BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	854380 =	268 (0.930)	16 (0.060)	15/148	NT	5.9%	intergenic (‑275/‑460)	USA300HOU_RS04170/zipA_1	Epimerase family protein/Cell division protein ZipA
*	?	USA300TCH1516_ALE	854405 =	263 (0.990)	16 (0.060)	15/148	NT	5.9%	intergenic (‑300/‑435)	USA300HOU_RS04170/zipA_1	Epimerase family protein/Cell division protein ZipA

Only 100 of 355 total aligned reads displayed.

AAAAGTATGTGTAAAACGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAATATAACAATCTA  >  USA300TCH1516_ALE/854316‑854495

   aGTATGTGTAAAACGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGtttt                                                                                        <  2:4254517/91‑1 (MQ=255)

       tgtgTAAAACGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTtttatt                                                                                    >  2:2247084/1‑91 (MQ=255)

       tgtgTAAAACGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTtttatt                                                                                    >  1:2333009/1‑91 (MQ=255)

         tgtACAACGCTGCATGATACAAACGAAGGTAAAACTTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTtttattta                                                                                  >  1:3439171/1‑91 (MQ=255)

         tgtAAAACGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTtttatttt                                                                                  >  2:1008509/1‑90 (MQ=255)

         tgtAAAACGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTtttattta                                                                                  >  2:2965179/1‑91 (MQ=255)

         tgtAAAACGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTtttattta                                                                                  <  2:1381235/91‑1 (MQ=255)

          gtAAAACGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTttatttat                                                                                 >  1:757351/1‑91 (MQ=255)

           tAAAACGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTtatttatt                                                                                >  1:1103527/1‑91 (MQ=255)

              aaattaatgctttaaattgatgtataatgggaataagaaataaataaaaacgacccgtacgttaatcgtgcgggtcGTTTTTATTTATTTc                                                                              <  1:5564992‑M2/15‑1 (MQ=255)

              aaCGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCt                                                                             <  1:3271207/91‑1 (MQ=255)

               aCGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCtt                                                                            >  1:1717440/1‑91 (MQ=255)

                cGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTa                                                                           <  1:846765/91‑1 (MQ=255)

                cGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTa                                                                           >  2:2914900/1‑91 (MQ=255)

                 gCTGCATGACACAAACGAAGGTAAAAATTCGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTATATTTATTTCTTAt                                                                          >  1:5185952/1‑91 (MQ=255)

                   tGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTc                                                                        <  1:2821641/91‑1 (MQ=255)

                   tGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTc                                                                        <  1:4262854/91‑1 (MQ=255)

                   tGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTc                                                                        >  1:390720/1‑91 (MQ=255)

                    gCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTcc                                                                       >  1:602957/1‑91 (MQ=255)

                    gCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTATTATTcc                                                                       >  2:5379962/1‑91 (MQ=255)

                       tGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCAt                                                                    >  2:3523986/1‑91 (MQ=255)

                       tGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCAt                                                                    >  2:1281810/1‑91 (MQ=255)

                         aTACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATta                                                                  <  2:1473770/91‑1 (MQ=255)

                         aTACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATta                                                                  <  2:3086874/91‑1 (MQ=255)

                             aaaCGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACa                                                              <  1:4226429/91‑1 (MQ=255)

                             aaaCCAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCTTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACa                                                              <  2:4919749/91‑1 (MQ=255)

                              aaCGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACAt                                                             >  1:2805981/1‑91 (MQ=255)

                              aaCGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACAt                                                             <  1:4060237/91‑1 (MQ=255)

                               aCGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATc                                                            <  1:127598/91‑1 (MQ=255)

                               aCGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATc                                                            <  1:1022379/91‑1 (MQ=255)

                                    ggTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAAttt                                                       >  2:5136627/1‑91 (MQ=255)

                                    ggTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAAttt                                                       >  2:792222/1‑91 (MQ=255)

                                      tAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTaa                                                     >  2:3273543/1‑91 (MQ=255)

                                       aaaaaTTTGACTCCCTTCAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTaaa                                                    >  1:5469896/1‑91 (MQ=255)

                                        aaaaTTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAg                                                   >  2:4057961/1‑91 (MQ=255)

                                        aaaaTTTGACTCCCTTTAGTAGTGGACCCATACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAg                                                   >  1:210571/1‑91 (MQ=255)

                                         aaaTTTGACTTCCTTTAGTAGTGGACCCGTACG‑CTAATCGTGCGGGTCGTTTTTATTTAATTCTTATTCCCATTATACATCAATTTAAAGc                                                  <  1:5164104/91‑1 (MQ=255)

                                           aTTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCAt                                                <  2:871905/91‑1 (MQ=255)

                                           aTTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCAt                                                <  2:1735172/91‑1 (MQ=255)

                                           aTTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCAt                                                <  2:201543/91‑1 (MQ=255)

                                           aTTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCAt                                                <  2:588467/91‑1 (MQ=255)

                                              tGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTaa                                             >  2:1603606/1‑91 (MQ=255)

                                              tGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTaa                                             >  2:541145/1‑91 (MQ=255)

                                                  tCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAAtttt                                         <  2:3460691/91‑1 (MQ=255)

                                                    ccTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAAtttttt                                       <  2:2679897/91‑1 (MQ=255)

                                                     cTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTa                                      <  2:205311/91‑1 (MQ=255)

                                                      tttAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTaa                                     <  1:5000212/91‑1 (MQ=255)

                                                      tttAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTaa                                     <  2:5236402/91‑1 (MQ=255)

                                                       ttAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTaaa                                    <  1:134239/91‑1 (MQ=255)

                                                       ttAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTaaa                                    <  2:497667/91‑1 (MQ=255)

                                                        tagtagTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAAc                                   <  2:2528392/91‑1 (MQ=255)

                                                        tagtagTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAAc                                   <  1:1816606/91‑1 (MQ=255)

                                                         agtagtGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACa                                  >  2:1955083/1‑91 (MQ=255)

                                                           tagtGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACaaa                                >  2:247089/1‑91 (MQ=255)

                                                           tagtGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACaaa                                >  1:1660508/1‑91 (MQ=255)

                                                            agtGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAAt                               <  2:4763453/91‑1 (MQ=255)

                                                             gtGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAAtt                              >  2:1848949/1‑91 (MQ=255)

                                                             gtGGACCCGTACG‑TTAATCGTGCGGGTCGTTTGTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAAtt                              >  1:5099692/1‑91 (MQ=255)

                                                              tGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAAttt                             <  1:3403491/91‑1 (MQ=255)

                                                              tGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAAttt                             >  1:3962577/1‑91 (MQ=255)

                                                              tGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAAttt                             >  1:4434613/1‑91 (MQ=255)

                                                                GACCCGCACGATTAA‑CGTACGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCACTTTAAAGCATTAATTTTTTAAACAAATGTaa                           <  1:5245334‑M1/91‑1 (MQ=255)

                                                                 gacccgcacgattaacgtacgggtcGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTaa                           >  2:5626801‑M2/26‑91 (MQ=255)

                                                                 ACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAg                          >  2:1119439‑M1/1‑91 (MQ=255)

                                                                 ACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAg                          <  2:4139344‑M1/91‑1 (MQ=255)

                                                                 ACCCGTACG‑TTAATCATGCGGGTCGTTTTTATTTATTTCTTATTCGCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAACTTAAg                          >  2:5538448‑M1/1‑91 (MQ=255)

                                                                  CCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGa                         <  2:4505950‑M1/91‑1 (MQ=255)

                                                                  CCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGa                         >  2:4677742‑M1/1‑91 (MQ=255)

                                                                   cccgcacgattaacgtacgggtcGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGa                         >  1:350538‑M2/24‑91 (MQ=255)

                                                                   CCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGaa                        <  2:4320875‑M1/91‑1 (MQ=255)

                                                                    CGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAAt                       >  1:5372343‑M1/1‑91 (MQ=255)

                                                                    CGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAAt                       <  1:464254‑M1/91‑1 (MQ=255)

                                                                     GTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATa                      <  2:3837723‑M1/91‑1 (MQ=255)

                                                                     GTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATa                      >  1:3556098‑M1/1‑91 (MQ=255)

                                                                      tACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATAc                     >  1:2849952/1‑91 (MQ=255)

                                                                      tACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATAc                     <  2:3713379/91‑1 (MQ=255)

                                                                       aCG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACa                    <  2:931240/91‑1 (MQ=255)

                                                                       aCG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACa                    >  1:5043130/1‑91 (MQ=255)

                                                                       aCG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACa                    <  2:1217345/91‑1 (MQ=255)

                                                                       aCG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACa                    >  2:1160416/1‑91 (MQ=255)

                                                                         g‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATa                  <  1:1423434/91‑1 (MQ=255)

                                                                         g‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATa                  <  1:3677785/91‑1 (MQ=255)

                                                                         g‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCACTAATTTTTTAAACAAATTTAAGAATACATa                  >  1:4358665/1‑91 (MQ=255)

                                                                            tAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATatt                <  1:3729405/91‑3 (MQ=255)

                                                                            tAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGt                >  1:1498228/1‑91 (MQ=255)

                                                                             aaTCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTa               >  2:23277/1‑91 (MQ=255)

                                                                              aTCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTaa              <  1:2012224/91‑1 (MQ=255)

                                                                              aTCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTaa              <  2:2745729/91‑1 (MQ=255)

                                                                              aTCGTGCGAGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTaa              <  2:2641035/91‑1 (MQ=255)

                                                                                  tGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAAtata          <  1:3546062/91‑1 (MQ=255)

                                                                                   gCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAATATaa         <  1:2914900/91‑1 (MQ=255)

                                                                                   gCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAATATaa         <  2:5469896/91‑1 (MQ=255)

                                                                                    cgggtcGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAATATAAc        <  2:1909907‑M2/85‑1 (MQ=255)

                                                                                    cgggtcGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAATATAAc        <  1:5311427‑M2/85‑1 (MQ=255)

                                                                                    cgggtcGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAATATAAc        >  1:3056161‑M2/7‑91 (MQ=255)

                                                                                    cgggtcGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAATATAAc        <  2:3684492‑M2/85‑1 (MQ=255)

                                                                                     gggtcGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAATATAACa       >  1:2765496‑M2/6‑91 (MQ=255)

                                                                                       gtcGTTTTTATTTATTTCTTATTCCCGGGGGAGATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAATATAACAAt     <  1:2272895‑M2/88‑1 (MQ=255)

                                                                                          gTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAATATAACAATCTa  <  1:2618032/91‑1 (MQ=255)

                                                                                          gTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAATATAACAATCTa  <  1:4890660/91‑1 (MQ=255)

AAAAGTATGTGTAAAACGCTGCATGATACAAACGAAGGTAAAAATTTGACTCCCTTTAGTAGTGGACCCGTACG‑TTAATCGTGCGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAATATAACAATCTA  >  USA300TCH1516_ALE/854316‑854495

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.