Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2176691–2179435	2181128–2179439	5–4438	4 [3]	[3] 4	ilvA/USA300TCH1516_02069	L‑threonine dehydratase biosynthetic IlvA/tRNA‑Gly

GGTCGGCTATGCATCGTTGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATCATCCGGTATTAGCTCCGGTTTCCCGAAGTTATCC  >  USA300TCH1516_ALE/2181113‑2181269                 |                                                                                                                                             ggTCGGGTAGGCATCGTTGCCTTGGTAAGCCGTGACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAATACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATCATCCGGTATTAGCTCCgg                  <  2:18765/141‑1 (MQ=255) ggTCGGCTATGCATCGTTGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATCACCCCGTATTAGCTCCgg                  <  2:78628/141‑1 (MQ=17)        tATGCATCGTTGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATCATCCGGTATTAGCTCCGGTTTCCCg           <  1:149496/141‑1 (MQ=32)                 ttGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATCATCCGGTATTAGCTCCGGTTTCCCGAAGTTATcc  >  1:96952/1‑141 (MQ=32)                 |                                                                                                                                             GGTCGGCTATGCATCGTTGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATCATCCGGTATTAGCTCCGGTTTCCCGAAGTTATCC  >  USA300TCH1516_ALE/2181113‑2181269

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑