| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 618,567 | T→C | 13.0% | D1223D (GAT→GAC) | sdrD → | Serine‑aspartate repeat‑containing protein D |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 618,567 | 0 | T | C | 13.0% | 132.9 / 4.5 | 72 | D1223D (GAT→GAC) | sdrD | Serine‑aspartate repeat‑containing protein D |
| Reads supporting (aligned to +/- strand): ref base T (15/44); new base C (8/2); total (25/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.61e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGCGACTCAGATTCAGACAGCGACTCAGATTCAGACAGCGACTCAGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGAC > USA300TCH1516_ALE/618430‑618705 | cctgatacagattcagacaatgactctgattcagacagcgactCAGACTCAGATAGTGATTAAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACtcatattc < 2:43845/133‑1 (MQ=14)agcgactcagattcagacagagactcagattcagacAGCGACTCAGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACtcagattc < 1:423808/140‑1 (MQ=255) cagattcagacagcgactcagattcagacagcgactCAGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGc > 1:313675/1‑140 (MQ=255) cagattcagacagcgactcagattcagacagcgactCAGACTCAGATAGTGAGTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGc < 1:476990/140‑1 (MQ=255) ttcagacagcgactcagattcagacagcgactcagaCTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACGCAGACTCAGATAGCGACTCGGACTCAGACAGCGACt > 2:166181/1‑140 (MQ=14) tcaaccagcgacacagattcagccagcgcctcagaCTCAGATAGTTAGTCAGATTCAGATAGCGACGCAGATTCAGACAGCTACTCAGATTCAGACAGCGCCTCAGACTCATATAGTGACTCAGATTCAGATAGCGACTc < 1:8010/135‑1 (MQ=14) gacagcgagtgcgattccgacaccggctcagaCTCAGATAGTGAATCCGAAACGGTTGTCTACTCCGCTTCTGACATCGACGCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGa < 1:143498/140‑1 (MQ=9) gacagcgactcagattcagacagcgactcagaCTCAGATAGTGATTCAGACTCAGACAGCGACTCAGACTCGGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATACCGACACAGa > 2:306732/1‑140 (MQ=11) cagcgactcagattcagacagcgactcagaCTCAGATAGTGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACGCAGact > 2:711617/1‑138 (MQ=11) gcgactcagattcagacagcgactcagaCTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCg < 1:144748/140‑1 (MQ=255) gcgactcagattcagacagcgactcagaCTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCg < 1:180432/140‑1 (MQ=255) gactcagattcagacagcgactcagaCTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGa < 1:606225/140‑1 (MQ=255) ctcagattcagacagcgactcagaCTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACCCAGACTCAGACAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGGCTCAGATTCGGCCa > 2:370785/1‑140 (MQ=17) tcctatgcagacagcgagtcggaCTCGGACGAGGAGTCAGATTCAGATAGCGACTCAGACTCAGACAGCGACTCAGATTCAGACATCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAg < 2:703600/133‑1 (MQ=11) tcagattcagacagcgactcagaCTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAg > 1:466916/1‑140 (MQ=255) tcagattcagacagcgactcagaCTCAGATAGAGATTCAGACTCAGCGAGCGACTCAGATTCAGCGAGCGAATCAGACTCAGAGAGCGAATCAGACTGAGAGAGAGACCAAGAATCAGAGAGAGACTCAGACTCagagag > 2:168801/1‑140 (MQ=2) ggattcagacagcgactcagaCTCAGGTAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCg < 1:738287/139‑1 (MQ=255) gactcagacagcgactcagaCTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGa < 1:218378/137‑1 (MQ=255) tcagacagcgactcagaCTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGCCTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTc < 1:480233/140‑1 (MQ=255) aagaccgacacagaCTCAGACAGCGATACAGACTCAGATAGCGACTCCGATTCAGACACCGACTCAGACTCAGACAGCGACTCAGACTCCGACAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGa < 2:315947/135‑1 (MQ=14) gcgactcagaCTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCATACAGCGCAACAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGTTGCAGATAGCGACTCTGATTCGGGCGGCGATGACGACTCa > 2:272918/1‑140 (MQ=14) cgactcagaCTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAg > 1:381628/1‑140 (MQ=255) actcagactcagATAGTGATTCAGACTCAGATAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGCCTCAGACTCAGATAGCGATGCAGACTCAGAt > 2:748406/1‑140 (MQ=11) ctcagactcagaTAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGACTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATa > 1:163649/1‑140 (MQ=255) tcagactcagaTAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCGGATTCAGATAGCGACTCAGACTCGGAGAGGGACTCAGACTCGGagag > 2:435276/1‑140 (MQ=14) actcagaTAGAGATTGAGATTCAGATAGCGACTCAGATTCAGACAGCGACTGAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGAc < 2:476438/140‑1 (MQ=255) gATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACtcagattcaga > 1:298039/1‑140 (MQ=255) gATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACGCAGATAGCGACTCAGACTCAGATAGCGACTCAGACACGGACAGCGAAGCAGACTCAGATAGCGACtcagatgcaga > 2:398149/1‑140 (MQ=14) tCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAg < 1:79856/140‑1 (MQ=255) cAGACTCAGATGGCGACTCAGATCCAGACAGCGATTCAGACTCAGACATGGACGCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGc < 2:684180/140‑1 (MQ=14) cAGACTCAGATAGAGACACAGATTCAGACAGCGACTCAGACTCAGACAGCGACACAGACTCAGACAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGc < 2:441940/140‑1 (MQ=255) agtcTCAGCTTGAGACGCATATTCTGACAGCGATACAGACTAAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCg < 2:692884/137‑1 (MQ=14) aGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCg < 1:548103/140‑1 (MQ=255) gACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGa < 1:81005/140‑1 (MQ=255) aCTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGAt < 1:90147/140‑1 (MQ=255) cTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGACTCAGACAGCGAATAAGACTCAGATAGCGACTCAGAATCAGCTAgagaga > 2:208325/1‑138 (MQ=11) tCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAg < 1:404793/98‑1 (MQ=255) tCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGACTCAGATAGCGACTCAGATTCGGACAg > 2:404793/1‑98 (MQ=255) gATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGa > 1:644102/1‑140 (MQ=255) gATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGa < 1:8335/140‑1 (MQ=255) aTAGCGACTCAGATTCAGCCAGCGACTCAGACTCAGACGGCGCCTCAGACAAAAACACACACGCAGTCGCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGAc < 1:175224/140‑1 (MQ=14) aTAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGAc < 1:622154/140‑1 (MQ=255) gtgACGCAGAAACAGACAAGGACGCAGACTCAGACAGCGAGACAGACACAGATAGTGACTCAGATTCAGATAGGGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCa < 2:50737/138‑1 (MQ=14) gCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCa < 1:663877/140‑1 (MQ=255) gCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCa < 1:645434/140‑1 (MQ=255) cGACTGCGACTCACAAAGCGACGCAGACTCAGACAGCGACTCAGTCTCCAAGATCTACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAg < 2:656660/140‑1 (MQ=11) gagtCAGAGTAAGACACAGATTCAGATTCAGACAGCGACACAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGa < 2:563807/137‑1 (MQ=14) ccAGACTCAGCCAGCGACACAGACTCAGATAGCCACTCAGACTCACATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAg < 2:104823/139‑1 (MQ=14) cAGATTCAGACAGCGACTCAGACTCAGACACCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGACAGCGACTCAGATTCAGAGAGCGATTCGGACTCAGATAGc < 1:449770/140‑1 (MQ=255) gATGCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGa < 1:417233/140‑1 (MQ=255) aTTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGAc < 1:528934/140‑1 (MQ=255) aTTCAGACACCGACACAGACTCAGACAGCCACTCAGACTCAGATAGTGACGCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGAc < 2:697469/140‑1 (MQ=255) tcggacagcgcgtcgcacacagacagcgactcagagtcgGATAGTGACTCAGAGTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtc < 2:298556/137‑1 (MQ=14) tcagagagcgagagacactcagagagcgatacagacTCAGATACTGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtc < 2:191830/140‑1 (MQ=14) ggacggccactcatactcatacacggactctgactcaGATAGTGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcag < 2:689602/139‑1 (MQ=14) agacagcgactcagactcagacagcgactcagactcAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcag < 1:463135/140‑1 (MQ=255) gacagcgactcagactcagacagcgactcagactcaGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGCCTCAGACAGCGACtcaga > 1:148700/1‑140 (MQ=255) acagcgactcagactcagacagcgactcagactcagATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcagat < 1:19341/140‑1 (MQ=255) gcgactcagactcagacagcgactcagactcagaTCGTGACTCAGAGACAGATAGCGACTGAGAGTCGGACAGCGATCGAGACGCAGATAGCGACTCAGATTCCGATAGAGATACGAACTCCGAGAGCGCAgcagattca > 2:22767/1‑140 (MQ=14) gactcagactcagacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcagattcaga < 1:370785/140‑1 (MQ=255) cagactcagacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGt > 1:466416/1‑140 (MQ=255) gactcagacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGa < 1:95838/140‑1 (MQ=255) ctcagacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGAtt < 1:711617/140‑1 (MQ=255) gacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCCGATAGCGACTCAGATTCAGATAGTGATTCAGa > 1:309892/1‑140 (MQ=255) gacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGa < 1:423104/140‑1 (MQ=255) gcgacgcagactcagaTAGTGACCAAGACTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCa < 1:236192/140‑1 (MQ=255) cgactcaggctcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATGCAGACTCAGATAGCGACTCAGATTCAGATAGCGATCCGGAATCAGTGCGGGACTCTGATTTAGATAGTGATTCAGACTCAg < 1:326929/140‑1 (MQ=17) ctcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATa > 1:466833/1‑140 (MQ=255) agactcagaTAGTGACTCAGATTCAGATAGCCACTCAGCCGCAGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCg < 1:320530/140‑1 (MQ=17) agacgcagaTAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCg < 1:689516/140‑1 (MQ=255) gactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGa < 1:510868/140‑1 (MQ=255) gTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATCGCGCCTCAGACTCAGATAGCGATTCGGACTCAGATAGCGACTCAGACTCAGATAGAGATTCAGACTCAGATAGCGACACAGACTCa > 2:343434/1‑140 (MQ=14) gACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGATACCGACTCGCACTCAGATCGCGACTCAGATTCAGATAGTGAATCATCCCCAGATCGCGGCTCAgcgcacgc > 2:163565/1‑133 (MQ=14) cTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCCGATAGTGATTCAGACTCAGATAGCGACTCAGCTTCAGACa > 1:204310/1‑140 (MQ=255) tcagattcagatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCGGACTCAGATAGCGACTCAGACTCAGATAGTGATTCAGACTCCGATAGCGACCCAGAATCAGACAg > 2:482062/1‑140 (MQ=14) attcagatAGCGACGCAGATGCAGACAGCGATTCAGACACAGACAGCGACTCAGATTCAGAAAGCGACTCGGACTCAGAAAGCGACTCAGATTCAGATAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGAc < 2:466916/140‑1 (MQ=11) | AGCGACTCAGATTCAGACAGCGACTCAGATTCAGACAGCGACTCAGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGAC > USA300TCH1516_ALE/618430‑618705 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |