| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 515917 | NA (NA) | 10 (0.040) | 6/146 | NT | NA | intergenic (+3985/‑2778) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 515920 | NA (NA) | intergenic (+3988/‑2775) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
Only 100 of 309 total aligned reads displayed.
GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/515821‑515917‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgtccAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTT < USA300TCH1516_ALE/515920‑515831 GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA > 2:1838518/1‑91GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA > 1:2980847/1‑91GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA < 1:4829748/91‑1GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA > 1:5505124/1‑91GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA < 1:970887/91‑1GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA > 2:3699108/1‑91GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA > 2:390470/1‑91GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA < 1:1686770/91‑1GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA < 2:4955852/91‑1GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA > 2:508378/1‑91GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGA < 2:5606760/91‑1 CCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGAT < 2:2003550/91‑1 CCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGAT < 2:1720331/91‑1 CCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGAT < 1:4994588/91‑1 CCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGAT < 2:5271269/91‑1 CCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGAT < 1:3809745/91‑1 CCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGAT < 1:363594/91‑1 CATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATT < 2:4650131/91‑1 CATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATT < 2:2508219/91‑1 CATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATT < 1:1232665/91‑1 CATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATT > 2:1032340/1‑91 CATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATT < 1:568038/91‑1 CATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATT < 1:3455708/91‑1 ATCATTTAAAGAGTGCGTAATGGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTG < 1:341133/91‑1 ATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTG < 2:1127485/91‑1 ATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTG < 2:1226584/91‑1 ATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTG < 2:324746/91‑1 ATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTG > 1:1714552/1‑91 ATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTG > 1:1300191/1‑91 ATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTG < 2:4099790/91‑1 ATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTG < 1:3913261/91‑1 ATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTG < 1:3966232/91‑1 ATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTG < 2:4375699/91‑1 ATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTG < 2:1628847/91‑1 ATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTG < 2:1586041/91‑1 TCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGT > 1:516635/1‑91 TCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGT < 2:4870032/91‑1 TCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGT > 1:2827427/1‑91 TCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGT > 1:3190716/1‑91 CATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTC > 2:5131994/1‑91 CATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTC > 1:894039/1‑91 CATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTC > 2:801527/1‑91 CATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTC > 2:466229/1‑91 ATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCC > 1:2508663/1‑91 ATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCC < 1:941759/91‑1 ATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCC < 2:2923875/91‑1 ATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCC > 1:787300/1‑91 ATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCC > 1:1035833/1‑91 ATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCC < 1:1432135/91‑1 ATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCC > 1:4696886/1‑91 TTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACGGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCA < 1:4863541/91‑1 TTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAA < 1:5074473/91‑1 TTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAA < 2:62467/91‑1 TTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAA < 2:2626441/91‑1 TAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAAA < 1:4508932/91‑1 TAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAAA < 2:542512/91‑1 AAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAAAGG < 1:2944270/91‑1 AGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAAAGGA < 2:143354/91‑1 GAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAAAGGAC < 2:3476282/91‑1 GAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAAAGGAC < 1:1588565/91‑1 GAGTGACACTGCGCCGAAAATGTACCGGGGCCAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATCCACAGCTTCGGTAATATGT > 1:4208618/1‑91 TACCGAAGCTGTGGATTGTCCTTTGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAG > 2:4508131/1‑91 tATTGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGC < 1:2416745/90‑1 ATTGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCA > 1:1631910/1‑91 ATTGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCA > 1:1907601/1‑91 ATTGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCA > 2:2134185/1‑91 ATTGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCA > 1:2639752/1‑91 ATTGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCA < 1:4124087/91‑1 ATTGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCA < 1:2736564/91‑1 ATTGTCCAAAGCACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCA < 2:1928683/91‑1 TTGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCAC < 2:4157919/91‑1 TTGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCAC < 1:2262478/91‑1 TTGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCAC > 1:3861385/1‑91 TTGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCAC < 2:1349052/91‑1 taTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACT > 2:4734284/3‑91 TGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACc > 2:2288459/1‑90 TGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACc > 2:1827469/1‑90 TGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACT > 2:2812858/1‑91 TGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACT > 1:4058578/1‑91 TGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACT > 2:5033486/1‑91 TGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACT > 1:2696087/1‑91 TGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACT > 1:2042928/1‑91 GTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTC < 2:1641791/91‑1 GTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTC > 1:2780710/1‑91 TCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCT > 1:3059968/1‑91 TCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCT < 1:5357201/91‑1 TCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCT < 1:5256175/91‑1 TCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCT > 2:5479986/1‑91 CCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTT > 2:4012047/1‑91 CCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTT > 2:4899347/1‑91 CCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTT < 2:241101/91‑1 CCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTT < 1:2870803/91‑1 CCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTT > 1:3117462/1‑91 CAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTT < 1:233412/91‑1 CAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTT > 2:2234250/1‑91 CAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTT > 2:3865908/1‑91 CAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTT > 1:1765561/1‑91 CAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTT < 2:3648485/91‑1 CAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTT < 2:3326637/91‑1 CAAACGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTT < 2:3078253/91‑1 GCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/515821‑515917‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgtccAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTT < USA300TCH1516_ALE/515920‑515831 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |