BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2442821	232 (0.810)	10 (0.040)	8/128	NT	5.1%	intergenic (+18/+40)	glvR/USA300HOU_RS12585	HTH‑type transcriptional regulator GlvR/hypothetical protein
*	?	USA300TCH1516_ALE	= 2442838	191 (0.830)	10 (0.040)	8/128	NT	5.1%	intergenic (+35/+23)	glvR/USA300HOU_RS12585	HTH‑type transcriptional regulator GlvR/hypothetical protein

Only 100 of 392 total aligned reads displayed.

AAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCA  >  USA300TCH1516_ALE/2442748‑2442928

 aaCACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTa                                                                                           <  1:5273435‑M2/91‑2 (MQ=255)

 aaCACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTa                                                                                           <  1:2526668‑M2/91‑2 (MQ=255)

  acacTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTat                                                                                          <  2:1866922‑M2/91‑3 (MQ=255)

  acacTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTat                                                                                          <  1:1369703‑M2/91‑3 (MQ=255)

   cacTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatc                                                                                         >  1:3719896‑M2/1‑88 (MQ=255)

     cTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcat                                                                                       >  2:854034‑M2/1‑86 (MQ=255)

     cTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcat                                                                                       <  2:115787‑M2/91‑6 (MQ=255)

     cTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcat                                                                                       <  1:4037694‑M2/91‑6 (MQ=255)

     cTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcat                                                                                       <  1:2397005‑M2/91‑6 (MQ=255)

        gTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataac                                                                                    >  1:4802405‑M2/1‑83 (MQ=255)

         tAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataact                                                                                   >  1:2906138‑M2/1‑82 (MQ=255)

             aaaaTATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttcct                                                                               >  2:3005087‑M2/1‑78 (MQ=255)

             aaaaTATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttcct                                                                               <  2:4704320‑M2/91‑14 (MQ=255)

              aaaTATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttcctt                                                                              <  1:722027‑M2/91‑15 (MQ=255)

              aaaTATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttcctt                                                                              >  1:2322070‑M2/1‑77 (MQ=255)

               aaTATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttccttt                                                                             >  2:3086703‑M2/1‑76 (MQ=255)

               aaTATAATGAGTATTTACTACATAATGATATATCAAATTAGAAAAAAGGACGTTATGATTTAATGGCCTTGAGCCTatcataacttccttt                                                                             <  2:2468673‑M2/91‑16 (MQ=255)

                atatAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttcctttt                                                                            >  2:5267535‑M2/1‑75 (MQ=255)

                 tataATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTa                                                                           >  1:2566890/1‑91 (MQ=255)

                  ataATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTAt                                                                          >  2:3999985/1‑91 (MQ=255)

                  ataATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTAt                                                                          >  2:684868/1‑91 (MQ=255)

                  ataATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTAt                                                                          <  2:1804490/91‑1 (MQ=255)

                  ataATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTAt                                                                          >  1:3237768/1‑91 (MQ=255)

                    aaTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCa                                                                        >  2:3773965/1‑91 (MQ=255)

                     aTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAt                                                                       >  2:5310047/1‑91 (MQ=255)

                     aTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAt                                                                       <  2:2024424/91‑1 (MQ=255)

                     aTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAt                                                                       <  1:4003001/91‑1 (MQ=255)

                     aTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAt                                                                       <  2:4499261/91‑1 (MQ=255)

                     aTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAt                                                                       <  1:3439530/91‑1 (MQ=255)

                     aTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAt                                                                       <  1:3764883/91‑1 (MQ=255)

                     aTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAt                                                                       <  1:3020591/91‑1 (MQ=255)

                     aTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAt                                                                       >  2:3863766/1‑91 (MQ=255)

                        aGTATTTACTACATAATGATAAATAAAAATAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAtttt                                                                    <  2:1021221/91‑1 (MQ=255)

                         gTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTa                                                                   <  2:268280/91‑1 (MQ=255)

                         gTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTa                                                                   <  1:1879534/91‑1 (MQ=255)

                         gTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTa                                                                   <  1:1483465/91‑1 (MQ=255)

                          tATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAt                                                                  <  2:4171610/91‑1 (MQ=255)

                          tATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAt                                                                  <  2:1646204/91‑1 (MQ=255)

                           aTTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAtt                                                                 <  2:3623598/91‑1 (MQ=255)

                            tttACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAttg                                                                >  1:2446578/1‑91 (MQ=255)

                            tttACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAttg                                                                <  1:2277436/91‑1 (MQ=255)

                             ttACTATATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGTCTATCATAACTTCCTTTTATCATTTTAttgt                                                               <  2:4051642/91‑1 (MQ=255)

                             ttACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAttgt                                                               <  1:2850340/91‑1 (MQ=255)

                             ttACTACATAATGATATTAAAAAATAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAttgt                                                               <  2:2554454/91‑1 (MQ=255)

                              tactacATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAttgtt                                                              >  2:2261916/1‑91 (MQ=255)

                                ctacATAATGATATTTTAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCATGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgt                                                            >  1:5471453/1‑91 (MQ=255)

                                 tacATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtg                                                           <  1:429015/91‑1 (MQ=255)

                                 tacATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtg                                                           <  2:1913907/91‑1 (MQ=255)

                                  acATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtgt                                                          >  2:288448/1‑91 (MQ=255)

                                    aTAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtgttg                                                        <  1:4746513/91‑1 (MQ=255)

                                         gATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGtt                                                   <  2:4236040/91‑1 (MQ=255)

                                         gATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGtt                                                   >  1:3861699/1‑91 (MQ=255)

                                          atatTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGttt                                                  <  1:1192127/91‑1 (MQ=255)

                                          atatTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGttt                                                  >  1:1633427/1‑91 (MQ=255)

                                           tatTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTc                                                 <  1:496604/91‑1 (MQ=255)

                                            atTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCg                                                >  1:1333774/1‑91 (MQ=255)

                                            atTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCg                                                <  1:5559046/91‑1 (MQ=255)

                                               tCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATa                                             >  1:2677541/1‑91 (MQ=255)

                                               tCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATa                                             <  1:201762/91‑1 (MQ=255)

                                                cAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGTTGTTTCGATaa                                            >  2:5647440/1‑91 (MQ=255)

                                                 aaaTTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAAc                                           <  2:1411653/91‑1 (MQ=255)

                                                 aaaTTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAAc                                           >  1:2157875/1‑91 (MQ=255)

                                                 aaaTTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAAc                                           <  2:3397271/91‑1 (MQ=255)

                                                 aaaTTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAAc                                           <  2:2633483/91‑1 (MQ=255)

                                                 aaaTTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAAc                                           >  2:947165/1‑91 (MQ=255)

                                                  aaTTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACg                                          >  2:5115811/1‑91 (MQ=255)

                                                  aaTTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACg                                          <  2:3712668/91‑1 (MQ=255)

                                                     tAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTGTTGTTGTGTTGATGTTTCGATAACGTgg                                       <  2:5409124/91‑1 (MQ=255)

                                                     tAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTgg                                       <  1:862571/91‑1 (MQ=255)

                                                      aGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGt                                      >  2:4672369/1‑91 (MQ=255)

                                                      aGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGt                                      <  1:4546855/91‑1 (MQ=255)

                                                      aGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGt                                      <  1:3136004/91‑1 (MQ=255)

                                                       gAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCAATAACGTGGTa                                     <  2:2322934/91‑1 (MQ=255)

                                                        aaaaaaGTAAGTTATCATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTAc                                    <  2:4346269/91‑1 (MQ=255)

                                                        aaaaaaGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTAc                                    >  2:5514789/1‑91 (MQ=255)

                                                            aaGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattt                                <  1:4906449‑M2/91‑61 (MQ=255)

                                                            AAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCt                                <  2:928648‑M1/91‑1 (MQ=255)

                                                             AGGAAGTTATGATTTAATTGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCtt                               >  2:1115860‑M1/1‑91 (MQ=255)

                                                              GGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTa                              >  2:3149238‑M1/1‑91 (MQ=255)

                                                                 AGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCa                           <  1:1101781‑M1/91‑1 (MQ=255)

                                                                 AGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCa                           <  1:4848682‑M1/91‑1 (MQ=255)

                                                                  GTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCaa                          >  1:2610468‑M1/1‑91 (MQ=255)

                                                                   ttATGATTTAATGGCCTTGAGCCTatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttaca                         <  1:947039‑M2/91‑68 (MQ=255)

                                                                     ATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACa                       <  1:4153922‑M1/91‑1 (MQ=255)

                                                                     ATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACa                       >  1:588534‑M1/1‑91 (MQ=255)

                                                                       GATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATc                     >  2:3845273‑M1/1‑91 (MQ=255)

                                                                       GATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATc                     >  2:4853320‑M1/1‑91 (MQ=255)

                                                                       GATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATc                     >  2:2145150‑M1/1‑91 (MQ=255)

                                                                        ATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCa                    <  2:1954175‑M1/91‑1 (MQ=255)

                                                                          ttAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAAt                  <  2:4924581/91‑1 (MQ=255)

                                                                           tAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAAtt                 <  2:4549992/91‑1 (MQ=255)

                                                                                gCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGaaa            >  1:4643605/1‑91 (MQ=255)

                                                                                gCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGaaa            >  1:3381439/1‑91 (MQ=255)

                                                                                  cTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAAcc          <  2:1847207/91‑1 (MQ=255)

                                                                                  cTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAAcc          >  1:5297917/1‑91 (MQ=255)

                                                                                    tGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCAt        <  1:1538869/91‑1 (MQ=255)

                                                                                     gAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATg       >  2:4429921/1‑91 (MQ=255)

                                                                                     gAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTCCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATg       >  1:143236/1‑91 (MQ=255)

                                                                                         cTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCAcc   <  1:5228651/91‑1 (MQ=255)

                                                                                          tATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCa  >  1:1959104/1‑91 (MQ=255)

AAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCA  >  USA300TCH1516_ALE/2442748‑2442928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.