Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2176703–2181123	2181123	1–4421	12 [8]	[8] 11	ilvA/USA300TCH1516_02069	L‑threonine dehydratase biosynthetic IlvA/tRNA‑Gly

GTCACCAGACATATGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTCATCATCTTTGAGG  >  USA300TCH1516_ALE/2176554‑2176723                                                                                                                                                     |                      gTCACCAGACATATGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGCACCTa                       >  3:68562/1‑149 (MQ=17) gTCACCAGACATATGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGCACCTa                       >  4:299286/1‑149 (MQ=17) gTCACCAGACATATGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTa                       <  4:290747/149‑1 (MQ=32) gTCACCAGACATATGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGCCAGCTCCACACGTCACCACGCTTCCACCGCGAACCTa                       >  4:252601/1‑149 (MQ=255)  tCACCAGNCATATGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACAGGTCACCATGCTTCCACCTCGAACCTAt                      <  4:232213/149‑1 (MQ=17)  tCACCAGNCAGATGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTCAGTCTTCGATCGATTAGTATTCGTCCGCTCCACATGTCACCATGCTTCCACCTCGAACCTAt                      <  4:232210/149‑1 (MQ=12)   cACCAGACATATGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTAtt                     >  4:282456/1‑149 (MQ=32)     ccAGACATATGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTACGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTaa                   >  3:156469/1‑149 (MQ=17)        gACATATGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCt                <  4:206397/149‑1 (MQ=32)              tGAATTTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATTCTTCCACCTCGAACCTATTAACCTcatcat          <  1:24701/149‑1 (MQ=17)              tGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTcatcat          <  1:24697/149‑1 (MQ=32)                      aaTTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTCATCATCTTTGAgg  <  4:156436/149‑1 (MQ=31)                                                                                                                                                     |                      GTCACCAGACATATGAATGTAAATTATACATTCAAAACTAGATAGTAAGTAAAAGTGATTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTCATCATCTTTGAGG  >  USA300TCH1516_ALE/2176554‑2176723

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑