Predicted mutation
evidence seq id position mutation annotation gene description
JC CP000731 6,552 +TCTCCAGGCACTTGTGCATATTCTGAAA intergenic (+1069/‑419) cadX → / → USA300HOU_pUSA300HOUMR0010 cadmium efflux regulator/MarR family transcriptional regulator

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000731 = 65520 (0.000)781 (0.900)
+TCTCCAGGCACTTGTGCATATTCTGAAA
120/124 0.1 100% intergenic (+1069/‑419) cadX/USA300HOU_pUSA300HOUMR0010 cadmium efflux regulator/MarR family transcriptional regulator
?CP000731 6553 = 0 (0.000)intergenic (+1070/‑418) cadX/USA300HOU_pUSA300HOUMR0010 cadmium efflux regulator/MarR family transcriptional regulator

Only 100 of 1179 total aligned reads displayed.

TTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAA  >  CP000731/6462‑6642
                                                                                          |                                                                                          
  cAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtc                                                                                          <  2:818330‑M1/91‑3 (MQ=255)
  cAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtc                                                                                          >  1:1667268‑M1/1‑89 (MQ=255)
   aaaaaTTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGTGGAATAGGAACAATCCACtct                                                                                         >  2:5589732‑M1/1‑88 (MQ=255)
    aaaaTTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctc                                                                                        >  2:542812‑M1/1‑87 (MQ=255)
      aaTTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctcca                                                                                      >  2:1994442‑M1/1‑85 (MQ=255)
      aaTTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctcca                                                                                      <  1:4344671‑M1/91‑7 (MQ=255)
      aaTTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACAGTTCTTGGGGAATAGGAACAATCCACtctcca                                                                                      <  2:688097‑M1/91‑7 (MQ=255)
       aTTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccag                                                                                     <  2:2319840‑M1/91‑8 (MQ=255)
        ttGATAATGCTGGCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccagg                                                                                    <  2:3737062‑M1/91‑9 (MQ=255)
        ttGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccagg                                                                                    <  1:4207580‑M1/91‑9 (MQ=255)
        ttGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccagg                                                                                    <  1:4663696‑M1/91‑9 (MQ=255)
        ttGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccagg                                                                                    <  2:5668719‑M1/91‑9 (MQ=255)
        ttGATAACGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccagg                                                                                    <  2:2140335‑M1/91‑9 (MQ=255)
         tGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggc                                                                                   >  1:3652656‑M1/1‑82 (MQ=255)
         tGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggc                                                                                   >  2:2429479‑M1/1‑82 (MQ=255)
         tGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggc                                                                                   >  2:915184‑M1/1‑82 (MQ=255)
          gATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggca                                                                                  <  1:1542766‑M1/91‑11 (MQ=255)
           aTAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcac                                                                                 >  2:1400928‑M1/1‑80 (MQ=255)
           aTAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcac                                                                                 >  1:396605‑M1/1‑80 (MQ=255)
            tAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcact                                                                                >  1:1010547‑M1/1‑79 (MQ=255)
            tAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcact                                                                                >  1:3569524‑M1/1‑79 (MQ=255)
            tAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcact                                                                                >  2:4417920‑M1/1‑79 (MQ=255)
             aaTGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATATACATTTCTTGGGGAATAGGAACAATCCACtctccaggcactt                                                                               >  1:5663931‑M1/1‑78 (MQ=255)
             aaTGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtcgccaggcactt                                                                               >  2:4621261‑M1/1‑78 (MQ=255)
              aTGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACGCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttg                                                                              <  2:5107010‑M1/91‑15 (MQ=255)
               tgctgcCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgt                                                                             <  1:2573167‑M1/91‑16 (MQ=255)
                 ctgcCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgc                                                                           <  2:2928722‑M1/91‑18 (MQ=255)
                 ctgcCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgc                                                                           <  1:1971495‑M1/91‑18 (MQ=255)
                  tgcCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgca                                                                          <  2:1767155‑M1/91‑19 (MQ=255)
                  tgcCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgca                                                                          <  1:1067052‑M1/91‑19 (MQ=255)
                   gcCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcat                                                                         <  1:1908015‑M1/91‑20 (MQ=255)
                    ccGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcata                                                                        <  1:2060809‑M1/91‑21 (MQ=255)
                    ccGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcata                                                                        >  2:1894710‑M1/1‑71 (MQ=255)
                    ccGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcata                                                                        <  1:524685‑M1/91‑21 (MQ=255)
                      gTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatatt                                                                      >  2:450267‑M1/1‑69 (MQ=255)
                         aaaCCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctg                                                                   >  2:4205845‑M1/1‑66 (MQ=255)
                           aCCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaa                                                                 <  1:3877594‑M1/91‑28 (MQ=255)
                           aCCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaa                                                                 >  2:4148743‑M1/1‑64 (MQ=255)
                            ccGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaa                                                                >  2:5502164‑M1/1‑63 (MQ=255)
                             cGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaa                                                               >  1:2738704‑M1/1‑62 (MQ=255)
                              ggCTGTGCCATATACCATAGACTCTTTAATAGGCATTTATTGGGGAATAGGAAGAATCCACgctccaggcacttgtgcatattctgaaaat                                                              <  2:4739133‑M1/91‑31 (MQ=255)
                              ggCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaat                                                              <  1:5545349‑M1/91‑31 (MQ=255)
                               gCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatc                                                             <  1:3516243‑M1/91‑32 (MQ=255)
                                cTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGTATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatcc                                                            >  1:4541999‑M1/1‑59 (MQ=255)
                                 tgtgCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatcca                                                           <  2:3835005‑M1/91‑34 (MQ=255)
                                     ccATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctg                                                       >  1:863215‑M1/1‑54 (MQ=255)
                                        tataCCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtat                                                    <  2:5767164‑M1/91‑41 (MQ=255)
                                         ataCCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatg                                                   <  2:4312793‑M1/91‑42 (MQ=255)
                                         ataCCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatg                                                   <  1:2947020‑M1/91‑42 (MQ=255)
                                            ccATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgt                                                <  2:5289364‑M1/91‑45 (MQ=255)
                                              aTAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtca                                              >  2:3036175‑M1/1‑45 (MQ=255)
                                               tAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcac                                             >  1:3750583‑M1/1‑44 (MQ=255)
                                               tAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcac                                             <  1:1352760‑M1/91‑48 (MQ=255)
                                                 gACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgc                                           >  2:5000150‑M1/1‑42 (MQ=255)
                                                  aCTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgcc                                          >  1:4915616‑M1/1‑41 (MQ=255)
                                                   ctctTTAATAGACATTTCTTGGAGAATACGAACACTCCAGtctccaggcacttgtgcatattctgaacatacacctgtatgtgtcacgcca                                         <  2:3652656‑M1/91‑52 (MQ=255)
                                                    tctTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaa                                        >  2:2544567‑M1/1‑39 (MQ=255)
                                                     ctTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaac                                       >  2:1602108‑M1/1‑38 (MQ=255)
                                                     ctTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccac                                                          >  1:5029210‑M1/1‑38 (MQ=255)
                                                     ctTTAATAGACATTGCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaac                                       <  2:1220055‑M1/91‑54 (MQ=255)
                                                      tttAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaaca                                      >  1:5762586‑M1/1‑37 (MQ=255)
                                                      tttAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaaca                                      >  1:4072158‑M1/1‑37 (MQ=255)
                                                       ttAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacat                                     >  2:4888874‑M1/1‑36 (MQ=255)
                                                         aaTAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatca                                   <  1:1803547‑M1/91‑58 (MQ=255)
                                                          aTAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcat                                  >  2:5181881‑M1/1‑33 (MQ=255)
                                                           tAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcata                                 <  2:3978019‑M1/91‑60 (MQ=255)
                                                             gACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataac                               >  1:607209‑M1/1‑30 (MQ=255)
                                                              aCATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataacc                              <  2:2857579‑M1/91‑63 (MQ=255)
                                                               cATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataacca                             >  1:3357871‑M1/1‑28 (MQ=255)
                                                                 tttCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagt                           >  1:5461234‑M1/1‑26 (MQ=255)
                                                                  ttCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagta                          >  1:3220221‑M1/1‑25 (MQ=255)
                                                                     ttGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaact                       >  2:1138505‑M1/1‑22 (MQ=255)
                                                                       ggggAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaa                     >  2:322053‑M1/1‑20 (MQ=255)
                                                                       ggggAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaa                     >  2:3528336‑M1/1‑20 (MQ=255)
                                                                       ggggAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaa                     <  2:1056010‑M1/91‑72 (MQ=255)
                                                                       ggggAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataacca                             <  1:2166643‑M1/83‑64 (MQ=255)
                                                                         ggAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaata                   >  2:3429464‑M1/1‑18 (MQ=255)
                                                                          gAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatac                  >  1:728905‑M1/1‑17 (MQ=255)
                                                                          gAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatac                  >  2:2230200‑M1/1‑17 (MQ=255)
                                                                          gAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatac                  >  1:2869686‑M1/1‑17 (MQ=255)
                                                                            aTAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacat                >  1:2371680‑M1/1‑15 (MQ=255)
                                                                            aTAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacat                <  1:2265226‑M1/91‑77 (MQ=255)
                                                                               ggAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattat             <  2:2698301‑M1/91‑80 (MQ=255)
                                                                               ggAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattat             >  1:309970‑M1/1‑12 (MQ=255)
                                                                                 aaCAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcg           >  2:3913962‑M1/1‑10 (MQ=255)
                                                                                 aaCAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcg           <  2:3123703‑M1/91‑82 (MQ=255)
                                                                                  aCAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgc          >  2:1538422‑M1/1‑9 (MQ=255)
                                                                                   cAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgcc         <  1:1305753‑M1/91‑84 (MQ=255)
                                                                                   cAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgcc         <  1:2683471‑M1/91‑84 (MQ=255)
                                                                                    aaTCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgcct        >  2:4058560‑M1/1‑7 (MQ=255)
                                                                                    aaTCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgcct        >  1:5357217‑M1/1‑7 (MQ=255)
                                                                                      tCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttc      >  1:4847659‑M1/1‑5 (MQ=255)
                                                                                       ccACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttct     >  1:637763‑M1/1‑4 (MQ=255)
                                                                                       ccACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttct     >  1:5156706‑M1/1‑4 (MQ=255)
                                                                                        cACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctt    <  1:143466‑M1/91‑89 (MQ=255)
                                                                                         aCtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttcttt   >  1:1220323‑M1/1‑2 (MQ=255)
                                                                                         aCtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttcttt   >  1:959705‑M1/1‑2 (MQ=255)
                                                                                         aCtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttcttt   >  1:2482032‑M1/1‑2 (MQ=255)
                                                                                         aCtctccaggcacttgtgcatattctgaaaatccaccggtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttcttt   >  1:4448475‑M1/1‑2 (MQ=255)
                                                                                          ctctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttcttta  >  2:3325755‑M1/1‑1 (MQ=255)
                                                                                          |                                                                                          
TTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAA  >  CP000731/6462‑6642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.