACCATAAATTTGCCTTTACAATTGCACTTGCGTCTCCTTCAAAAAATATACGACCATTTTCAACATTTGTTTCATAGCCTAATTCTTGAATTTCCCTAGCAACAACA  >  USA300TCH1516_ALE/1515604‑1515758                                                                                                                                             |               ttgCGTTAAAACGTCCAACAACAATTTTGATTCGGTCTGCTGTGCGCAACCATAAATTTGCCTTTACAATTGCACTTGCGTCTCCTTCAAAAAATATACGACCATTTTCAACATTTGTTTCATAGCCTAATTCTTGAAttt                <  1:37600/141‑1 (MQ=255)               ccAACAACAATTTTGATTCGGTCTGCTGTGCGCAACCATAAATTTGCCTTTACAATTGCACTTGCGTCTCCTTCAAAAAATATACGACCATTTTCAACATTTGTTTCATAGCCTAATTCTTGAATTTCCCTAGCAacaaca  >  2:19956/1‑141 (MQ=255)                                                                                                                                             |               TTGCGTTAAAACGTCCAACAACAATTTTGATTCGGTCTGCTGTGCGCAACCATAAATTTGCCTTTACAATTGCACTTGCGTCTCCTTCAAAAAATATACGACCATTTTCAACATTTGTTTCATAGCCTAATTCTTGAATTTCCCTAGCAACAACA  >  USA300TCH1516_ALE/1515604‑1515758

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑