Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | USA300TCH1516_ALE | 2,279,705 | G→A | 100% | A943V (GCA→GTA) | ebh_3 ← | Extracellular matrix‑binding protein ebh |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | USA300TCH1516_ALE | 2,279,705 | 0 | G | A | 98.2% | 194.5 / ‑6.0 | 68 | A943V (GCA→GTA) | ebh_3 | Extracellular matrix‑binding protein ebh |
Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (32/31); minor base T (1/2); total (34/34) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
GTTATTAGTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTGCTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGAATTTGCTG > USA300TCH1516_ALE/2279575‑2279840 | gTTATTAGTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCCTCAGTTGCTGATGTTACTGTTGttt > 1:75366/1‑140 (MQ=255) ttattaGTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTc > 1:72630/1‑140 (MQ=255) ttGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCGTCAGTTGCTGATGTTACTGTTGTTTCACCTGtt > 1:202333/1‑140 (MQ=255) tGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTg < 1:260598/140‑1 (MQ=255) aTTCTTCTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGcc < 2:447219/140‑1 (MQ=255) aTTCTACAACTGATTTACTGGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGcc < 1:472927/140‑1 (MQ=255) aTTCCACTTCTGGTTTACCAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGcc < 1:600867/140‑1 (MQ=255) cTTCTGGTTTACTAGTTACATCGTTATCCCTTGTCGGACTGTTTGTTGATGCATCTACACTAGAAGTGTTATTAGCTTGC‑GGTTTATC‑GTTTGCATCATCAGTCGCTGATGTTACTGCTGTTTCCCCCGTTGCCGCATCa > 1:221247/1‑140 (MQ=255) cTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCTTCa > 1:452370/1‑140 (MQ=255) ttCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCAc < 1:14377/140‑1 (MQ=255) tGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACta‑t < 2:249078/140‑1 (MQ=255) tGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACta‑t > 2:642573/1‑140 (MQ=255) tACTAGTTACATCGTTATCCATTGTCGGCCTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGGTGTTCCTGTTGTTTCACCTGTTCCCGCCTCACTA‑TTAttt > 2:247460/1‑140 (MQ=255) tACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTAttt < 1:374124/140‑1 (MQ=255) cctggTTACCTCTTTATCCATTTTCGGACTGTTTGTTGATGCTTCTACACTAGATTTGTTATTAGCTTGC‑GGTTTTTC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTg < 2:713086/136‑1 (MQ=255) cTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTgg < 1:69136/140‑1 (MQ=255) tAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTCGCGGGCTCTTCTATCTGCTT‑‑TTACTGGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGgt > 2:162535/1‑140 (MQ=255) tgTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCGCCTGTTGCCGCATCACTA‑TTATTTGgtg < 2:268523/139‑1 (MQ=255) aGTTACATGTTTATCCATTGGTGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTTC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGgtg < 2:155233/140‑1 (MQ=255) cGTTATCCATTGTCGGACTGTTTGTTTCTGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCCGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGga > 2:398356/1‑140 (MQ=255) cGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGga < 1:211879/140‑1 (MQ=255) ttATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGgagc > 1:122336/1‑139 (MQ=255) tCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGc < 1:571842/140‑1 (MQ=255) ccATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCCCCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCg > 1:516406/1‑140 (MQ=255) cATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCCCCA‑TTATTGCGTGTTGTCGGAGCAGCGt > 2:44856/1‑140 (MQ=255) cATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGCAGCGt > 1:740274/1‑140 (MQ=255) aTTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTc > 1:599804/1‑140 (MQ=255) aTTGTCGGACTGTTTGTTGATGCATCTACAATATAATTTTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTc < 1:516747/140‑1 (MQ=255) ttGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTCTTTGGTGTTGTCGGAGAAGCGTCt > 1:456903/1‑140 (MQ=255) ttGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCt > 1:581483/1‑140 (MQ=255) tGTCGGACTGTTTGTTGATGCATCTACACTATAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTg < 1:474466/140‑1 (MQ=255) cGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTAAAGTGTTTGAATTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGATGTCGGCGACGCCTcttctt > 1:555268/1‑140 (MQ=255) gtttgtgtgtcGATGCTTCTACACTAGGTTTGTTATTAGCTTGC‑TGTTTATC‑CTTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTg < 2:151687/137‑1 (MQ=255) tttgttGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCAtt > 1:24049/1‑140 (MQ=255) tttgttGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCAtt > 1:24546/1‑140 (MQ=255) aTGCATCTACACTAGAATTCTTATTAGCTTGC‑GATTTTTC‑ATTTGAATCATCAGTTGCTGATATTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGAGTTTGTCGGAGATGAGTCTGTATTGACATTATCTgtc > 2:53325/1‑140 (MQ=255) gCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTgtcgt > 1:254994/1‑140 (MQ=255) aTCTACACTCGTATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACGA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGtct < 2:582548/140‑1 (MQ=255) ctgcgaGAATTGGTATCAGCTCGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGa < 1:279152/135‑1 (MQ=255) acacTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGa < 1:218414/140‑1 (MQ=255) acacTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCAACACGA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGa < 1:481180/140‑1 (MQ=255) cacTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGACTGGCATGCCATTACCTGTAGTCTCAGAt > 2:367014/1‑140 (MQ=255) gAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGtt < 1:669225/140‑1 (MQ=255) gAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGtt < 1:658248/140‑1 (MQ=255) aaTTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTa > 1:267003/1‑140 (MQ=255) aTTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAg < 1:354872/140‑1 (MQ=255) tattaGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGCTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGt > 1:487853/1‑140 (MQ=255) ttaGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTAACCTGTTGCCGCATGACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTGTGAGATACGATAGGgtgtac > 2:600866/1‑138 (MQ=255) ttGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTAt > 1:571780/1‑140 (MQ=255) ggTTTATC‑ATTTGCATCATAAGTTGCTTGTGTTACTGGTGTTTCACCTGTTGCCGCATCACTA‑TTTTATGTGGTTGTCTGAGAAGCTTCTGCGTTGCCATTAGCTGTCGTTTCAGTGATGTTAGGTTGCCCAGTATTTTc > 2:231671/1‑140 (MQ=255) tttATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTg < 2:24049/140‑1 (MQ=255) tttATC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTg < 2:24546/140‑1 (MQ=255) tC‑ATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGgtgt < 1:340499/140‑1 (MQ=255) tttGCTCCACCAGTTGCTGATGTTACTGTTGTTTCACCTGTTTCCGCATCAGTG‑TGATCTCGTGTTGTAGAAGAAGCGTCTGCTTTGCCATTTGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGc < 2:124706/140‑1 (MQ=255) atcatcAGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAg < 1:361599/140‑1 (MQ=255) tcatcaGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTCGGTTGTCCAGTCTTTTCTGGTGTTGCTTTAGc > 1:252749/1‑140 (MQ=255) catcaGTTGCTGATGTTACTGTTGTTTCACCCGGTGCCGCA‑CACAACTTGCGCAATTTGGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTACGTTGTCCAGTATTTTCTGGTGTTGCATTAGCa < 1:753388/140‑1 (MQ=255) atcaGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCAt < 2:516406/140‑1 (MQ=255) agcaGTTGCTGATGTTCCTGGTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCAt < 1:225498/138‑1 (MQ=255) aGTTGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCCGTATTTTCTGGTGCTGCATTGGCACTTg > 2:248824/1‑140 (MQ=255) ttGCTGTTGTTTCTGGTGTGTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTGGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGaa < 2:407834/140‑1 (MQ=255) tGCTGATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGATAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTGCAGTATTTTCTGGTGTTGCATTAGCATTTGact > 1:194677/1‑138 (MQ=255) gCTGATGTTACTGTTGTTTCTTCTGTTGCCGCATCGCTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGAAtt < 2:161380/140‑1 (MQ=255) gATTTTTCTGTTTTTTCGCGTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGAATTTGc < 2:740274/140‑1 (MQ=255) gATGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGAATTTGc > 1:349179/1‑140 (MQ=255) tGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTGGGTTGTCCAGTATTTTCTGGTGTTGCATTGGCGTTTGAATTTGCTg > 1:195342/1‑140 (MQ=255) tGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGCATTTGCTg > 1:318533/1‑140 (MQ=255) tGTTACTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGAATTTGCTg > 2:268016/1‑140 (MQ=255) | GTTATTAGTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGC‑GGTTTATC‑ATTTGCATCATCAGTTGCTGATGTTGCTGTTGTTTCACCTGTTGCCGCATCACTA‑TTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGAATTTGCTG > USA300TCH1516_ALE/2279575‑2279840 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |