| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | CP000731 | 6,552 | +TCTCCAGGCACTTGTGCATATTCTGAAA | intergenic (+1069/‑419) | cadX → / → USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | = 6552 | 0 (0.000) | 46 (0.780) +TCTCCAGGCACTTGTGCATATTCTGAAA |
39/224 | 0.4 | 100% | intergenic (+1069/‑419) | cadX/USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
| ? | CP000731 | 6553 = | 0 (0.000) | intergenic (+1070/‑418) | cadX/USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator | |||||
CACTAAAATTTCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAATCTCTAATTACACC > CP000731/6414‑6691 | cacTAAAATTTCAGGTTGTGATTTGATATTCATTCCATCTTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtc < 1:61515‑M1/141‑3 (MQ=255)cacTAAAATTTCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtc < 2:204726‑M1/141‑3 (MQ=255)cacTAAAATTTCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtc < 2:178436‑M1/141‑3 (MQ=255) acTAAAATTTCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTACTAGACATTTCTTGGGGAATAGGGACAATCCACtct > 2:172048‑M1/1‑138 (MQ=255) aaaaTTTCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctcca < 1:45624‑M1/141‑7 (MQ=255) aaaaTTTCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGAGGAATAGGAACAATCCACtctcca > 2:58010‑M1/1‑135 (MQ=255) aaaTTTCAGGTTGTGATTTGATATTCATTCCATATTTTTGTTGTCGACAAAGTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccag < 2:286987‑M1/141‑8 (MQ=255) aaaTTTCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTTATAGACATTTCTTGGGGAATAGGAACAATCCACtctccag < 1:120112‑M1/141‑8 (MQ=255) aaTTTCAGGTTGTGATTTAATATTTATTCCATATCTTTCTAGTTCAAAAATTGATAATGCTTCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccagg < 2:52605‑M1/141‑9 (MQ=255) aTTGCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggc < 1:251453‑M1/141‑10 (MQ=255) aGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttt > 2:282518‑M1/1‑127 (MQ=255) aGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttg < 1:275117‑M1/141‑15 (MQ=255) tgtgATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgca > 2:250593‑M1/1‑123 (MQ=255) tgtgATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgca < 1:10364‑M1/141‑19 (MQ=255) gtgATTTGATATTCATTCCATATTTTTCTAGTGCGAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCAGGTACCATAGACTCTTTATTAGACATTTCTTGTGTAATAGGTACAATCCACtctccagtcacttatgcat > 2:76997‑M1/1‑122 (MQ=255) tgATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcata < 1:257695‑M1/141‑21 (MQ=255) aTTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGACTAGGTCCATTCCACtctccaggcacttgtgcatatt < 1:58010‑M1/141‑23 (MQ=255) ttcattcCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaat < 1:182111‑M1/141‑31 (MQ=255) tcattcCATATCTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatc < 2:160090‑M1/141‑32 (MQ=255) tcCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCCGCTGTGCCATATACCATATACTCTTTAATACACATTTCTTCGGGAATAGGAACAATCCCCtctccagacacttctgactatcctgcaaaaccccc > 2:88944‑M1/1‑106 (MQ=255) ccATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaattcactc > 2:46153‑M1/1‑105 (MQ=255) atatTTTTTTAGTTCAAATATTGATTATGCTGCCGTAAAACCGGCTTTGCCATATACCATAGACTCTTTAATAGACATGTCTTGGGGAATAGGAACAATCCACtctccaggaacttgtgcatattctgaaaatccacctgt < 2:208173‑M1/141‑39 (MQ=255) tttttCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcactttcgcatcttctggaaatccacctgtcta > 2:175359‑M1/1‑100 (MQ=255) tttCTATTTCAAAAATTTATAATGCTGCCTTAAAACCGGCTGTGCTATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgtatattctgaaaatccacctgtatgtg < 2:47077‑M1/141‑44 (MQ=255) ttCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgt > 2:62970‑M1/1‑97 (MQ=255) tAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcac > 1:9901‑M1/1‑94 (MQ=255) gagTTCAAAAATTCATAATGCTGCCGTAAAATCGTGTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcac < 2:97442‑M1/140‑48 (MQ=255) gctcaAAAATTGACAACGCTGCCCTAAAATCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgc < 2:191931‑M1/139‑50 (MQ=255) gTTCAAAAATTGATAATGCTGCCGTAAAACCTTGTGTGGCATATACCATAGACTCTTTAATAGACATTTCTGGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacatgtatgtgtcaccc > 2:122360‑M1/1‑92 (MQ=255) gTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgc > 1:176114‑M1/1‑92 (MQ=255) cAAAAATTGATAATGCTGCCTTAAAACCGGCTGTGCAATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaa < 2:231653‑M1/141‑53 (MQ=255) aaTTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatc > 1:169771‑M1/1‑85 (MQ=255) aaTTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATCTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatc < 2:206964‑M1/141‑57 (MQ=255) ttGATAATGCTGCCGTAAAACCGGCTGTGCCATATACGATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgactatccccccttgggggtcacgccaacatcat < 2:21832‑M1/141‑59 (MQ=255) tGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcata < 1:292879‑M1/141‑60 (MQ=255) tGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcata < 1:152215‑M1/141‑60 (MQ=255) tgctgcCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagt < 1:57543‑M1/141‑66 (MQ=255) gcCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgcaaacatcataaccagtaact > 2:94917‑M1/1‑72 (MQ=255) aaaaCCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatac < 1:207079‑M1/141‑75 (MQ=255) aaCCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacat < 1:250593‑M1/141‑77 (MQ=255) cGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattat < 1:13154‑M1/141‑80 (MQ=255) gtgCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgcct < 1:197036‑M1/141‑85 (MQ=255) cATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctt < 1:177996‑M1/141‑89 (MQ=255) atatACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaagtgcacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttcttt > 2:256782‑M1/1‑52 (MQ=255) taCCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaa < 1:136353‑M1/141‑93 (MQ=255) ctctTTAATAGACATTTCTTGGGGAATAGGAACAATCCGCtctccaagcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaacttatcatt < 1:126562‑M1/141‑102 (MQ=255) gACATTTCTTGGGGAATAGGAACAATCCACtctccagacacttgtgcatattctgaaaatccacctgtatgtgtaacgccaacatcataaccagtaactaatacattatctccttctttaaacttatcattcaaacttgat > 2:207822‑M1/1‑30 (MQ=255) cATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaacttatcattcgaacttgattc > 2:38300‑M1/1‑28 (MQ=255) cATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaacttatcattcgaacttgattc < 1:62970‑M1/141‑114 (MQ=255) tGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattctcgccttctttaaacttatcattcgaacttgattcaacactc > 2:200344‑M1/1‑21 (MQ=255) tGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttccttaaacttatccttcgcacttgattcaacaaaa > 2:8743‑M1/1‑21 (MQ=255) ggAATAGGAACAATCCACtctccagccatttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaacttatcattctaacttgattaaacaatacct > 2:181441‑M1/1‑18 (MQ=255) gAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaacttatcattcgaacttgattcaacaatacctg < 2:138673‑M1/141‑125 (MQ=255) ggAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctctaaacttatcattcgaacttgattcaacaatacctacaaaa > 2:174607‑M1/1‑12 (MQ=255) aTCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaacttatcattcgaacttgattcaacaatacctgcaaaatctata < 1:172048‑M1/141‑136 (MQ=255) tCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaacttatcattcgaacttgattcaacaatacctgcaaaatctatac > 1:177741‑M1/1‑5 (MQ=255) tCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaacttatcattcgaacttgattcaacaatacctgcaaaatctatac < 2:91742‑M1/141‑137 (MQ=255) cACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaacttatcattcgaacttgattcaacaatacctgcaaaatctatacca > 2:200727‑M1/1‑3 (MQ=255) cACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaacttatcattcgaacttgattcaacaatacctgcaaaatctatacaa > 1:245901‑M1/1‑3 (MQ=255) cACtctccaggcacttgtgcatattctcaaaatacacccctatgcgtcacgccaacatcatcaccagtacctcatacattatcgccttctctatacttatcattcaaacttgattcaacaatacctgcaaaatctatacta > 2:21008‑M1/1‑3 (MQ=255) aCtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaacttatcattcgaacttgattcaacaatacctgcaaaatctataccag > 1:147392‑M1/1‑2 (MQ=255) aCtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctttaaacttatcattcgaactggattcaacaatacctgcaaaatttataccaa > 2:174848‑M1/1‑2 (MQ=255) aCtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcaagccaacatcataacccgtaactaatacattatcgccttctttaaacttatcattcgaacttgattcaacaatacctgcaaaatctataccag > 1:198139‑M1/1‑2 (MQ=255) | CACTAAAATTTCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAATCTCTAATTACACC > CP000731/6414‑6691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |