Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2176686–2181131	2181131	1–4446	25 [24]	[24] 25	ilvA/USA300TCH1516_02069	L‑threonine dehydratase biosynthetic IlvA/tRNA‑Gly

TGGCCGATCACCCTCTCAGGTCGGCTATGCATCGTTGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATCATCCGGTATTAGCTCCGGTTTCCCGAAGTTATCCCAG  >  USA300TCH1516_ALE/2181095‑2181272                                      |                                                                                                                                             tgGCCGGTCACCCACTCGGGTCGGCTATGCATCGTTGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATatc                                       <  2:299185/141‑1 (MQ=2)  gcgggcgcACCCGCGCAGGTGTGCTATGCATCGTTGCCTGGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATatca                                      >  2:462116/8‑141 (MQ=11)      gATCACCCTCTCAGGTCGGCTATGCATCGTTGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATCATCCg                                  <  1:702794/141‑1 (MQ=32)       aTCCCCCTGTCCGGTCGGCTATGCATCGTTGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATCATCCgg                                 <  2:774450/141‑1 (MQ=12)        tCACCCTCTCAGGTCGGCTATGCATCGTTGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATCATCCGGt                                <  1:277761/141‑1 (MQ=32)        tCACCCTCTCAGGTCGGCTATGCATCGTTGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATCATCCGGt                                <  2:293985/141‑1 (MQ=32)            ccTCTCAGGTCGGCTATGCATCGTTGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATCATCCGGTATTa                            >  2:736090/1‑141 (MQ=32)             ctctCAGGTCGGCTATGCATCGTTGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATCTTCCGGTATTAg                           >  1:177365/1‑141 (MQ=17)             ctctCAGGTCGGCTATGCATCATTGCCTTGGTAAGCCGTTACCTTACCAACTAGATAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTATTTCACTTTTGAACCATACGGTTCAAAATATCATCCAGGATTAg                           >  2:26498/1‑141 (MQ=11)               ctcAGGTCGGCTATGCATCGTTGCCTTGGTAAACCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTAACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATCTCATCCAGTCTTaacc                         >  2:28884/1‑138 (MQ=11)                    gTCGGCTATGCATCGTTGCCTGGGTAAGCCGTTACCTTACCAACTAGCTAGTGCGGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCCTTCACGTTTGAACCATGCGGTTCAAAATATCATCCGGTATTAGCCTCGGt                    >  2:240698/1‑141 (MQ=11)                     tCGGCTATGCATCGTTGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATCATCCGGTATTAGCTCCGGtt                   >  1:237776/1‑141 (MQ=32)                           aTGCATCGTTGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCACAATCTCATCCTGTATTAGCTCCGGTTTCCCGa             <  2:636845/141‑1 (MQ=12)                              cctCGTTGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATCATCCGGTATTAGCTCCGGTTTCCCGAAGt          <  2:332970/139‑1 (MQ=17)                                 cGTTGCCTTGGTAAGCCGTTACGTTACCAACGAGCTGATGGAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATCCTCCGGTATTAGCTCCGGTTTCCCGAAGTTAt       <  2:639999/141‑1 (MQ=11)                                  gTTGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGTGGTTCAAAATATCATCCGGTATTAGCTCCGGTTTCCCGAAGTTATc      <  1:779645/141‑1 (MQ=17)                                  gTTGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATCATCCGGTATTAGCTCCGGTTTCCCGAAGTTATc      <  2:250774/141‑1 (MQ=32)                                  gTTGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATCATCCGGTATTAGCTCCGGTTTCCCGAAGTTATc      >  1:90576/1‑141 (MQ=32)                                  gTTGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATCATCCGGTATTAGCTCCGGTTTCCCGAAGTTATc      <  1:597100/141‑1 (MQ=32)                                  gTTGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATCATCCGGTATTAGCTCCGGTTTCCCGAAGTTATc      >  2:97592/1‑141 (MQ=32)                                  gTTGACTTGGTAATCCGTTACCTGACCAACTAGCTAATGCAGCGCGGATCCATCTAGAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATCATCCGGTATTAGCTCCGGTTTCCCGAAGTTATc      >  2:461697/1‑141 (MQ=255)                                   ttGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATCATCCGGTATTAGCTCCGGTTTCCCGAAGTTATcc     >  2:339120/1‑141 (MQ=32)                                   ttGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATCATCCGGTATTAGCTCCGGTTTCCCGAAGTTATcc     >  2:571724/1‑141 (MQ=32)                                    tGCCTTGGTAATCCGTTACCTTACCAACTAGCTGATGCCGCTCCGGTCCATCTATACGTGATAGCAAACCCGTCTGTCACTCTTGTACCATGCACTTCAAAATATCATCCGTTATTAGCGCCGGTTTTCCGCGGTTATtcc    <  2:245365/141‑1 (MQ=2)                                      ccTTGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATCATCCGGTATTAGCTCCGGTTTCCCGAAGTTATCCCAg  <  1:45904/141‑1 (MQ=32)                                      |                                                                                                                                             TGGCCGATCACCCTCTCAGGTCGGCTATGCATCGTTGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGCGGATCCATCTATAAGTGACAGCAAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATCATCCGGTATTAGCTCCGGTTTCCCGAAGTTATCCCAG  >  USA300TCH1516_ALE/2181095‑2181272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑