BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2442806 =	216 (0.750)	10 (0.040)	8/128	NT	5.2%	intergenic (+3/+55)	glvR/USA300HOU_RS12585	HTH‑type transcriptional regulator GlvR/hypothetical protein
*	?	USA300TCH1516_ALE	2442855 =	191 (0.830)	10 (0.040)	8/128	NT	5.2%	intergenic (+52/+6)	glvR/USA300HOU_RS12585	HTH‑type transcriptional regulator GlvR/hypothetical protein

Only 100 of 373 total aligned reads displayed.

TATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCT  >  USA300TCH1516_ALE/2442765‑2442945

tataATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTa                                                                                            >  2:1882330/1‑91 (MQ=255)

 ataATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATGACTTCCTTTTAt                                                                                           <  2:2360249/91‑1 (MQ=255)

 ataATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTAt                                                                                           <  2:1804490/91‑1 (MQ=255)

 ataATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTAt                                                                                           >  2:684868/1‑91 (MQ=255)

    aTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAt                                                                                        <  1:3764883/91‑1 (MQ=255)

    aTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAt                                                                                        >  2:3861715/1‑91 (MQ=255)

    aTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAt                                                                                        >  2:5310047/1‑91 (MQ=255)

    aTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAt                                                                                        <  2:2024424/91‑1 (MQ=255)

    aTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACATCCTTTTATCAt                                                                                        >  2:3627106/1‑91 (MQ=255)

        gTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTa                                                                                    >  1:4937652/1‑91 (MQ=255)

        gTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTa                                                                                    >  1:4061998/1‑91 (MQ=255)

        gTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTa                                                                                    <  2:268280/91‑1 (MQ=255)

         tATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAt                                                                                   <  2:4171610/91‑1 (MQ=255)

            ttACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAttgt                                                                                >  1:5267284/1‑91 (MQ=255)

            ttACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAttgt                                                                                <  1:2891587/91‑1 (MQ=255)

            ttACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAttgt                                                                                >  1:1847207/1‑91 (MQ=255)

             tactacATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAttgtt                                                                               >  2:2261916/1‑91 (MQ=255)

              actacATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAttgttg                                                                              >  1:2404283/1‑91 (MQ=255)

              actacATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAttgttg                                                                              >  2:2526385/1‑91 (MQ=255)

                 acATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtgt                                                                           <  1:2665906/91‑1 (MQ=255)

                 acATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtgt                                                                           >  1:9737/1‑91 (MQ=255)

                 acATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtgt                                                                           >  2:3737969/1‑91 (MQ=255)

                   aTAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtgttg                                                                         >  1:4780150/1‑91 (MQ=255)

                     aaTGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGACCCTATCATAACTTCCTTTTATCATTTTATAGTTGTGTTGAt                                                                       >  2:5629818/1‑91 (MQ=255)

                        gATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGtt                                                                    >  1:3861699/1‑91 (MQ=255)

                        gATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGtt                                                                    <  2:4236040/91‑1 (MQ=255)

                         atatTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGttt                                                                   <  1:4006192/91‑1 (MQ=255)

                         atatTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGttt                                                                   >  1:2117213/1‑91 (MQ=255)

                          tatTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTc                                                                  >  1:1604921/1‑91 (MQ=255)

                           atTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCg                                                                 >  1:1333774/1‑91 (MQ=255)

                           atTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCg                                                                 >  2:431754/1‑91 (MQ=255)

                            tttCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGa                                                                <  2:925448/91‑1 (MQ=255)

                            tttCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGa                                                                <  2:1397032/91‑1 (MQ=255)

                            tttCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGa                                                                <  1:2246798/91‑1 (MQ=255)

                             ttCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGAt                                                               <  1:68581/91‑1 (MQ=255)

                             ttCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGAt                                                               <  2:2996073/91‑1 (MQ=255)

                              tCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATa                                                              <  1:201762/91‑1 (MQ=255)

                              tCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATa                                                              <  1:585770/91‑1 (MQ=255)

                                aaaTTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAAc                                                            >  2:947165/1‑91 (MQ=255)

                                 aaTTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGAGTTGATGTTTCTATAACg                                                           >  1:4721978/1‑91 (MQ=255)

                                  aTTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGt                                                          <  1:4628310/91‑1 (MQ=255)

                                    tAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTgg                                                        <  1:4538160/91‑1 (MQ=255)

                                     aGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGt                                                       >  2:4672369/1‑91 (MQ=255)

                                     aGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGt                                                       >  2:2652803/1‑91 (MQ=255)

                                     aGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGt                                                       >  1:2963378/1‑91 (MQ=255)

                                       aaaaaaGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTAc                                                     <  1:2540086/91‑1 (MQ=255)

                                         AAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACAt                                                   <  1:2475338‑M1/91‑1 (MQ=255)

                                         AAAAGGAAGTGATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACAt                                                   >  2:4500109‑M1/1‑91 (MQ=255)

                                           AAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCt                                                 <  2:5428927‑M1/91‑1 (MQ=255)

                                            AGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCtt                                                >  1:4966727‑M1/1‑91 (MQ=255)

                                            AGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCtt                                                >  2:1116370‑M1/1‑91 (MQ=255)

                                              GAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTAt                                              <  2:4035252‑M1/91‑1 (MQ=255)

                                                AGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCa                                            <  1:4848682‑M1/91‑1 (MQ=255)

                                                AGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCa                                            <  1:1101781‑M1/91‑1 (MQ=255)

                                                AGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCa                                            <  1:2581605‑M1/91‑1 (MQ=255)

                                                AGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCa                                            <  2:3039048‑M1/91‑1 (MQ=255)

                                                AGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCa                                            <  1:3419646‑M1/91‑1 (MQ=255)

                                                  TTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCaaa                                          >  1:2313849‑M1/1‑91 (MQ=255)

                                                  TTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCaaa                                          <  1:1454455‑M1/91‑1 (MQ=255)

                                                   TATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAAc                                         >  2:185622‑M1/1‑91 (MQ=255)

                                                   TATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAAc                                         <  2:2583211‑M1/91‑1 (MQ=255)

                                                    ATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACa                                        >  2:5273435‑M1/1‑91 (MQ=255)

                                                    ATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACa                                        >  2:4923846‑M1/1‑91 (MQ=255)

                                                    ATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACa                                        <  1:4153922‑M1/91‑1 (MQ=255)

                                                      tATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATc                                      >  2:2127222‑M1/2‑91 (MQ=255)

                                                      GATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATc                                      >  2:3822038‑M1/1‑91 (MQ=255)

                                                      GATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATc                                      >  2:4853320‑M1/1‑91 (MQ=255)

                                                      GATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATc                                      >  1:118508‑M1/1‑91 (MQ=255)

                                                      GATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATc                                      >  2:1655222‑M1/1‑91 (MQ=255)

                                                      GATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTACCAAACATc                                      >  2:4469768‑M1/1‑91 (MQ=255)

                                                       ATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCa                                     <  2:1954175‑M1/91‑1 (MQ=255)

                                                        taggctcaaggccattaaatcataacttcctattATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCaa                                    >  1:5511280‑M2/35‑91 (MQ=255)

                                                         ttAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAAt                                   <  1:1494057/91‑1 (MQ=255)

                                                            aTGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCg                                <  1:3327671/91‑1 (MQ=255)

                                                             tcaaggccattaaatcataacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCACACATCAATTCGa                               >  2:3593976‑M2/30‑91 (MQ=255)

                                                             tGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGa                               <  2:3268066/91‑1 (MQ=255)

                                                                 cTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAAcc                           >  2:110401/1‑91 (MQ=255)

                                                                       ccTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCAc                     <  2:3232810/91‑1 (MQ=255)

                                                                        cTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCAcc                    <  1:3227606/91‑1 (MQ=255)

                                                                         tATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCa                   <  2:3999324/91‑1 (MQ=255)

                                                                         tATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCa                   >  1:1959104/1‑91 (MQ=255)

                                                                           tcataacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATg                 >  1:2857387‑M2/16‑91 (MQ=255)

                                                                             ataacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGc               >  1:3110627‑M2/14‑91 (MQ=255)

                                                                                acttccttttATCATTTTCTTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGcatc            >  2:1281774‑M2/11‑91 (MQ=255)

                                                                                acttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGcatc            <  1:1392243‑M2/81‑1 (MQ=255)

                                                                                acttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGcatc            >  1:3616797‑M2/11‑91 (MQ=255)

                                                                                 cttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGcatca           >  1:369007‑M2/10‑91 (MQ=255)

                                                                                  ttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGcatcat          <  1:5358166‑M2/83‑1 (MQ=255)

                                                                                  ttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGcatcat          >  1:906948‑M2/9‑91 (MQ=255)

                                                                                  ttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGcatcat          <  2:1934777‑M2/83‑1 (MQ=255)

                                                                                   tccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATg         >  2:772838‑M2/8‑91 (MQ=255)

                                                                                    ccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGa        >  1:4209777‑M2/7‑91 (MQ=255)

                                                                                    ccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGa        <  2:4776248‑M2/85‑1 (MQ=255)

                                                                                    ccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGa        >  1:4373976‑M2/7‑91 (MQ=255)

                                                                                      ttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGata      <  2:4550456‑M2/87‑1 (MQ=255)

                                                                                      ttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGata      >  2:4116633‑M2/5‑91 (MQ=255)

                                                                                       tttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGatat     <  2:5076457‑M2/88‑1 (MQ=255)

                                                                                         tATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTc   <  2:2875038‑M2/90‑1 (MQ=255)

                                                                                         tATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTc   <  2:1454455‑M2/90‑1 (MQ=255)

                                                                                          aTCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATAttct  <  2:4407492/91‑1 (MQ=255)

TATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCT  >  USA300TCH1516_ALE/2442765‑2442945

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.