Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000731 81 N→G 100% intergenic (–/‑151) – / → repA –/replication protein A

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000731810NG100.0% 931.1 / NA 270intergenic (–/‑151)–/repA–/replication protein A
Reads supporting (aligned to +/- strand):  ref base N (0/0);  new base G (146/124);  total (146/124)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 270 total aligned reads displayed.

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGA  >  CP000731/1‑220
                                                                                                                                           |                                                                                                                                           
gatatttatcaagggtttataaacccttgataaagctatattttcccgtttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCAGGGTTTGGTAATAAAACGTTTAGa                                                                                                                                            <  2:253012‑M1/82‑1 (MQ=255)
 atatctatcaagggtttataaacccttgataaagctaacttttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGaa                                                                                                                                           >  2:614909‑M1/59‑141 (MQ=255)
  tatttatcaagggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTCGaaa                                                                                                                                          >  1:748021‑M1/58‑141 (MQ=255)
    tttgtcaaaggtttataaatccttgataaagctatacttccccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAAAAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACt                                                                                                                                        >  2:745396‑M1/56‑141 (MQ=255)
         caagggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGttta                                                                                                                                   >  1:852105‑M1/51‑141 (MQ=255)
           agggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttatt                                                                                                                                 <  1:907929‑M1/93‑1 (MQ=255)
             ggtttataagcccttcataaagctatattttcccctttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAAATACTGGTCATAGTCGGGGTTTGGTAATAAAATGTTTAGAAACTGtttattta                                                                                                                               >  1:646086‑M1/47‑141 (MQ=255)
             ggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTCAGAAACTGtttattta                                                                                                                               >  1:527815‑M1/47‑141 (MQ=255)
             ggtttagaaacccttgataaagcttgattttcccttttataagtttATTTAATGTGCTATAATAAACTTAATATAACAAAAACCGCAGCTGCTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttattta                                                                                                                               >  2:118541‑M1/47‑141 (MQ=255)
                ttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtatat                                                                                                                            >  1:187215‑M1/44‑141 (MQ=255)
                ttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtatat                                                                                                                            <  1:655229‑M1/98‑1 (MQ=255)
                ttataaacccttgataaagctatattttcccctttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATATTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtatat                                                                                                                            >  2:903690‑M1/44‑141 (MQ=255)
                   taaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAt                                                                                                                         <  1:109769‑M1/101‑1 (MQ=255)
                   taaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAt                                                                                                                         >  1:620918‑M1/41‑141 (MQ=255)
                   taaaaccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAAATACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAt                                                                                                                         >  2:273701‑M1/41‑141 (MQ=255)
                    aaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAtt                                                                                                                        <  1:161103‑M1/102‑1 (MQ=255)
                    aaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAtt                                                                                                                        >  1:725999‑M1/40‑141 (MQ=255)
                     aacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATCAAGTTAATTTATCAGAGACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAttt                                                                                                                       <  2:265481‑M1/103‑1 (MQ=255)
                     aacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAttt                                                                                                                       <  2:777455‑M1/103‑1 (MQ=255)
                      acccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAtttt                                                                                                                      <  1:604524‑M1/104‑1 (MQ=255)
                      acccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAtttt                                                                                                                      <  1:579049‑M1/104‑1 (MQ=255)
                      acccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAtttt                                                                                                                      <  1:49359‑M1/104‑1 (MQ=255)
                         cttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGa                                                                                                                   >  2:495274‑M1/35‑141 (MQ=255)
                             ataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACt                                                                                                               >  1:458177‑M1/31‑141 (MQ=255)
                             ataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACt                                                                                                               >  1:406682‑M1/31‑141 (MQ=255)
                               aaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTg                                                                                                             <  2:142924‑M1/113‑1 (MQ=255)
                                 agctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGta                                                                                                           >  1:1010424‑M1/27‑141 (MQ=255)
                                  gctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGtat                                                                                                          >  1:418758‑M1/26‑141 (MQ=255)
                                   ctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATAAATTAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGtatt                                                                                                         >  1:503283‑M1/25‑141 (MQ=255)
                                     atattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGtattat                                                                                                       <  1:995144‑M1/119‑1 (MQ=255)
                                       attttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATtatat                                                                                                     >  2:32936‑M1/21‑141 (MQ=255)
                                       attttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATAATTGTATtatat                                                                                                     <  2:1030498‑M1/121‑1 (MQ=255)
                                           tcccttttataagtttATTTAAAGTGCTATAATACACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGAGTTGGTAATAAATCGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATg                                                                                                 <  2:376727‑M1/125‑1 (MQ=255)
                                            cccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGa                                                                                                >  2:859988‑M1/16‑141 (MQ=255)
                                            cccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGa                                                                                                >  2:589159‑M1/16‑141 (MQ=255)
                                                 ttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAatgaattat                                                                                           <  1:1049292‑M1/131‑4 (MQ=255)
                                                 ttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataat                                                                                           >  1:807324‑M1/11‑141 (MQ=255)
                                                    taagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATc                                                                                        <  1:842381‑M1/134‑1 (MQ=255)
                                                     aagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCt                                                                                       <  1:230049‑M1/135‑1 (MQ=255)
                                                     aagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCAGGGTTTGGTAATAAAACGTTTAGAAACTGCTTATTTATATAATTTTCGATACTTTTATTATATAATGAATAATATCt                                                                                       <  2:75499‑M1/135‑1 (MQ=255)
                                                      agtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCtt                                                                                      <  1:537126‑M1/136‑1 (MQ=255)
                                                       gtttATATAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAAATGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATcttt                                                                                     <  2:667951‑M1/137‑2 (MQ=255)
                                                          tATTTAAAGTTCAATAATAATCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTg                                                                                  >  2:962168‑M1/2‑141 (MQ=255)
                                                          tATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACAGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTg                                                                                  <  2:221208‑M1/140‑1 (MQ=255)
                                                           aTTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGc                                                                                 <  2:984033/141‑1 (MQ=255)
                                                              tgaaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTTCTTGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTGGTGCAAg                                                                              <  1:665363/139‑1 (MQ=255)
                                                               aaaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGc                                                                             <  1:275701/141‑1 (MQ=255)
                                                                aaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATCATTTTCGATACTTGTATTATATAATGAATAATATCTTAATGCAAGCa                                                                            >  1:15120/1‑141 (MQ=255)
                                                                 aGTGCTATAATAAACTTAATATAACAAAAACCCCAACTCCTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGCAACTGTTTATTTATATAATTTTCGATACCTGTATTATATAATGAATAATATCTTAGTGCAAGCAc                                                                           <  1:483163/141‑1 (MQ=255)
                                                                 aGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAc                                                                           <  1:558044/141‑1 (MQ=255)
                                                                  gggCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAcc                                                                          <  2:342383/139‑1 (MQ=255)
                                                                  atGCTATAATCAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTTTTTATTTATATAATTTTCGATACTTTTATTATATAATGAATAATATCTTAGTGCAAGCAcc                                                                          <  1:1025316/140‑1 (MQ=255)
                                                                    gCTATAATAAACTTAATATACCAAAAACCCCAACTCCTGGTAATCGTCGGGGTTTGGTAATAACACGTCTAGAAACTGTTTATTTATATAATTCTCGATACATGTATTATATAATGAATAATATCTTAGTGCAaccacccc                                                                        >  2:352538/1‑139 (MQ=255)
                                                                        taataaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATc                                                                    >  2:409722/1‑141 (MQ=255)
                                                                          ataaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCAt                                                                  <  1:373996/141‑1 (MQ=255)
                                                                          ataaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCAt                                                                  >  1:326930/1‑141 (MQ=255)
                                                                            aaaCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATta                                                                >  1:792229/1‑141 (MQ=255)
                                                                              aCTTAATATAACAAAAACCCCAACTTATGGACTGTGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATtaaa                                                              >  1:513272/1‑141 (MQ=255)
                                                                              aCTTAATATAACAAAAACCCCAACTCCTGGTAATAGTCGTGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATtaaa                                                              <  2:823288/141‑1 (MQ=255)
                                                                               cTTAATATAACAAACACCCCAACTACGGGTTATAGTCGGGGTTTGGTAATAAAACGTTAAGAAACTGTTTATTTATATAATTTTCGATACTTGGATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATtatat                                                             <  2:186135/141‑1 (MQ=255)
                                                                               cTTAATATAACAAAAACCCCAACTACCGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATtaaat                                                             <  1:88435/141‑1 (MQ=255)
                                                                                  aaTATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATtaaataaa                                                          <  2:811171/141‑1 (MQ=255)
                                                                                  aaTATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATtaaataaa                                                          >  1:980262/1‑141 (MQ=255)
                                                                                  aaTATAACAAAAACACCAACTACTGGTAATAGTCGGGCTTTGGTAATAAACCGTTAAGAAAATGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGGAAGCACGTAAATCATtaaaaaaa                                                          >  2:53916/1‑141 (MQ=255)
                                                                                   atatAACAACAACACCAAATACTGGTAATAGTCGGGGTATGGTAATAAAACGTTTAGAAAGTGTTTATTTATATAATATTCAATACATGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTaaataaat                                                         >  2:499027/1‑141 (MQ=255)
                                                                                     ataACCAAAACCCCAACTACGGGTAATAGTCCGGGTTTGGCAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGt                                                       <  1:352368/141‑1 (MQ=255)
                                                                                        aCAAAAACCCCAACTACTGGTAATAGTCGGGGTTTTGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTaaa                                                    <  2:894966/141‑1 (MQ=255)
                                                                                         cAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAg                                                   >  1:953996/1‑141 (MQ=255)
                                                                                         cAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCGAAATCATTAAATAAATGTAAAg                                                   >  2:317771/1‑141 (MQ=255)
                                                                                            aaaCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCta                                                >  2:946796/1‑141 (MQ=255)
                                                                                                cccAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCtaaata                                            >  2:431583/1‑141 (MQ=255)
                                                                                                cccAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCtaaata                                            <  2:120740/141‑1 (MQ=255)
                                                                                                 ccAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCtaaataa                                           >  2:366877/1‑141 (MQ=255)
                                                                                                 ccAACTACTGGTAATAGTCGGAGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCtaaataa                                           >  1:552422/1‑141 (MQ=255)
                                                                                                  cagctactGGGAATAGTCGGGGTTTGTTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCtaaataaa                                          <  1:20765/138‑1 (MQ=255)
                                                                                                  cAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCtaaataaa                                          >  1:608342/1‑141 (MQ=255)
                                                                                                     ctactGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGTAACTGTTAATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAAGCATTAGATAAATGTAAAGCTAAATAAAAAc                                       >  2:664416/1‑141 (MQ=255)
                                                                                                      ttatGGTAATAGTCGGGGTTTGGTAATAAAACGTCTAGAAACTGTTTAGTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTATTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACg                                      <  2:206829/138‑1 (MQ=255)
                                                                                                       actGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGt                                     >  1:962701/1‑141 (MQ=255)
                                                                                                              aTAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTttatta                              <  2:536821/141‑1 (MQ=255)
                                                                                                                 gTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACct                           >  2:987259/1‑141 (MQ=255)
                                                                                                                  tCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACctc                          >  2:511290/1‑141 (MQ=255)
                                                                                                                  tCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACctc                          >  2:799114/1‑141 (MQ=255)
                                                                                                                   cGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACctct                         <  1:284901/141‑1 (MQ=255)
                                                                                                                    ggggTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCtt                        >  1:261740/1‑141 (MQ=255)
                                                                                                                    ggggTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCtt                        >  2:301666/1‑141 (MQ=255)
                                                                                                                    ggggTTTGGGTATAAAACGTTTAGAAACGGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCtt                        <  2:168622/141‑1 (MQ=255)
                                                                                                                       ggttGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTAcc                     <  1:399456/139‑1 (MQ=255)
                                                                                                                       gTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTAcc                     <  2:1012119/141‑1 (MQ=255)
                                                                                                                         ttGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCaa                   >  1:1054988/1‑141 (MQ=255)
                                                                                                                          tGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTAATTACCTCTTACCaaa                  >  2:725236/1‑141 (MQ=255)
                                                                                                                           ggTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACTAAAc                 >  1:926595/1‑141 (MQ=255)
                                                                                                                           ggTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAAc                 >  2:603805/1‑141 (MQ=255)
                                                                                                                                taaAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTaaaa            <  1:858895/141‑1 (MQ=255)
                                                                                                                                 aaaaCGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAat           <  2:447313/141‑1 (MQ=255)
                                                                                                                                       tttAGAAATTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTTCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGaa     <  2:679961/141‑1 (MQ=255)
                                                                                                                                       tttAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCGCTTACCAAACTAAAATATGGaa     <  2:775494/141‑1 (MQ=255)
                                                                                                                                        ttAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGaaa    >  1:433539/1‑141 (MQ=255)
                                                                                                                                         tAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAag   <  2:1049133/141‑1 (MQ=255)
                                                                                                                                          aGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGaaaaa  >  2:62286/1‑139 (MQ=255)
                                                                                                                                           |                                                                                                                                           
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGA  >  CP000731/1‑220

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑