Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	983976	984019	44	2 [1]	[1] 2	USA300TCH1516_00912/USA300HOU_RS04865	hypothetical protein/65 kDa membrane protein

TTTTCAATTTGTGTTATATTGATTTTGTAAGATACTTTAACTCACAAAGGAGAGAGATTATATGAAATTAAAATCATTTATAACTGTAACTTTGGCACTGGGCATGATCGCAACGACTGGCGCTACTGTGGCAGGTAATGAGGTATCTGCAGCAGAAAAGGAC  >  USA300TCH1516_ALE/983998‑984160                       |                                                                                                                                             ttttCAATTTGTGTTATATTGATTTTGTAAGATACTTTAACTCACAAAGGAGAGAGATTATATGAAATTAAAATCATTTATAACTGTAACTTTGGCACTGGGCATGATCGCAACGACTGGCGCTACTGTGGCAGGTAATGa                        >  1:94484/1‑141 (MQ=255)                       ttttGTAAGATACTTTAACTCACAAAGGAGAGAGATTATATGAAATTAAAATCATTTATAACTGTAACTTTGGCACTGGGCATGATCGCAACGACTGGCGCTACTGTGGCAGGTAATGAGGTATCTGCAGCAGAAAAGGAc  >  1:27096/1‑141 (MQ=255)                       |                                                                                                                                             TTTTCAATTTGTGTTATATTGATTTTGTAAGATACTTTAACTCACAAAGGAGAGAGATTATATGAAATTAAAATCATTTATAACTGTAACTTTGGCACTGGGCATGATCGCAACGACTGGCGCTACTGTGGCAGGTAATGAGGTATCTGCAGCAGAAAAGGAC  >  USA300TCH1516_ALE/983998‑984160

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑