| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000731 | 15,413 | C→T | 13.8% | D68N (GAC→AAC) | USA300HOU_pUSA300HOUMR0019 ← | strepthothricin acetyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000731 | 15,413 | 0 | C | T | 13.8% | 382.1 / 42.2 | 164 | D68N (GAC→AAC) | USA300HOU_pUSA300HOUMR0019 | strepthothricin acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (73/66); new base T (14/9); total (88/76) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.05e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.71e-01 | |||||||||||
Only 100 of 166 total aligned reads displayed.
CCTATGCCTTGCCCCCTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAATCTTACCTATCAC > CP000731/15274‑15551 | ccTATGCCTTGCCCCCTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTc > 2:563565/1‑140 (MQ=255) cTATGCCTTGCCCCCTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTCTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGCTATCTTATCATAGCCGTATTGTcc > 2:48403/1‑139 (MQ=255) tATGCCTTGCCCCCTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCaa < 1:487089/140‑1 (MQ=255) tATGCCTTGCCCCCTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCaa < 1:408840/140‑1 (MQ=255) tATGCCTTGCCCCCTGAAAGCCTTACATGCGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTCAACAACTCCGTTTATTAGATATATTATCTTATCAGTATTGTCaa < 1:301214/140‑1 (MQ=255) tATGCCTGGCCTCCTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTGCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCaa < 1:443934/140‑1 (MQ=255) aTGCCTTGCCCCCTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAat > 2:161216/1‑140 (MQ=255) tGCCCCCTGAAATCCTTACATACGGCGATATCTTCTATATCAGCGTACCGGTTCCACTTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCTTCTTGGTAGTAAAGATCTATTTTCTTGTCAGTATTGTCATTATATTc > 2:492277/1‑140 (MQ=255) tGCCCCCTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTc > 2:225413/1‑140 (MQ=255) tcccTGACATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTACCTTTTCCGCCGCATTTATCGTCTTCGTAGTAACGCTATATGCTCTTATCAGTATTGTCAATATATTCAAg < 2:619175/139‑1 (MQ=255) cccTGACATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAATTTAACTTTTCCGACGCATTTATCATCTTGGTAGTAAAGATATATCATACTATCAGTATTGTCACTTTATTAAAgc > 2:467656/1‑139 (MQ=255) ccTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGc > 2:361017/1‑140 (MQ=255) ccTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGc > 1:315932/1‑140 (MQ=255) tGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGGTTAACTTTTCCGACGCATTTATCGGCTTGGTAGTAAAGGTATATTATCTTAGCCGTATTGTCAATGTATGCAAGGCaa > 1:138322/1‑140 (MQ=255) gAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAAt < 1:610499/140‑1 (MQ=255) gaTCCTTACATACGGCGTTGTCTTCTACATAAGCCAACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCt < 2:420420/139‑1 (MQ=255) aaTCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACCTATACGACGGTTTTATCGTCTTGGTAGTAAAGATATATTATCTTATTAGTATTGTCAAGATATTAAAGGCAAttt > 2:249188/1‑138 (MQ=255) aTCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTg > 1:372486/1‑140 (MQ=255) ccTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTTAATATATTCAAGGCAATCTGcc > 2:560734/1‑140 (MQ=255) cTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCACTTTTTTCGCAGTTTAACTTTTCCGACGCATATATCGTCTTGGTAGTACAAATATATTATCTTAACAGTATTTTCAATCTATTCAAAGCAATCTGact > 2:279213/1‑140 (MQ=255) cATACGGCGATATCTTCTATAGAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGGATTGTGAATATATTCAAGGCAATCTGCctcctc < 1:111435/140‑1 (MQ=255) aCGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCatcatcatc > 2:34032/1‑140 (MQ=255) ggCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATCTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTTAATATATTCAAGGCAATGTGCCGCCtcatcct > 2:437041/1‑140 (MQ=255) gctttatCTTCTATATAAGCGTACCGGTTGCGATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCtcatcctc < 1:418596/136‑1 (MQ=255) tatCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTTAATATATTCAAGGCAATCTGCCTCCtcatcctcttca > 2:67886/1‑140 (MQ=255) atCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTGTtcatcctcttcat > 2:641307/1‑140 (MQ=255) ctATATAAGCGTACCGGTTCCATTTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCtcatcctcttcatcctct < 2:19785/140‑1 (MQ=255) ctATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCtcatcctcttcatcctct < 2:243146/140‑1 (MQ=255) atataAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCatcctcttcatcctcttc > 1:148819/1‑140 (MQ=255) tataAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGAGGCAGAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCg < 1:514834/140‑1 (MQ=255) taAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTc < 1:291865/140‑1 (MQ=255) taAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTc < 1:353863/140‑1 (MQ=255) caaGCGCACCGGTGCCTATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATTTTCAAGGCAAGCTGCCCCCTCATCCTCTTCATCCTCTTCGTc < 2:389549/139‑1 (MQ=255) acgCGTAGCGATTCCAGTGTTTTTGCAGTTTAACTTTTCCTTCGCATTTATCGTTTTGGTAGTAAAGATATATTGTCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCt < 2:459734/138‑1 (MQ=255) aaGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCt < 1:345322/140‑1 (MQ=255) aGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTTAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCtt > 2:547525/1‑140 (MQ=255) aGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTTAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCtt > 1:174095/1‑140 (MQ=255) aGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCCTCCTCTTACTCCTCTTCGTCtt > 2:661497/1‑140 (MQ=255) aGCGTACCGGTTCCAATTTTTTCGCAGTTTAAATTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATGACCTGATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCACCCTCTTCAGCCTCTACGCCtc > 2:180862/1‑139 (MQ=255) gCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTAATGTCAATATATTCAAGGCAATCTGCCTCCTCATCGTGTTCATCCTCTTCGTCTTg > 1:43943/1‑140 (MQ=255) cGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTga > 2:589560/1‑139 (MQ=255) gTACCTTTTCCAATTTTTTCTCAGTTTAACTTTTCCGATGCATTTAACGACATGGTAGTAAAGAGATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGt < 1:55907/140‑1 (MQ=255) gTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATGCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGt < 1:368848/140‑1 (MQ=255) tgccGGGTCCAATTTTTTCGCAGTTTAACTTTTCCGTCGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTa < 2:23422/138‑1 (MQ=255) aCCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCATCTTAATCCTTTTCGTCCTGGTAg > 2:128487/1‑140 (MQ=255) ccGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATCTTATCTTATCAGTATTGTCCCTATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTTGTCTTGGTCGc > 1:27926/1‑140 (MQ=255) cGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGAATCCTCAACCTCTTACACCTCTTCGTCACGGTAGCt > 2:67247/1‑140 (MQ=255) ggTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTTAATATATTCAAGGCACTCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCtt > 1:465629/1‑140 (MQ=255) ggTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCtt > 1:475823/1‑140 (MQ=255) ggTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATACAAGGCAATCTGCCTCCTCCTCCTTTACATCCTCTTCGTCATGCTCGCtt > 2:697575/1‑140 (MQ=255) gTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTCTCTTGTCAGTATTTTCAATATATTCAAGGCAATCTGCCTCCTCCTCCTCTTCATCCTCTTCTTCTTGGTTGCttt > 1:26217/1‑140 (MQ=255) ttCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCtttt < 1:28447/140‑1 (MQ=255) tCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTGAATACATTCAAGACAATTTGCCTCCTCATCCTCTTCATCCTCTTCGTCTCTGTAGCttttt > 2:461387/1‑140 (MQ=255) tCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCttttt > 1:231462/1‑140 (MQ=255) aTTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAat > 1:534523/1‑140 (MQ=255) aTTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGCCTTGGTAGCTTTTTAAat > 2:51432/1‑140 (MQ=255) aTTTTTTCGCAGTTTAACTTTTACGATGCAGTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAat < 2:278026/140‑1 (MQ=255) ttttttCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTTTCGGTAAGTTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTGTTCGTCTCGGTAGCTTTTTAAatg > 1:550062/1‑139 (MQ=255) tttCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTTAAGGCAATCTGCATCCTCCTCCTCTTCATCCTCTTCGGCTTGGTAGCTCTTTACATATgt > 2:209889/1‑139 (MQ=255) tttCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATgg < 2:326925/140‑1 (MQ=255) tCGCAGTTTAACTTTTCCGTCGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGgcg < 2:657804/140‑1 (MQ=255) gCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCATCTTCGTCCTGGTAGCTTTTTACATATGGCGCt > 2:44183/1‑140 (MQ=255) gTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATATTATCAGTCTTGTCAATATATTCAAGGCAATCTGCCTACTCATACTCTTACTCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCa > 1:120237/1‑140 (MQ=255) tttAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCAt < 1:255345/140‑1 (MQ=255) cTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGt > 2:580062/1‑140 (MQ=255) cTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGt < 1:563565/140‑1 (MQ=255) ttttCCCACTCATTTATCGGCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTa < 1:341321/140‑1 (MQ=255) ttcaggcGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAAt < 1:31411/134‑1 (MQ=255) ttCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTGTTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAAt < 1:442566/140‑1 (MQ=255) tCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTTAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAAtt > 2:630404/1‑140 (MQ=255) cgtaTTTATCGTCTTGGTAGTTAAGATATATTATCTTATCAGTATTGTTAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTGCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTa < 2:557019/137‑1 (MQ=255) cGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTa > 1:210639/1‑140 (MQ=255) gCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATGGAGTAATTTTGTaa > 1:537020/1‑140 (MQ=255) gCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTaa > 1:88346/1‑140 (MQ=255) tttATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAgg < 1:81809/140‑1 (MQ=255) ttATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGt < 2:383493/140‑1 (MQ=255) aTCGTCTTGGTAGGAAAGATATATTATCTTATCAGTATTGTTAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTcc < 2:11968/140‑1 (MQ=255) cGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCaa < 1:218615/140‑1 (MQ=255) cGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGACTCATAGATTAATTCTGTAAAGGTCCaa < 1:136033/140‑1 (MQ=255) gTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTTAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCCTCAACTACGACTGGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAAt < 1:630404/140‑1 (MQ=255) gTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAAt < 1:378695/140‑1 (MQ=255) gtagtaAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGt > 1:573898/1‑140 (MQ=255) aaaGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTACTTCTGTAAAGGTCCAGTTCTCGTTTTcc > 1:99701/1‑139 (MQ=255) aaGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTCATTCTGTAAAGGTCCAATTCTCATTTTctt > 2:573939/1‑138 (MQ=255) aaGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAAGATTGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTcct > 1:618631/1‑138 (MQ=255) ttatcttatcAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCATTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGATCCAATTCTAGATTTCATAccaagct > 2:7371/1‑135 (MQ=255) tatcgtatcAGTATTGTTGATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGta < 1:683995/140‑1 (MQ=255) atcttatcAGTATTGTTAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTAATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTCCAGGTCCAATTCTCGTTTTCATCCCTCGGtct > 2:258335/1‑138 (MQ=255) ttatcCGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAAt < 1:82807/140‑1 (MQ=255) ttagcAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCGTCCTCTTCGTCTTGGTAGCTTTTTACATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAAt < 2:197881/140‑1 (MQ=255) atcAGTACTGTCACTATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAATCt < 2:580858/140‑1 (MQ=255) tcAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATATTCtt > 1:155914/1‑140 (MQ=255) cAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAGTCttc > 1:678834/1‑139 (MQ=255) cAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGATTTTTAAATATGGCGCTTCATAGAGTCATTCTGTAAAGGTCCAATTCTCGTTTTCATTCCTCTGTTTTTTCTTa > 1:28223/1‑140 (MQ=255) aGTATTGTCAATATATTCAAGGCAATCTGCCTCTTCATCCTCTTCATCCTCATCGTCTTGGTAGCTTTTTAAATATGGCGCTTCAGAGAGTAATTCTGTATAGGTCCAATTCTCGTTTTCATACCTCGGTATAATCTTAc < 2:269787/140‑1 (MQ=255) tATTGTCAATATATTCAAGGCCATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTTTGTTAAGGTCTAATTCTTTTTTTAATATCTTCGTATGATGtttgtt > 1:156227/1‑136 (MQ=255) tATTGTCAATATATTCAAGGCAATCTGCCTACTCATCCTCTTCATCCTCTTCGTCTGGGTAGCGTTTTAAATATGGCACTTCATAGAGTAATTCTGTAAAGGTCCAATTCTAGTTTTCATGGCTTAGTATAATCTTAACt > 2:30188/1‑140 (MQ=255) aTTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAATCTTACCTa > 1:70192/1‑140 (MQ=255) ttGTTAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCAAATTCTCGTTTTCATACCTAGGTATAATCTTCCCTAt > 2:550075/1‑140 (MQ=255) gTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAATCTTACCTATCa > 2:455722/1‑140 (MQ=255) | CCTATGCCTTGCCCCCTGAAATCCTTACATACGGCGATATCTTCTATATAAGCGTACCGGTTCCAATTTTTTCGCAGTTTAACTTTTCCGACGCATTTATCGTCTTGGTAGTAAAGATATATTATCTTATCAGTATTGTCAATATATTCAAGGCAATCTGCCTCCTCATCCTCTTCATCCTCTTCGTCTTGGTAGCTTTTTAAATATGGCGCTTCATAGAGTAATTCTGTAAAGGTCCAATTCTCGTTTTCATACCTCGGTATAATCTTACCTATCAC > CP000731/15274‑15551 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |