| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 162,116 | G→A | 8.5% | A205V (GCA→GTA) | phnE_2 ← | Phosphate‑import permease protein PhnE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 162,116 | 0 | G | A | 8.5% | 222.4 / 2.9 | 80 | A205V (GCA→GTA) | phnE_2 | Phosphate‑import permease protein PhnE |
| Reads supporting (aligned to +/- strand): ref base G (35/36); new base A (4/4); total (40/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
CGACGATAACTAAAGTAAATAAAATAATCGTTGCTGTTTTTGGATATTGAAATAAACCAAGTGTTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCATTGCTTCCATTGGACCTGGATCTATCGTTTCCAATGATTCATATAATA > USA300TCH1516_ALE/161976‑162254 | cgacgaTAACTAAAGTAAATAAAATAATCGTTGCTGTTTTTGGATATTGAAATAAACCAAGTGTTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATg > 1:895476/1‑141 (MQ=255)cgacgaTAACTAAAGTAAATAAAATAATCGTTGCTGTTTTTGGATATTGAAATAAACCAAGTGTTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATg > 1:839668/1‑141 (MQ=255)cgacgaTAACTAAAGTAAATAAAATAATCGTTGCTGTTTTTGGATATTGAAATAAACCAAGTGTTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCGGAAGCCCGTATATTTACTTCAACTg > 1:764318/1‑141 (MQ=255) aacgaTAACTAAAGTAAATAAAATAATCGTTGCTGTTTTTGGATATTGAAATAAACCAAGTGTTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGc < 1:165965/140‑1 (MQ=255) aTAACTAAAGTAAATAAAATAATCGTTGCTGTTTTTGGATATTGAAATAAACCAAGTGTTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCatat < 1:554762/141‑1 (MQ=255) aaCTAAAGTAAATAAAATAATCGTTGCTGTTTTTGGATATTGAAATAAACCAAGTGTTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATataa < 1:174508/141‑1 (MQ=255) aaCTAAAGTAAATAAAATAACCGTTGCTGTTTTTGGATATTGAAATAAACCACGGCTGTAAGCATAAAACAATCCAATACCGCGAGCGCCGACTAAACCAAGAACACCTTAAGCACGTCTATTTACTTCCAATCCATctaa > 2:402275/1‑141 (MQ=255) cTAAAGTAAATAAAATAATCGTTGCTGTTTTTGGATATTGAAATAAACCAAGTGTTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCCCGTAACTTAACTTCAAATGAATatcata > 2:939863/1‑141 (MQ=255) aaGTAAATAAAATAATCGTTGCTGTTTTTGGATATTGAAATAAACCAAGTGTTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCGAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGt < 2:327462/141‑1 (MQ=255) taaaagaaTTGTTGCTGTTTTTGGAAACTGAAATAATCCAAATGTTGTATCACAAAACAATCCACTACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACAt < 1:75913/141‑1 (MQ=255) aaataaTCGTTGCTGTTTTTGGATATTGAAATAAACCAAGTGTTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATAAAATGCGTATGACATaa > 2:838570/1‑141 (MQ=255) aataatCGTTGCTGTTTTTGGATATTGAAATAAACCAAGTGTTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATaaa < 1:700471/141‑1 (MQ=255) ataatCGTTGCTGTTTTTGGATATTGAAATAAACCAAGTGTTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTCTATTTACTTCAAATGCATATAATACGTATGACATAAAt < 1:681420/141‑1 (MQ=255) ataatCGTTGCTGTTTTTGGATATTGAAATAAACCAAGTGTTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATATACTTCAAATGCATATAATACGTATGACATAAAt > 2:846098/1‑141 (MQ=255) ataatCGTTGCTGTTTATGGATATTGAAATAAACCAAGAGTTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATCTTTACTTCAAATGCATATAATACGTATGACATAAAt > 1:590835/1‑141 (MQ=255) taatCGTTGCTGTTTTTGGATATTGAAATAAACCAAGTGTTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATACATATAATACGTATTACATAAATg > 1:279878/1‑141 (MQ=255) taatCGTTGCTGTTTTTGGATATTGAAATAAACCAAGTGTTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATACATATAATACGTATGACATAAAta > 1:279670/1‑140 (MQ=255) taatCGTTGCTGTTTTTGGATATTGAAATAAACCAAGTGTTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATACATATAATACGTATGACATAAATg > 1:760347/1‑141 (MQ=255) atCGTTGCTGTTTTTGGATATTGAAATAAACCAAGTGTTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCGTATATTACGTATGACATAAATGAc > 2:589301/1‑141 (MQ=255) tGCTGTTTTTGGATATTGAAATAAACCAAGTGTTTGATCATAAAACAATCCAATCCCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGatat < 2:596641/141‑1 (MQ=255) tGCTGTTTTTGGATATTGAAATAAACCAAGTGTTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGatat < 1:11661/141‑1 (MQ=255) tGCTGTTTTTGGAAATTGAAATAAACCAAGTGTTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGatat < 1:1013781/141‑1 (MQ=255) tttgtGGATATTGAAATAAACCAAGTGTTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCtt < 1:355717/141‑1 (MQ=255) tGGATATTGAAATAAACCAAGTGTTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTgg < 2:930891/141‑1 (MQ=255) tatTGAAATAAACCAAGTGTTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATACATATAATACGTATGACATAAATGGCGATATGGCTTGTgggaaa > 2:631301/1‑137 (MQ=255) aaTAAACCAAGTGTTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCg < 2:853367/141‑1 (MQ=255) aTAAACCGAGTGTTTGATCATAACACAATCCAACCCCGCCAGCGCCGACTATTCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCAGATAATACGTAGGACATAAATGACGATATGGCTTGTGGTACAACACCGa < 2:876819/141‑1 (MQ=255) aTAAACCGAGTGTTTGATCATAAAACAATGCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACCTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGa < 1:638911/141‑1 (MQ=255) aagccAAGTGTATGATCATAACACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGaaa < 1:1032566/138‑1 (MQ=255) aaCCAAGTGTTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGaaaa > 1:332435/1‑141 (MQ=255) aaCCAAGTGTTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGaaaa > 1:912990/1‑141 (MQ=255) aCCAAGTGTTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAAc > 1:688213/1‑141 (MQ=255) aCCAAGTGTTTGATCATAAAACAAACCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGAAGATATAGCTTGGGGTACAACACCAaaaaa > 2:751461/1‑140 (MQ=255) gtTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCat > 1:997579/1‑141 (MQ=255) tttGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCatt < 2:839668/141‑1 (MQ=255) tCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCattttatt > 2:98575/1‑141 (MQ=255) cATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCattttattt > 1:1009597/1‑141 (MQ=255) aTAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCattttatttt > 1:800951/1‑141 (MQ=255) aaTCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGGTATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAgcc > 1:83947/1‑140 (MQ=255) tCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAACTGCATATAATACGTATGCACTCTCTGCGGATAGGGCTTGTGGTACAACACCGAAAACAATCACTTTTATTTTATTAGCGcc > 1:244255/1‑141 (MQ=255) ccAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCa < 1:1050166/141‑1 (MQ=255) cAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCaa > 1:386854/1‑141 (MQ=255) attccGCCAGCGCCGACGAATCCAAGCACAGCTGAAGCACGTATATTTACTGCAAATGCAGATAATACGTAGGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACa < 1:1011642/138‑1 (MQ=255) aTACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACa < 1:155867/141‑1 (MQ=255) aTACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACa < 2:627652/141‑1 (MQ=255) aTACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACa < 2:57073/141‑1 (MQ=255) aTACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACa < 2:556025/141‑1 (MQ=255) aGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTTTGGTACAACACCGAAAACAATCCATTTTATTTTATAAGCGCCAACAGCCgccgt > 2:424115/1‑137 (MQ=255) aGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCAt < 2:875329/141‑1 (MQ=255) gcgcCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCAtt > 2:360644/1‑141 (MQ=255) gcgcCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCAtt < 1:875589/141‑1 (MQ=255) gcgcCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCAtt < 1:875481/141‑1 (MQ=255) cgcCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCATTg > 1:852852/1‑141 (MQ=255) cgaccaCTAATCCAAGAACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCATTg < 1:306704/136‑1 (MQ=255) ccGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCATTGCt < 1:679209/141‑1 (MQ=255) ccGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGAATGTAATGCTGATGACATCAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCATTGCt < 1:994133/141‑1 (MQ=255) tAAGCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACCATCCATTTTATTTTATTAGCGCCAACAGCCGTCATTGCTTCCAt < 2:25976/141‑1 (MQ=255) aaactcAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCATTGCTTCCAt < 2:789135/136‑1 (MQ=255) aaaTCCAAGCACAGCTGAAGCTCGTATATTTACTTCAAATACATATCATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCATTGCTTCCAt < 2:628824/140‑1 (MQ=255) gtCCAAGCACAGCTGAAGCACGTATATTTACTTCAAGTGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCATTGCTTCCATTg < 2:869979/140‑1 (MQ=255) aTCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGGCGACAGCCGTCATTGCTTACATTg > 1:753241/1‑141 (MQ=255) tCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATAACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCATTGCTTCCCTTgg > 2:307942/1‑141 (MQ=255) ccAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCATTGCTTCCATTGGa > 1:390324/1‑141 (MQ=255) cacaGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCATTGCTTCCATTGGACCTgg > 2:392497/1‑141 (MQ=255) cacaGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTACTTAGCGCCAACAGCCCTCAATGCTTCCATTGTACCTgg > 2:466529/1‑141 (MQ=255) caGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCATTGCTTCCATTGGACCTGGAt > 2:379836/1‑141 (MQ=255) caGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGAGCCAACAGACGTCATTGCTTCCATTGGAACTGGAt > 1:741157/1‑141 (MQ=255) aGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCATTGCTTCCATTGGACCTGGATCTATCGt < 1:878311/141‑1 (MQ=255) aGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCATTGCTTCCATTGGACCTGGATCTATCGt > 1:767972/1‑141 (MQ=255) aGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCATTGCTTCCATTGGACCTGGATCTATCGt < 1:87417/141‑1 (MQ=255) aGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCATTGCTTCCATTGGACCTGGATCTATCGt < 1:877482/141‑1 (MQ=255) aGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTCTATTAGCGCCAACAGCCGTCATTGCTTCCATAGGACCTGGATCTATCGt > 1:1011696/1‑141 (MQ=255) aagTATATATACTACATACGCACACAATACGTATCACATAAATGACGATATGTCTTGTTGTACAACACCGAATACAATCCATTTTATTTAATTAGCGCCAACAGCCGTCATTGCTTCCATTGGACCTGGATCTATCGTTTc < 2:822011/139‑1 (MQ=255) cGTATATTTACTTCAAATACATATAATACGTATGACATAAATGACGATATGGCTTGTGGTGCAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCATTGCTTCCATTGGACCTGGATCTATCGTTTcc < 2:760347/141‑1 (MQ=255) cGTATATTTACTTCAAATACATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACATTCCATGTTATTTTATTAGCGCCAACAGCCGTCATTGCTTCCATTGGACCTGGATCTATCGTTTcc < 2:279670/141‑1 (MQ=255) cGTATATTTACTTCAAATACATATAATACGTATGACATAAATGACCATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCATTGCTTCCATTGGACCTGGATCTATCGTTTcc < 2:279878/141‑1 (MQ=255) gTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCATTGCTTCCATTGGACCTGGATCTATCGTTTCCa > 2:662074/1‑141 (MQ=255) tttACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCATTGCTTCCATTGGACCTGGATCTGTCGTTTCCAATggt > 1:383208/1‑139 (MQ=255) tttACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCATTGCTTCCATTGGACCTGGATCTATCGTTTCCACTGAt > 1:383187/1‑141 (MQ=255) ttCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCATTGCTTCCATTGGACCTGGATCTATCGTTTCCAATGATTCata > 1:9726/1‑141 (MQ=255) tCAAATGCATATAATAGGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCATTGCTTCCATTGGACCTGGATCTATCGTTTCCAATGATTCatat > 1:631271/1‑141 (MQ=255) aaTGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCATTGCTTCCATTGGACCTGGATCTATCGTTTCCAATGATTCATataat > 1:336695/1‑141 (MQ=255) aTGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCATTGCTTCCATTGGACCTGGATCTATCGTTTCCAATGATTCATataata > 1:820937/1‑141 (MQ=255) | CGACGATAACTAAAGTAAATAAAATAATCGTTGCTGTTTTTGGATATTGAAATAAACCAAGTGTTTGATCATAAAACAATCCAATACCGCCAGCGCCGACTAATCCAAGCACAGCTGAAGCACGTATATTTACTTCAAATGCATATAATACGTATGACATAAATGACGATATGGCTTGTGGTACAACACCGAAAACAATCCATTTTATTTTATTAGCGCCAACAGCCGTCATTGCTTCCATTGGACCTGGATCTATCGTTTCCAATGATTCATATAATA > USA300TCH1516_ALE/161976‑162254 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |