| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2179606 = | NA (NA) | 3 (0.050) | 3/244 | NT | 100% | intergenic (+3368/+1927) | ilvA/USA300TCH1516_02069 | L‑threonine dehydratase biosynthetic IlvA/tRNA‑Gly |
| ? | USA300TCH1516_ALE | 2179610 = | 0 (0.000) | intergenic (+3372/+1923) | ilvA/USA300TCH1516_02069 | L‑threonine dehydratase biosynthetic IlvA/tRNA‑Gly | |||||
CAGCTCCCCAAAGCATATCGTCGTTAGTAACGTCCTTCATCGGCTTCTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCCATCCTACAGGAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCA > USA300TCH1516_ALE/2179471‑2179745 | gcgtgcgcttgactaaaaagaaattgtacattgaaaacaagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaag < 2:470679‑M2/1‑1 (MQ=255) gagcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGaa < 2:417562‑M2/3‑1 (MQ=255) agcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAac > 1:237265‑M2/137‑140 (MQ=255) agcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAac > 1:9057‑M2/137‑140 (MQ=255) agcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAac < 2:255222‑M2/4‑1 (MQ=255) cgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAacac < 2:197204‑M2/6‑1 (MQ=255) aaatatactgaaaagaaattgtacattgaaaagtagataagtaagtaaaatatagattttaccaagcaaaaccgactgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAacac < 1:279288‑M2/6‑1 (MQ=255) gcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaagtctcatttgaattaaacacacccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAACACt < 2:162059‑M2/7‑1 (MQ=255) gattgaataaaaagaaattgtacattgaaaattagataagtaagtaaaatatatattttacaaagcaaaaccgagtaaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAACACt < 2:689809‑M2/7‑1 (MQ=255) ctagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttctttcGAACACTAGCGATTATTTCTTATGAATTCAAGCTTAtt < 1:153420‑M2/38‑1 (MQ=255) taagtaggttatatatagattttaccaaccaaaaccgagtgaattaagcgttttaaataagcttgaattcataagaaataatcgctggttttcttttGAACTCTAGCGATTATTTCTTATGAATTCAAGCTTATTTaaaa < 2:36059‑M2/43‑1 (MQ=255) ttcgaaaGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTc > 1:334295‑M2/8‑140 (MQ=255) gaaaGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCa > 1:232086‑M2/5‑140 (MQ=255) gaaaGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTAAGCTTAAAAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCa > 1:107105‑M2/5‑140 (MQ=255) | CAGCTCCCCAAAGCATATCGTCGTTAGTAACGTCCTTCATCGGCTTCTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCCATCCTACAGGAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCA > USA300TCH1516_ALE/2179471‑2179745 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |