| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,532,298 | A→T | 100% | T15T (ACA→ACT) | femA_3 → | Aminoacyltransferase FemA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,532,298 | 0 | A | T | 100.0% | 265.9 / NA | 83 | T15T (ACA→ACT) | femA_3 | Aminoacyltransferase FemA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (31/52); total (31/52) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
TGTGTATTTGTAATCAGTTTTTGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACAACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGACAGAAGCAC > USA300TCH1516_ALE/2532161‑2532434 | tgtgTATTTGTAATCAGTTTTTGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTtactac > 1:51642/1‑140 (MQ=255) gtAGTTGTAATCAGTGTTTGATAAAATAAAAAAAGAGCATTAGTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACaaa < 1:49004/140‑1 (MQ=255) tAATCAGTTTTTGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCAtttt < 1:670908/140‑1 (MQ=255) aaaTCAGTTTTTGATAAAAGAAAAAAATAGCACTAGTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCAtttt < 1:594332/139‑1 (MQ=255) cAGTTTTTGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTcac > 1:483283/1‑140 (MQ=255) cAGTTTTTGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTcac < 1:374724/140‑1 (MQ=255) cAGTTGTTGAGAAAATAAATAAATAGCATTAGTAATAAAGTGAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTcac < 2:321454/140‑1 (MQ=255) gTTTTTGATAAAATAAAAAAATAGCATTCTTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGGGTTCAATGCGTTTACTACAAAGCATTTTTCACAt > 1:144793/1‑140 (MQ=255) gTTTTTGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACAt > 1:59835/1‑140 (MQ=255) ttGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGATATTAAATTAA‑AATGGAACTTTGCATTCTAGTTCTGACAATGCGTTTACTACAAAGCATTTTTCACATTaca < 1:517976/140‑1 (MQ=255) gATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGCTGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTacaca > 1:503113/1‑140 (MQ=255) gATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAGGCATTTTTCACATTacaca > 1:81086/1‑140 (MQ=255) gATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTacaca > 1:616523/1‑140 (MQ=255) gATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTacaca < 2:142414/140‑1 (MQ=255) gATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTACAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTGCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCGCATTacaca > 1:418496/1‑140 (MQ=255) aaaaaaaTAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGc < 1:397538/140‑1 (MQ=255) aaaaaaaTAGCATTATTAATAAATGCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGc < 1:329337/140‑1 (MQ=255) aaaaaaTAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCt < 2:634037/140‑1 (MQ=255) aaaaaaTAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATT‑‑ACACAATCAGCTAt > 2:190222/1‑140 (MQ=255) aaaaaTAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTa < 1:86395/140‑1 (MQ=255) aaaaTAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACGTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCAGATTACAAGCAATCAGcatt > 2:145423/1‑137 (MQ=255) aGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCAta > 1:203874/1‑139 (MQ=255) aGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTGGAATTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACGATCAGCTCTTCGtt > 1:25536/1‑140 (MQ=255) aGCAGTATTGATAAATTCAAAAATTATGGTTCAATTCATAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCAtt < 2:64984/140‑1 (MQ=255) cATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTAc < 2:350457/140‑1 (MQ=255) attattAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACa > 1:20022/1‑140 (MQ=255) taataaATTCAAAAATTATATTGCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGTCTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCAt < 2:40069/140‑1 (MQ=255) taataaATTCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCAt < 2:221230/140‑1 (MQ=255) aataaATTCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATa < 1:3447/140‑1 (MQ=255) ataaATTCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATag < 1:509014/140‑1 (MQ=255) aaTTCGAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGt < 2:587943/140‑1 (MQ=255) aaTTCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTCCTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGt < 1:267559/140‑1 (MQ=255) aaTTCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGt < 2:501818/140‑1 (MQ=255) aTTCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑TATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGtt < 1:335846/140‑1 (MQ=255) ttCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTg < 1:530401/140‑1 (MQ=255) ttCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACAGTACACACAATCAGCTATTCATCACAATCATAGAGTTg > 1:608054/1‑140 (MQ=255) aTTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCCGCTATCCATTACAAGCATAGAGTTGATTTaaa > 2:457193/1‑140 (MQ=255) aGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTTTTTTTTTACTCAATAAGCTATTCATTACAATCATATTTTTGATTTaatgggct > 2:224399/1‑134 (MQ=255) gTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATGCAGTTGATTTAAAAGGcca > 2:637981/1‑138 (MQ=255) atccAGCGAGGAATTG‑GAGAAAATACCCTTTGTAACGTTGACTTCGAATACCTTCACTATTTTTACTACAAAGCATTTTTCACATTACACACAATAAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGc < 2:282069/137‑1 (MQ=255) agagagagATGG‑GATAAAATGAACTTTGTAACGTTGACGTCGGATGAGTTCAATGCGGTTACTACAAAGAATTTTTCACAATACAGACAATCCGCTATTCATTACAATCATAGAGTTGATGTAAAAGGCGATGTGCAtat > 2:661702/1‑138 (MQ=255) agagagGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCt < 2:179466/140‑1 (MQ=255) gagagGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCtt < 2:375438/140‑1 (MQ=255) agagGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTg < 2:51642/140‑1 (MQ=255) agGGATGG‑GCTAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTa < 2:602678/140‑1 (MQ=255) gggatgg‑gatAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATACAGTTGATTTAAAAAGCGATGTGCATCTTGTAg > 2:66495/1‑140 (MQ=255) gggatgg‑gatAAAATGAACTTGGTAGCGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCGATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAg < 2:394351/140‑1 (MQ=255) ggatgg‑gatAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAgg > 2:482817/1‑140 (MQ=255) ggatgg‑gatAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTCCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAgg > 2:569205/1‑140 (MQ=255) gatgc‑gatAAAATGATCTTTGGAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTTAAAGGCGATGTGCATCTTGTAggg < 2:319141/140‑1 (MQ=255) gatAAAATGTCGTTAGTAGCTTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTaa < 2:275674/140‑1 (MQ=255) atAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTaaa < 1:171651/140‑1 (MQ=255) atAAAATGAACTTTGGAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTaaa < 1:286245/140‑1 (MQ=255) tAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACCTTACACACAATCAGCTATTCATTACAATCATAGAGTTGTTTTTTAAGGCTATGGGCATCTTGTAGGGGTTAAAg < 2:348961/140‑1 (MQ=255) aaTGGACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATg < 2:305456/140‑1 (MQ=255) aaTGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAgagaca > 1:508497/1‑138 (MQ=255) aaTGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATg < 1:482285/140‑1 (MQ=255) aaTGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATg < 1:564745/140‑1 (MQ=255) aaTGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATg < 1:229653/140‑1 (MQ=255) cTTTGTAACGTTGACTTCGGATGAGTCCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATg > 2:153750/1‑140 (MQ=255) tttGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATgg < 1:206177/140‑1 (MQ=255) tGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGACGTGCATCTTGTAGGGGTTAAAGATGACAATGGTc < 1:106177/140‑1 (MQ=255) gTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCa < 1:606898/140‑1 (MQ=255) gTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTACATCTTGTAGGGGTTAAAGATGACAATGGTCa < 1:95515/140‑1 (MQ=255) gTAACGATGACTTCGGATGAGTTTAATGCGAATACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCAACTAGTAGGGGTGAAAGATGACAATGGTCa > 2:468273/1‑140 (MQ=255) tAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGCGTTGATTTAAAAGGCGCTGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCaa > 1:482476/1‑140 (MQ=255) aCGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGt < 2:537672/140‑1 (MQ=255) aCGGTGACGTCGGATGAGTTCAAGGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGt < 1:340099/140‑1 (MQ=255) cGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTg < 2:637468/140‑1 (MQ=255) ttGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGAt > 1:421785/1‑140 (MQ=255) ttGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGAt < 2:580542/140‑1 (MQ=255) tggattgcGGATCAGTTCCAGTCGTTTACTACAAAGCATTTTTCACGTTACACACCATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGAt < 2:172584/133‑1 (MQ=255) cGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAACGGCGAGGTGCAACACGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGa > 2:681873/1‑140 (MQ=255) cGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGa > 2:415878/1‑140 (MQ=255) gATGAGTTGAATGCGTTTACTATAAGGCATTGTTCAGATTACACACAAGCAGCTATTCATTACAGTCATAGAGTTGATTTAAGAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATg < 2:118244/140‑1 (MQ=255) tGAGTTGAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCt < 2:582502/140‑1 (MQ=255) gTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGCGATTGCAGGATGATTAt > 2:699492/1‑140 (MQ=255) aaTGCGTTTACTACAAAGCATTTTTCACATTACACACACTCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGag > 2:368044/1‑139 (MQ=255) gTTTACTACAAAGCATTCTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTAATTAACAGAAg > 2:287362/1‑140 (MQ=255) tttACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTCATTGACAGAAgc > 1:699488/1‑140 (MQ=255) ttACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGACAGAAgca < 1:700019/140‑1 (MQ=255) ttACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGACAGAAgca < 1:332439/140‑1 (MQ=255) ttACTACAAAGCATTTTTCACATTACACACAAGCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGACAGAAgca < 1:365163/140‑1 (MQ=255) ttACTACAAAGCATTCTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGACGACAATGGTCAAGTGATTGCAGGATGCTTATTGACAGAAgca < 1:94157/140‑1 (MQ=255) tactacAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGACAGAAgcac < 2:136411/140‑1 (MQ=255) | TGTGTATTTGTAATCAGTTTTTGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGG‑GATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACAACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGACAGAAGCAC > USA300TCH1516_ALE/2532161‑2532434 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |