Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | USA300TCH1516_ALE | 2,186,228 | T→C | 34.9% | T129T (ACA→ACG) | rsbW ← | Serine‑protein kinase RsbW |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | USA300TCH1516_ALE | 2,186,228 | 0 | T | C | 34.9% | 18.5 / 19.3 | 26 | T129T (ACA→ACG) | rsbW | Serine‑protein kinase RsbW |
Reads supporting (aligned to +/- strand): ref base T (12/5); new base C (6/3); total (18/8) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.93e-01 |
TGGTGTTCTTTAATCCATTGGTTAATTTGCTCAGGTGAAATTTCATTAGCTGATTTCGACTCTTTCGCCATTATTTCGCACCTG‑CTCTTTTTTTATATACTTAGTCATACTGATTGTCACACCAGATTCTTTATATACTGTGACTTCATCCATTAAAGATTCGATTAAAAATAAACCTAGGCCACCTTCGCGTAAAAAGTCTATATTTTCGTCTTTATCGTAAGGACCTATTTTTGATTTAGTTGTTTCATAATCAAAACTGTCACCTTTAT > USA300TCH1516_ALE/2186090‑2186361 | gggTGTTCTTTAATCCATAGGTTAATTTGCTCAGGTGAAATTTCATTAGCTGATTTCGACTCTTTCGCCATTATTTCGCACCTG‑CTCTTTTTTTCTATACTTATGCATACTGCACGCAAGCCCACATTCGTTATATACtgt > 2:5227/2‑141 (MQ=255) aTCCATTGGTTAATTTGCTCAGGTGAAATTTCATTAGCTGATTTCGACTCTTTCGCCATTATTTCGCACCTG‑CTCTTTTTTTATATACTTAGTCATACTGATTGTCACACCAGATTCTTTATATACTGTGACTTCATCCAt < 1:380106/141‑1 (MQ=255) aTTTGCTCAGGTGAAATTTCATTAGCTGATTTCGACTCTTTCGCCATTATTTCGCACCTG‑CTCTTTTTTTATATACTTAGTCATACTGATTGTCACACCAGATTCTTTATATACTGTGACTTCATCCATTAAAGATTCgtt > 1:1410/1‑139 (MQ=255) aTTTGCTCAGGTGAAATTTCATTAGCTGATTTCGACTCTTTCGCCATTATTTCGCACCTG‑CTCTTTTTTTATATACTTAGTCATACTGATTGTCACACCAGATTCTTTATATACTGTGACTTCATCCATTAAAGATTCGAt > 1:160491/1‑141 (MQ=255) cTCAGGTGAAATTTCATTAGCTGATTTCGACTCTTTCGCCATTATTTCGCACCTG‑CTCTTTTTTTATATACTTAGTCATACTGATTGTCACACCAGATTCTTTATATACCGTGACTTCATCCATTAAAGATTCGATTaaaa > 1:262299/1‑141 (MQ=255) aTTTCATTAGCTGATTTCGACTCTTTCGCCATTATTTCGCACCTG‑CTCTTTTTTTATATACTTAGTCATACTGCTTGCCTCACCATAGTCTTTATATACTGTGACTTCATCCATTAAAGATTCGATTAAAAATAAACCTAg > 1:188555/1‑141 (MQ=255) ttcttAGCTGATTTCGACTCTTTCGCCATTATTTCGCACCTG‑CTCTTTTTTTATATACTTAGTCATACTGATTGTCACTCCAGATTCTTTATATACCGTGACTTCATCCATTAAAGATTCGATTAAAAATAAACCTAGGcc < 2:208376/138‑1 (MQ=255) cATTAGCTGATTTCGACTCTTTCGCCATTATTTCGCACCTG‑CTCTTTTTTTATATACTTAGTCATACTGATTGTCACACCAGATTCTTTATATACTGTGACTTCATCCATTAAAGATTCGCTTAAAAATAAACCTAGGCCa > 1:46692/1‑141 (MQ=255) gATTTCGACTCTTTCGCCATTATTTCGCACCTG‑CTCTTTTTTTATATACTTAGTCATACTGATTGTCACACCAGATTCTTTATATACTGTGACTTCATCCATTAAAGATTCGATTAAAAATAAACCTAGGCCACCTTcgcg < 2:224372/141‑1 (MQ=255) ctctTTCGCCATTATTTCG‑ACTGGTCTCTTTTTTTATATACTTAGTCATACTGATTGTCACACCAGATTCTTTATATACCGTGACTTCATCCATTAAAGATTCGATTAAAAATAAACCTAGGCCACCTTCGCGTAAAAAGt > 1:392862/1‑141 (MQ=255) tattTCGCCCCTG‑CTCTTTTTTTATATACTTAGTCATACTGATTGTCACACCAGATTCTTTATATACTGTGACTTCATCCATTAAAGATTCGATTAAAAATAAACCTAGGCCACCTTCGCGTAAAAAGTCTATATTTTCGt < 1:313100/141‑1 (MQ=255) tttCGCACCTG‑CTCTTATTTTATATACTTAGTCATACTGATTGTCACACCAGATTCTTTATATACTGTGACTTCATCCATTAAAGATTCGATTAAAAATAAACCTAGGCCACCTTCGCGTAAAAAGTCTATATTTTCGTCt > 1:234584/1‑141 (MQ=255) ctTTTTTTATATACTTAGTCATACTGATTGTCACACCAGATTCTTTATATACTGTGACTTCATCCATTAAAGATTCGATTAAAAATAAACCTAGGCCACCTTCGCGTAAAAAGTCTATATTTTCGTCTTTATCGTTAGGAc > 1:261565/1‑141 (MQ=255) tttttATATACTTAATCATACTGATTATCACACCAGATTCTTTATACACTGTGACTTCATCCATTAAAGATTCGATTAAAAATAAACCTAGGCCACCTTCGCGTAAAAAGTCTATATTTTCGTCTTTATCGTAAGGACCTa < 2:233225/141‑1 (MQ=255) ttATATACTTAGTCATACTGATTATCACACCAGATTCTTTATGTACCGTGACTTCATCCATTAAAGATTCGATTAAAAATAAACCTAGGCCCCCTTCGCCTCAAAACGCTATATTTTCGTCATTATCATTAGGACCTActt > 2:225503/1‑141 (MQ=255) tataCTTAATCATACTGCTTGTGTCACCTTAGTCTTTATATACTGTGACTTCATCCATTAAAGATTCGATTAAAAATAAACCTAGGCCACCTTCGCGTAAAAAGTCTATATTTTCGTCTTTATCGTAAGGACCTATTTTTg > 1:192016/1‑141 (MQ=255) cTTAGTCATACTGATTGTCACACCAGATTCTTTATATACCGTGACTTCATCCATTAAAGATTCGATTAAAAATAAACCTAGGCCACCTTCGCGTAAAAAGTCTATATTTTCGTCTTTATCGTACGACCCTATTTTTGAttt > 2:63502/1‑141 (MQ=255) gTCATACTGATTGTCACACCAGATTCTTTATATACTGTGAATTCATCCATTAAAGATTCGATTAAAAATAAACCTAGGCCACCTTCGCGTAAAAAGTCTATATTTTCGTCTTTATCGTAAGGACCTATCTTTGATTCAgtt < 1:279566/141‑1 (MQ=255) gATTGTCATACCTGATTCTTTATATACCGTGACTTCATCCATTAAAGATTCGATTAAAAATAAACCTAGGCCACCTTCGCGTAAAAAGTCTATATTTTCGTCTTTATCGTAAGGACCTATTTTTGATTTAGTTGTTTCATa < 2:308911/141‑1 (MQ=255) gATTGTCACACCAGATTCTTTATATACCGTGACTTCATCCATTAAAGATTCGATTAAAAATAAACCTAGGCCACCTTCGCGTAAAAAGTCTATATTTTCGTCTTTATCGTAAGGACCTATTTTTGATTTAGTTGTTTCATa < 2:314746/141‑1 (MQ=255) cacaCCAGATTCTTTATATACTGTGACTTCATCCATTAAAGATTCGATTAAAAATAAACCTAGGCCACCTTCGCGTAAAAAGTCTATATTTTCGTCTTTATCGTAAGGACCTATTTTTGATTTAGTTGTTTCATAATCaaa > 1:384905/1‑141 (MQ=255) ccAGATTCTTTATATACTGTGACTTCATCCATTAAAGATTCGATTAAAAATAAACCTAGGCCACCTTCGCGTAAAAAGTCTATATTTTCGTCTTTATCGTAAGAACCTATTTTTAATTTAGTTGTTTTCTAATCAAAAcgg > 1:148363/1‑139 (MQ=255) ccAGAAACTTTATATACTGTGACTTCATCACTTAGAGATTCGCTTAAAAATAAACCTAGGCCACCTTCGCGTAAAAAGTCTATATTTTCATCTTCATCATCCGTACCTATTTTTGATTTAGTTGTTTCATAATCAGAACTg > 2:140552/1‑141 (MQ=255) aTTCTTTATATACCGTGACTTCATCCATTAAAGATTCGATTAAAAATAAACCTAGGCCACCTTCGCGTAAAAAGTCTATATTTTCGTCTTTATCGTAAGGACCTATTTTTGATTTAGTTGTTTCATAATCAAAACTGTCAc > 2:70407/1‑141 (MQ=255) aTTCTTTATATACCGTGACTTCATCCATTAAAGATTCGATTAAAAATAAACCTAGGCCACCTTCGCGTAAAAAGTCTATATTTTCGTCTTTATCGTAAGGACCTATTTTTGATTTAGTTGTTTCATAATCAAAACTGTCAc > 2:87868/1‑141 (MQ=255) tatataCTGTGACTTCATCCATTAAAGATTCGATTAAAAATAAACCTAGGCCACCTTCGCGTAAAAAGTCTATATTTTCGTCTTTATCGTAAGGACCTATTTTTGATTTAGTTGTTTCATAATCAAAACTGTCACCTTTAt > 1:385164/1‑141 (MQ=255) tatataCTGTGACTTCATCCAGTAAAGATTCGATTAAAAATAAACCTAGGCCACCTTCGCGTAAAAAGTCTATATTTTCGTCTTTATCGTAAGGACCTATTTTTGATTTAGTTGTTTCATAATCAAAACTGTCACCTTTAt > 1:310214/1‑141 (MQ=255) | TGGTGTTCTTTAATCCATTGGTTAATTTGCTCAGGTGAAATTTCATTAGCTGATTTCGACTCTTTCGCCATTATTTCGCACCTG‑CTCTTTTTTTATATACTTAGTCATACTGATTGTCACACCAGATTCTTTATATACTGTGACTTCATCCATTAAAGATTCGATTAAAAATAAACCTAGGCCACCTTCGCGTAAAAAGTCTATATTTTCGTCTTTATCGTAAGGACCTATTTTTGATTTAGTTGTTTCATAATCAAAACTGTCACCTTTAT > USA300TCH1516_ALE/2186090‑2186361 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |