| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,860,200 | C→T | 5.5% | R211C (CGT→TGT) | bceA_2 → | Bacitracin export ATP‑binding protein BceA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,860,200 | 0 | C | T | 5.5% | 210.6 / 2.3 | 72 | R211C (CGT→TGT) | bceA_2 | Bacitracin export ATP‑binding protein BceA |
| Reads supporting (aligned to +/- strand): ref base C (34/34); new base T (2/2); total (36/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.59e-01 | |||||||||||
ATGAGCCAACAGGCGCACTCGACTCGAAAAGTGCAAATGACCTATTACAACGTTTGGAAGAAATGAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAGACATTGTACATCTTCAATCAGTATTAGGTGGTGTCTCAAATGACATTTAACCATATCGTT > USA300TCH1516_ALE/2860069‑2860338 | aTGAGCCAACACGCGCATGCGACTCGAAAAGTGCAAATGATCTATTACAACGTTTGGAAGAAATGAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGtcatc < 2:89013/140‑1 (MQ=255)aTGAGACAACAGGCGCACTCGACTCGAAAAGTGCAAATGACCTATTACAACGTTTGGAAGAAATGAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGtcatc < 1:572354/140‑1 (MQ=255) tGAGCCATCAGGCGCACTCGACTCGAAAAGTGCAAATGACCTATTACAACGTTTGGAAGAAATGAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGtcatca < 2:368308/140‑1 (MQ=255) tGAGCCAACAGGCGCACTCGACACGAAAAGTGCAAATGACCTATAACAACGTTTGGAAGAAATGAATAAATCGTTTGATACAGCTATTGTCATGACTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGacgtca > 1:276330/1‑140 (MQ=255) gagaCAACAGGCGCACTCGACTCGAAAAGAGAAACTGCTCTATTACAACGTTTGGAAGAAATGAATAAATCGTTTGATACAACTATTGTCATGGTTACAACTAA‑TCCGGTTTCAGCAAGTTTTGCATAACGTTTcattat > 2:216765/1‑140 (MQ=255) gCCAACAGGCGCACGCGACGCGAAAGGTGCAAATGACCTATTACAACGTTTGGAAGAAATGAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGc < 2:257169/140‑1 (MQ=255) gcACTCTACTCGAAAAGTGCAAATGACCTATTACAACGTTTGGAAGAAATGAATAAATCGTTTGATACAACGATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATgg < 2:647406/140‑1 (MQ=255) gcACTCGACTCGAAAAGTGCAAATGACCTATTACAACGTTTGGAAGAAATGAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TGCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTCAAAGATgg > 1:137015/1‑140 (MQ=255) gcACTCGACTCGAAAAGTCCAAATGACCTATTACAACGTTTGGAAGAAATGAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATgg > 1:447602/1‑140 (MQ=255) gcACTCAGCTCGAAAAGTGCAAATGATCTATTAAAACGATTGGAAGAAATGCATAAATCGTTTGATACAACTATTGGCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATgg < 2:539448/140‑1 (MQ=255) actcgactcgAAAAGTGCAAATGACCTATTACAACGTTTGGAAGAAATGAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGcc < 1:201507/140‑1 (MQ=255) ctcgactcgaAAAGTGCAAATGACCTATTACAACGTTTGGAAGAAATGAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCa > 2:298720/1‑140 (MQ=255) cgactcgaAAAGTGCAAATGACCTATTACAACGTTTGGAAGAAATGAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCaac > 2:271854/1‑139 (MQ=255) cgactcgaAAAGTGCAAATGACCTATTACAACGTTTGGAAGAAATGAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCaaa < 1:52499/140‑1 (MQ=255) ctcgaAAAGTGCAAATGACCTATTACAACGTTTGGACGAAATGAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCCAGTTTTGCAGAACGTGTCCTCATGCTCAAAGATGGCCACAtcc > 2:275922/1‑138 (MQ=255) ctcgaAAAGTGCAAATGACCTATTACAACGTTTGGAAGAAATGAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTc > 1:122095/1‑140 (MQ=255) gaAAAGTGCAAATGACCTATTACAACGTTTGGAAGAAATGAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATa > 1:397259/1‑140 (MQ=255) aaGTTCAAATGACCTATTACAACGTTTGGAAGAAATGAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGTCCAAATTCATacac < 1:368208/140‑1 (MQ=255) aGTGCAAATGACCTATTACAACGTTTGGAAGAAATGAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAACTTCATAcaca > 1:241022/1‑140 (MQ=255) cgCAAATGACCTATTACATCGTTTGCAAGAAAAAAATACACCCTTCCTCACAACTATTGTCATGATAACACCCCC‑CCAGGATCCAGCAAGTTTTGCAGAACGTCTCTTCCAGTTTGATGTGGGCCAAATTCATACACAAc < 2:181355/139‑1 (MQ=255) gCAAATGACCTATTACAACGTTTGGAAGAAATGAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTAGCAGAACGTGTCATCATGCTAAAAGATAGCCAAATTCATACAAAACt > 2:291368/1‑140 (MQ=255) tGACCTATTACAACGTTTGGAAGAAATGAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATc < 1:256256/140‑1 (MQ=255) aCCTATTACAACGTTTGGAAGAAATGAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAATGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCag > 1:133592/1‑140 (MQ=255) aCCTATTACAACGTTTGGAAGAAATGAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAATGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCag > 1:133594/1‑140 (MQ=255) aCCTATTACAACGTTTGGAAGAAATGAATAAATCGTTTGATAAAACGATACGCATGAAT‑CGATTCACACTCGCGGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCag > 1:701360/1‑140 (MQ=255) tATTACAACGTTTGGAAGAAATGAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGAGTCATAATGCTAAAAGATAGACCAATTCATACACAACATTATCagaag > 2:209424/1‑137 (MQ=255) aaCGTTTGGAAGAAATCAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGt < 1:535213/140‑1 (MQ=255) cGTTTGGAAGAAATGAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATCCGAAAAGACGGCCAAATTCAGACACAACCTTAACAGGAAGGAccaac > 2:70614/1‑136 (MQ=255) gaagaaATGAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACa < 2:538621/140‑1 (MQ=255) ataaaTGAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAgg < 2:492671/138‑1 (MQ=255) agaaATGAATAGATCGTTGGATACAACAATGGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCAGCATGCTAAAAGATGGCCAAATTCATACACAGCTTTATCAGGAAGGACGTTCTAAACAgg < 2:641204/140‑1 (MQ=255) agaaATGAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACGACTTTATCAGGAAGGACGTTCTAAACAgg > 1:372781/1‑140 (MQ=255) gaaATGAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGc < 1:643457/140‑1 (MQ=255) gaaATGAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGc < 1:536936/140‑1 (MQ=255) gaaATGAATAAAGCGTGTGATGCAACGATGGTCAGGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGc < 1:404075/140‑1 (MQ=255) gaaATCAACAAATGCTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATGCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGc < 1:606279/140‑1 (MQ=255) tGAATAAAGCGTTTGATACAACTGGTGGCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCttt < 1:168666/140‑1 (MQ=255) gAATAAATCGTTTGATACAACGATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAGCGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCtttt > 1:704744/1‑140 (MQ=255) aTAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTAt > 1:668006/1‑140 (MQ=255) aTAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTAt > 1:68121/1‑140 (MQ=255) aTCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAATGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAg < 2:133592/140‑1 (MQ=255) aTCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAATGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAg < 2:133594/140‑1 (MQ=255) aTCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAg < 2:701360/140‑1 (MQ=255) cGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAGAc < 1:141864/140‑1 (MQ=255) cGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAGAc < 1:427528/140‑1 (MQ=255) gTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCTTGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAGACa > 2:385127/1‑140 (MQ=255) ttGATACAACTATTGTCATGGTTACACAAGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAGACAtt > 2:219259/1‑140 (MQ=255) tGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAGACATTg > 2:561092/1‑140 (MQ=255) gATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAGACATTGt > 1:466508/1‑140 (MQ=255) aCTATTTTCATGGACACACAGGA‑TCCGGTTGCAGCATTGTTGGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAGACATTGTACATCt < 2:310011/140‑1 (MQ=255) tCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAGACATTGTACATCTTCAATCa > 2:502548/1‑140 (MQ=255) cATGGTGAAACATGA‑TCCGGTTGCAGCAAGCTTTGCAGAACGTGTCATCATGCTAAAAGAGGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCGAAACAGGCCTTTTATGAAGACATTGTACATCTTCAATCAg < 1:543045/140‑1 (MQ=255) tGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAGACATTGTACATCTTCACTCCGTa > 1:581133/1‑140 (MQ=255) tttACACCTGC‑TCCGGGTGCAGCAAGCTTTGCAGTCCGTGTAATCAATCTAAAAGATGGCCAAATTCATACACCACTTTATCAGGGAGGACGTTCTAAACAGGCTTTTTATGAAGACATTGTACATCTTCAATCAGTAtt < 2:496392/139‑1 (MQ=255) gTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTGTATCAGGAAGGACGTTCTAAACAGGTCTTTTATGAAGACAATGTACATCTTCAATCAGTAtt < 2:254208/140‑1 (MQ=255) tACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAGACATTGTACATCTTCAATCAGTATTAg > 1:427244/1‑140 (MQ=255) cacaTGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAGACATTGTACATCTTCAATCAGTATTAggt > 1:420151/1‑140 (MQ=255) acaTGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACACGCC‑TTTATGAAGACATTGTACATGTTCAATCAGAATTCggtgg > 2:647582/1‑140 (MQ=255) cgtGA‑TCCGGTTGCAGCAAGTTTTGCAGTACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAGACATTGTACATCTTCAATCAGTATGAggtgg < 2:594885/138‑1 (MQ=255) caTGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAGACATTGTACATCTTCAATCAGTATTAggtgg < 1:77633/140‑1 (MQ=255) tGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTATATGAAGACATTGTACATCTTCAATCAGTATTAGgtggtg > 2:643943/1‑140 (MQ=255) ccGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAGACATTGTACATCTTCAATCAGTATTAGGTGGTGtctc > 1:617754/1‑140 (MQ=255) ggTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAGACATTGTACATCTTCAATCAGTATTAGGTGGTGTCTCaa > 1:452337/1‑140 (MQ=255) ttGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACGTTGTCTGGGTGGAAGATCTAAACAGGCCTTTTATGAAGACATTGTACATCTTCAATCAGTATTAGGTGGTGTCTCaaag > 1:328315/1‑139 (MQ=255) tGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAGACATTGTACATCTTCAATCAGTATTAGGTGGTGTCTCAAATg > 1:354165/1‑140 (MQ=255) aGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAGACATTGTACATCTTCAATCAGTATTAGGTGGTGTCTCAAATGACATTTa > 1:529059/1‑140 (MQ=255) tGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAGACATTGTACATCTTCAATCAGTATTAGGTGGTGTCTCAAATGACATTTAACCat < 1:490696/140‑1 (MQ=255) tGCAGAACGTGTCATCATGCTAAAAGATCGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAGACATTGTACATCTTCAATCAGTATTAGGTGGTGTCTCAAATGACATTTAACCat < 1:397633/140‑1 (MQ=255) ggCAGAACGTGTCATCATGCGAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAGACATTGTACATCTTCAATCAGTATTAGGTGGTGTCTCAAATGACATTTAACCag < 1:235305/139‑2 (MQ=255) aaCGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAGACATTGTACATCTTCAATCAGTATTAGGTGGTGTCTCAAATGACATTTAACCATATCGt < 1:524393/140‑1 (MQ=255) aCGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAGACATTGTACATCTTCAATCAGTATTAGGTGGTGTCTCAAATGACATTTAACCATATCGtt > 1:82715/1‑140 (MQ=255) aCGTGTAATCATGCTAAAATATGGTCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAGACATTGTACATCTTCAATCAGTATTAGGTGGTGTCTCAAATGACATTTAACCATATCGtt < 1:115586/140‑1 (MQ=255) | ATGAGCCAACAGGCGCACTCGACTCGAAAAGTGCAAATGACCTATTACAACGTTTGGAAGAAATGAATAAATCGTTTGATACAACTATTGTCATGGTTACACATGA‑TCCGGTTGCAGCAAGTTTTGCAGAACGTGTCATCATGCTAAAAGATGGCCAAATTCATACACAACTTTATCAGGAAGGACGTTCTAAACAGGCCTTTTATGAAGACATTGTACATCTTCAATCAGTATTAGGTGGTGTCTCAAATGACATTTAACCATATCGTT > USA300TCH1516_ALE/2860069‑2860338 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |