mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012417 | = 2674 | 2095 (1.170) | 4 (0.000) | 4/248 | NT | 0.18% | coding (1/582 nt) | USA300HOU_RS14900 | hypothetical protein |
| ? | NC_012417 | = 2748 | 2458 (1.430) | intergenic (‑74/–) | USA300HOU_RS14900/– | hypothetical protein/– | |||||
| * | ? | NC_012417 | = 1974 | 1703 (0.950) | 12 (0.010) | 8/238 | NT | 0.76% | intergenic (+207/+119) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein |
| ? | NC_012417 | = 2041 | 1589 (0.970) | intergenic (+274/+52) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_012417 | 1964 = | 1703 (0.950) | 11 (0.010) | 5/238 | NT | 0.69% | intergenic (+197/+129) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein |
| ? | NC_012417 | 2053 = | 1589 (0.970) | intergenic (+286/+40) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_012417 | = 1057 | 1227 (0.680) | 6 (0.000) | 4/216 | NT | 0.53% | coding (138/192 nt) | USA300HOU_RS15665 | hypothetical protein |
| ? | NC_012417 | = 1103 | 1218 (0.820) | coding (92/192 nt) | USA300HOU_RS15665 | hypothetical protein | |||||
| * | ? | NC_012417 | 987 = | 1296 (0.720) | 4 (0.000) | 4/238 | NT | 0.37% | pseudogene (708/709 nt) | USA300HOU_RS14890 | replication protein |
| ? | NC_012417 | 1013 = | 944 (0.570) | coding (182/192 nt) | USA300HOU_RS15665 | hypothetical protein | |||||
| * | ? | NC_012417 | 1 = | 0 (0.000) | 4 (0.000) +ATAAAAAGAC |
3/240 | NT | 1.1% | intergenic (–/‑279) | –/USA300HOU_RS14890 | –/replication protein |
| ? | NC_012417 | 3071 = | 775 (0.430) | intergenic (‑397/–) | USA300HOU_RS14900/– | hypothetical protein/– | |||||