| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1841996 | 219 (0.760) | 12 (0.050) | 9/134 | NT | 5.6% | intergenic (+36/+58) | htrA/tyrS | Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase |
| ? | USA300TCH1516_ALE | = 1842015 | 225 (0.940) | intergenic (+55/+39) | htrA/tyrS | Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase | |||||
Only 100 of 109 total aligned reads displayed.
ACCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1841894‑1841996‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agagcctactcatATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCCAGGTG < USA300TCH1516_ALE/1842015‑1841926 ACCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAA < 1:5057553/91‑1ACCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAA < 2:1977491/91‑1ACCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAA < 2:5584180/91‑1ACCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAA < 2:3109800/91‑1 CCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAG > 2:561333/1‑91 CCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAG > 2:1114739/1‑91 CCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAG > 1:3912440/1‑91 CCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAG < 2:2061933/91‑1 CCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAG < 2:2062627/91‑1 CAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCACGGCGATAGAGCTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGA < 2:1680142/91‑1 CAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGA < 1:2879693/91‑1 AAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAac < 1:4253361/91‑3 AAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGC < 1:5532803/91‑1 AAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGC < 2:1906371/91‑1 AAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGC < 2:1905895/91‑1 AAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGC < 2:1905142/91‑1 AAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGC < 1:2752706/91‑1 AAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGC > 1:3007494/1‑91 AACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTATAGACAGAAAAGTACATTAAGAGCC > 1:5339436/1‑91 AACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCC < 1:1562187/91‑1 AACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCC < 1:2739287/91‑1 AACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCC < 2:1462670/91‑1 AACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCC < 1:5578823/91‑1 ACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCT > 1:4887390/1‑91 ACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCT > 2:3371798/1‑91 CGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTA > 1:1729619/1‑91 GTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTAC > 2:4617708/1‑91 TCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACT < 2:4608648/91‑1 TCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACT < 2:4608708/91‑1 TCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACT < 2:4609178/91‑1 TCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACT > 2:3350404/1‑91 cgAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTC < 1:3582251/89‑1 CAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTGCTC < 2:1564420/91‑1 CAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTC > 2:1788771/1‑91 CAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTC < 2:1080069/91‑1 CAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTC > 1:1988759/1‑91 CAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTC > 1:2613000/1‑91 CAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTC > 2:3182386/1‑91 CAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATATCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTC > 1:1543965/1‑91 AAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT < 1:4896583/91‑1 AAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT < 1:3887743/91‑1 AAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT < 2:2584761/91‑1 AAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT < 1:1477690/91‑1 AAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT < 2:4390339/91‑1 AAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT < 1:428139/91‑1 AAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT < 1:3556860/91‑1 AAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT > 2:1021833/1‑91 GAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCT < 2:3838575/91‑1 ACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAA < 1:132734/91‑1 ACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAA < 1:132704/91‑1 ACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTC‑‑ATTCATTCCTAAGA < 1:422015/91‑1 ATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGT < 1:3379393/91‑1 TCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGGGCCTACTCATATTCATTCCTAAGAATGTA < 2:2886232/91‑1 TCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTA < 2:5093045/91‑1 CCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTAATG < 2:4419282/91‑1 GGCCAAGGCGATCGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTAATGAGT < 2:3629370/91‑1 GCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTAATGAGTA < 1:5269126/91‑1 AAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGA < 2:4906009/91‑1 AGAGCCTACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGC < 1:1618268/91‑1 AGAGCCTACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGC < 1:3020489/91‑1 AGAGCCTACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGC < 1:4303307/91‑1 AGAGCCTACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGC < 2:2281408/91‑1 AGAGCCTACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGC < 2:3896207/91‑1 GAGCCTACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCC > 1:2280179/1‑91 GAGCCTACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCC > 1:3157439/1‑91 GAGCCTACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCC > 2:2369543/1‑91 GAGCCTACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCC > 2:1285007/1‑91 GAGCCTACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCC < 1:4886412/91‑1 AGCCTACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCT > 2:1397568/1‑91 AGCCTACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCT > 1:218000/1‑91 AGCCTACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCT > 1:5033907/1‑91 AGCCTACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCT < 1:1739306/91‑1 GCCTACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTT > 2:4058249/1‑91 GCCTACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTT < 2:3172577/91‑1 GCCTACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTT > 2:4108314/1‑91 CCTACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTG < 1:1913081/91‑1 CCTACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTG < 1:1798363/91‑1 CCTACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTG > 2:4627080/1‑91 CCTACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTG > 1:72812/1‑91 CCTACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTG > 1:919531/1‑91 TACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGC < 1:3539747/91‑1 TACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGC < 1:3539748/91‑1 TACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGC > 1:176077/1‑91 ACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTATTTTTCTGTCTGTAAATTATCTAAAGAAATATCTATCGCCTTGGCC > 2:5547111/1‑91 ACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCC > 2:5256557/1‑91 ACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCC > 2:5256951/1‑91 ACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCC > 2:3222742/1‑91 ACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCC > 2:408340/1‑91 ACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCC > 1:978216/1‑91 ACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCC > 1:3422930/1‑91 ACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCC > 2:1537032/1‑91 ACTCATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCC > 1:726327/1‑91 CATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCCAGG < 1:4923362/91‑1 CATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCCAGG < 1:4923644/91‑1 CATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCCAGG < 1:4923742/91‑1 ATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCCAGGT < 2:4000345/91‑1 ATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCCAGGT > 1:2729751/1‑91 ATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCCAGGT > 2:1996681/1‑91 ATATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCCAGGT > 2:520743/1‑91 TATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCCAGGTG < 2:641358/91‑1 ACCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1841894‑1841996‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agagcctactcatATTCATTCCTAAGAATGTAATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCCAGGTG < USA300TCH1516_ALE/1842015‑1841926 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |