| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,825,493 | T→C | intergenic (‑308/+540) | cap8A_2 ← / ← icaR | Capsular polysaccharide type 8 biosynthesis protein cap8A/Biofilm operon icaADBC HTH‑type negative transcriptional regulator IcaR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,825,493 | 0 | T | C | 100.0% | 70.5 / NA | 22 | intergenic (‑308/+540) | cap8A_2/icaR | Capsular polysaccharide type 8 biosynthesis protein cap8A/Biofilm operon icaADBC HTH‑type negative transcriptional regulator IcaR |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (9/13); total (9/13) | |||||||||||
CTTATTTATATTTTTGCACAAGATATAATATTGTCCAACTTTAAATATCCAAACCTATTAATAATAAAACTAGATACCATCGTACTCTATCATGGCTTTCTTATAATCGAGTAGAAGCATCATCATTACTTGATTATTTGCTCTTTACAACACCGAGCGTGCCCGTACTCGGTAATTCAATACCTTGCGTAACCCGTCACTGTGAGTTGGGTTAATGATAATAAAGCCCACACCTTTTAAAAAGATGTGGGTAATTTATATAATTTTTA > USA300TCH1516_ALE/2825355‑2825623 | cTTATTTATATTTTTGCACAAGATATAATATTGTCCAACTTTAAATATCCAAACCTATTAATAATAAAACTAGATACCATCGTACTCTATCATGGCTTTCTTATAATCGAGTAGAAGCATCATCATTACTTGATTATTCGc > 2:179442/1‑141 (MQ=255) tttGCACAAGATATAATATTGTCCAACTTTAAATATCCAAACCTATTAATAATAATACTAAATACCGTCGTACTCTATCATGGCTTTCTTATAATCGAGTAGAAGCATCATCATTACTTGATTATTCGCTCTTTACAacac < 2:200962/141‑1 (MQ=255) tGCACAAGAGATAATATTGTCCAACTTTAAATATCCAAACCTATTAATAATAAAACTAGATACCATCGTACTCTATCATGGCTTTCTTATAATCGAGTAGAAGCATCATCATTACTTGATTATTCGCTCTTTACAACACCg < 1:23076/141‑1 (MQ=255) gCACAAGATATAATATTGTCCAACTTTAAATATCCAAACCTATTAATAATAAAACTAGATACCATCGTACTCTATCATGGCTTTCTTATAATCGAGTAGAAGCATCATCATTACTTGATTATTCGCTCTTTACAACACCGa > 1:28315/1‑141 (MQ=255) taataTTGTCCAACTTTAAATATCCAAACCTATTAATAATAAAACTAGATACCATCGTACTCTATCATGGCTTTCTTATAATCGAGTAGAAGCATCATCATTACTTGATTATTCGCTCTTTACAACACCGAGCGTGCCCGt < 1:146077/141‑1 (MQ=255) taataTTGTCCAACTTTAAATATCCAAACCTATTAATAATAAAACTAGATACCATCGTACTCTATCATCGCTTTCTTATAATCGAGTAGAAGCATCATCATTACTTGATTATTCGCTCTTTACAACACCGAGCGTGCCCGt < 2:278474/141‑1 (MQ=255) taataTTGTCCAACTGTAAATATCCAAACCTATTAATAATAAAACTAGATACCATCGTACTCTATCATGGCTTTCTTATAATCGAGTAGAAGCATCATCATTACTTGATTATTCGCTCTTTACAACACCGAGCGTGCCCGt < 1:87582/141‑1 (MQ=255) tatTGTCCAACTTTAAATATCCAAACCTATTAATAATAAAACTAGATACAATAGTACTCTAGCATGGCTTTCTTATAATCGAGTAGAAGCATCATCATTACTTGATTATTCGCTCTTTACAACACCGAGCGTGCCCGTACt < 1:266631/141‑1 (MQ=255) aaCTTTAAATATCCAAACCTATTAATAATAAAACTAGATACCATCGTACTCTATCATGGCTTTCTTATAATCGAGTAGAAGCATCATCATTACTTGATTATTCGCTCTTTACAACACCGAGCGTGCCCGTACTCGGTAAtt > 1:113420/1‑141 (MQ=255) aTTAATAATAAAACTAGATACCATCGTACTCTATCATGGCTTTCTTATAATCGAGTAGAAGCATCATCATTACTTGATTATTCGCTCTTTACAACACCGAGCGTGCCCGTACTCGGTAATTCAATACCTTGCGTAACCCGt < 1:123830/141‑1 (MQ=255) aataataaAACTAGATACCATCGTACTCTATCATGGCTTTCTTATAATCGAGTAGAAGCATCATCATTACTTGATTATTCGCTCTTTACAACACCGAGCGTGCCCGTACTCGGTAATTCAATACCTTGCGTAACCCGTCAc > 2:141769/1‑141 (MQ=255) aGATACCATCGTACTCTATCATGGCTTTCTTATAATCGAGTAGAAGCATCATCATTACTTGATTATTCGCTCTTTACAACACCGAGCGTGCCCGTACTCGGTAATTCAATACCTTGCGTAACCCGTCACTGTGAGTTGGGt < 1:29521/141‑1 (MQ=255) cttACTCTATCATGGTTTTTTTATAATCTAGTAGAAGCATCATCATTACTTGATTATTCGCTCTTTACAACACCGAGCGTGCCCGTACTCGGTAATTCAATACCTTGCGTAACCCGTCACTGTGAGTTGGGTTAATGataa < 2:256468/139‑1 (MQ=255) tACTCTATCATGGCTTTCTTATAATCGAGTAGAAGCATCATCATTACTTGATTATTCGCTCTTTACAACACCGAGCGTGCCCGTACTCGGTAATTCAATACCTTGCGTAACCCGTCCCTGTGAGTTGGGTTAATGatacta > 2:45899/1‑141 (MQ=255) ataATCGAGTAGAAGCATCATCATTACTTGATTATTCGCTCTTTACAACACCGAGCGTGCCCGTACTCGGTAATTCAATACCTTGCGTAACCCGTCACTGTGAGTTGGGTTAATGATAATAAAGCCCACACCTTTTaaaaa > 2:78766/1‑141 (MQ=255) tAGAAGCATCATCATTACTTGATTATTCGCTCTTTACAACACCGAGCGTGCCCGTACTCGGTAATTCAATACCTTGCGTAACCCGTCACTGTGAGTTGGGTTAATGATAATAAAGCCCACACCTTTTAAAAAGATGTGGGt > 2:225659/1‑141 (MQ=255) aaGCATCATCATTACTTGATTATTCGCTCTTTACAACACCGAGCGTGCCCGTACTCGGTAATTCAATACCTTGCGTAACCCGTCACTGTGAGTTGGGTTAATGATAATAAAGCCCAGACCTTTTAAAAAGATGTGGGTact > 1:259580/1‑139 (MQ=255) aGCATCATCATTACTTGATTATTCGCTCTTTACAACGCCGCGCGTCCCCGGACTCGGTAATTCAATACCTTGCGTAACCCGTCACTGTGAGTTGGGTTAATGATAATAAAGCCCACACCTTTTAAAAAGATGTGGGTAAtt < 1:106610/141‑1 (MQ=255) tcatcatTACTTGATTATTCGCTCTTTACAACACCGAGCGTGCCCGTACTCGGTAATTCAATACCTTGCGTAACCCGTCACTGTGAGTTGGGTTAATGATAATAAAGCCCACACCTTTTAAAAAGATGTGGGTAATTtata < 1:141769/141‑1 (MQ=255) atcatTACTTGATTATTCGCTCTTTACAACACCGAGCGTGCCCGTACTCGGTAATTCAATACCTTGCGTAACCCGTCACTGTGAGTTGGGTTAATGATAATACAGCCCACACCTCTCCAACAGATGTGGGTAATTtatata < 1:282116/141‑1 (MQ=255) tACTTGATTATTCGCTCTTTACAACACCGAGCGTCCCAACACTGGTGAAGGCAATACCTTGCGTAACCCGTCACTGTGAGTTGGGTTAATGATAATAAAGCCCACACCTTTTAAAAAGATGTGGGTAATTTATATAAtttt < 1:52590/141‑1 (MQ=255) cTTGATTATTCGCTCTTTACAACACCGAGCGTGCCCGTACTCGGTAATTCAATACCTTGCGTAACCCGTCACTGTGAGTTGGGTTAATGATAATAAAGCCCACACCTTTTAAAAAGATGTGGGTAATTTATATACTTttta > 2:107789/1‑141 (MQ=255) | CTTATTTATATTTTTGCACAAGATATAATATTGTCCAACTTTAAATATCCAAACCTATTAATAATAAAACTAGATACCATCGTACTCTATCATGGCTTTCTTATAATCGAGTAGAAGCATCATCATTACTTGATTATTTGCTCTTTACAACACCGAGCGTGCCCGTACTCGGTAATTCAATACCTTGCGTAACCCGTCACTGTGAGTTGGGTTAATGATAATAAAGCCCACACCTTTTAAAAAGATGTGGGTAATTTATATAATTTTTA > USA300TCH1516_ALE/2825355‑2825623 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |