| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 517440 = | NA (NA) | 21 (0.080) | 13/146 | NT | NA | intergenic (+5508/‑1255) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | 517458 = | NA (NA) | intergenic (+5526/‑1237) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
Only 100 of 332 total aligned reads displayed.
ATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/517536‑517440‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctatgTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGAT > USA300TCH1516_ALE/517458‑517547 TCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATTCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAG > 1:2842998/1‑91 TCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAG > 2:2299796/1‑91 TCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAG < 2:1996260/91‑1 TCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAG > 1:1345768/1‑91 TCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAG > 1:5111698/1‑91 TCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAG > 1:3715208/1‑91 TCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAG < 2:5019607/91‑1 TCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAG > 2:1221231/1‑91 TCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGCCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAG > 2:3315409/1‑91 CTTATAACCGCAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTTAGCACTTATCCCGTCCACACATAGCTACCCAGC < 1:5626307/91‑1 CTTATAACCGAAGTTGGGAAATCTGATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 1:5353129/91‑1 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCGGTCCACACATAGCTACCCAGC < 1:787481/91‑1 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 1:4591710/91‑1 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 2:3443382/91‑1 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 1:3634173/91‑1 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 1:3297028/91‑1 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 1:3228844/91‑1 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 1:3138083/91‑1 CTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGATTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGC < 1:4243263/91‑1 TTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCT < 2:4359778/91‑1 TTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCT < 2:3126993/91‑1 TTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCT > 1:3422628/1‑91 TTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCT < 1:3460125/91‑1 TTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCT < 1:1248666/91‑1 TTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCT < 2:488084/91‑1 TATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTA < 2:4784116/91‑1 TATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTA < 1:1485320/91‑1 TATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTA > 1:5368555/1‑91 TATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTA < 1:115988/91‑1 TATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTA < 1:4404751/91‑1 TATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTA < 1:840878/91‑1 TATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTA < 2:5393103/91‑1 TATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTA < 2:325711/91‑1 TATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTA > 2:239672/1‑91 TATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTA < 1:3499476/91‑1 TATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTA < 1:2710702/91‑1 TATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCCTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTA > 2:5476534/1‑91 ATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTAT > 2:1340898/1‑91 ATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTAT < 1:2377556/91‑1 ATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTAT < 2:659241/91‑1 ATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTAT > 2:566445/1‑91 ATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTAT > 1:5232798/1‑91 TAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATG < 2:4630903/91‑1 TAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATG < 1:1019103/91‑1 TAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATG < 2:2142095/91‑1 TAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATG < 1:4752219/91‑1 TAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATG < 2:3566270/91‑1 TAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATG > 1:96420/1‑91 TAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATG < 2:526063/91‑1 TAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATG < 1:261199/91‑1 aggTGGGAAATCTCATCTTGAGGGGGGCTTCATGCGTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATGTGTGGAC < 2:3368817/88‑1 ATCTTGAGTGCGGCTTCATGCTTAGATGCTTTCAGCACTGATCCCGTCCACACAGAGCTGGGTAGCTATGTGTGGACGGGATAAGTGCTGA < 2:1830624/91‑1 gAGATGCTTTCAGCACTTATCCCTGCCACACATAGCTGGGTAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCC < 1:5649215/90‑1 ACATAGCTACCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTT > 1:2475866/1‑91 GCTACCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAG > 2:3714318/1‑91 CTACCCAGCTATGGGTGGCCGGTATAAGTGCAGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGA > 2:4326129/1‑91 TACCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGAT > 1:4279274/1‑91 TACCCAGCTATGCGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGAT > 1:1686628/1‑91 ACCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATC > 2:3893314/1‑91 ACCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATC > 1:1189159/1‑91 CCCAGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCC > 2:2816599/1‑91 AGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTC < 1:746695/91‑1 AGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTC < 1:213737/91‑1 AGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTC < 1:663830/91‑1 AGCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTC > 1:4316480/1‑91 GCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCA > 1:3126185/1‑91 GCTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCA > 1:367566/1‑91 CTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAA < 2:1608465/91‑1 CTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAA > 1:2229214/1‑91 CTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAA < 2:1414581/91‑1 CTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAA < 2:4177165/91‑1 CTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAA > 2:4062431/1‑91 CTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAA < 1:4175280/91‑1 CTATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAA < 1:4457793/91‑1 TATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAA < 2:1953644/91‑1 TATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAA > 2:889102/1‑91 TATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAA > 1:2070818/1‑91 TATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAA > 2:4972615/1‑91 TATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAA < 1:5014150/91‑1 TATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAA > 1:5473443/1‑91 TATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAA > 2:1978660/1‑91 TATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAA < 2:1549833/91‑1 TATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAA < 2:1475363/91‑1 TATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAA < 2:2614959/91‑1 TATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAA < 1:880317/91‑1 ATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGGTCCCTCAAAG < 2:4707188/91‑1 ATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAG > 1:4927236/1‑91 ATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAG > 1:297354/1‑91 ATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAG < 2:3226126/91‑1 ATGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAG > 1:1093638/1‑91 TGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGA > 1:3962545/1‑91 TGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGA < 2:3018366/91‑1 TGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGA < 2:2099927/91‑1 TGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGA < 2:3845142/91‑1 TGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGA > 1:2038470/1‑91 TGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGA < 1:1750467/91‑1 TGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGA < 2:1717813/91‑1 TGTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCACCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGA < 1:101092/91‑1 GTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGAT > 2:3992642/1‑91 GTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGAT > 1:1789173/1‑91 ATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGCTTCATGCTTAGATGCTTTCAGCACTTATCCCGTCCACACATAGCTACCCAGCTATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/517536‑517440‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctatgTGTGGACGGGATAAGTGCTGAAAGCATCTAAGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGAT > USA300TCH1516_ALE/517458‑517547 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |