| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,231,407 | G→A | E18K (GAA→AAA) | stp → | Serine/threonine phosphatase stp |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,231,407 | 0 | G | A | 77.9% | 269.3 / 79.8 | 137 | E18K (GAA→AAA) | stp | Serine/threonine phosphatase stp |
| Reads supporting (aligned to +/- strand): ref base G (10/20); new base A (57/49); total (67/70) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.27e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.16e-01 | |||||||||||
Only 100 of 138 total aligned reads displayed.
TACGTCGTGAACAAGGTTCGGATATTGACGCAGCTTGTGGTCAATTAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGTTTTGAAGCGGAAAAT > USA300TCH1516_ALE/1231270‑1231547 | tACGTAGTGAACAAGGTTCGGATATTGACGCAGCTTGTGGTCAATTAAGAGCAAAGGAACGACAAGGAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAg > 4:22384/1‑141 (MQ=255) gtcgtGAACAAGGTTCGGATATTGACGCAGCTTGTGGTCAATTAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATg > 1:25504/1‑141 (MQ=255) cgtGAACAAGGTTCGGATATTGACGCAGCTTGTGGTCAATTAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCg > 1:519149/1‑141 (MQ=255) aaGGTTCGGATATTGAAGCAGCTTTTGGTAAATTAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTa < 1:389437/141‑1 (MQ=255) aGGTTCGGATATTGACGCAGCTTGTGGTCAATTAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTAt > 2:395318/1‑141 (MQ=255) gTTCGGATATTGACGCAGCTTGTGGTCAATTAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTAttt < 1:879322/141‑1 (MQ=255) cGGATATTGACGCAGCTTGTGGTCCCATAAGAGCAAAGGAACGACACGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATATAGATAAGACGGAAGATGCGGGTGGCAtcattt > 2:962745/1‑136 (MQ=255) cGGATATTGACGCAGCTTGTGGTCAATTAAGAGCAAAGTAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTAtttttt > 2:689412/1‑141 (MQ=255) cGGATATTGACGCAGCTTGTGGTCAATTAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATATAGATAAGAATGAAGATGCGGGTGGTAtttttt < 2:429261/141‑1 (MQ=255) cGGATATTGACGCAGCTTGTGGTCAATTAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTAtttttt > 1:985014/1‑141 (MQ=255) cGGATATTGACGCAGATTGTGGTCAATTAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATATAGATAAGAATGAAGATGCGGGTGGTAtttttt < 2:429278/141‑1 (MQ=255) ggATATTGACGCATCTTGTGGTCAATTAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGCATAAAGATGCGGGTGGTATTTTTta < 2:466643/141‑1 (MQ=255) gATATTGACGCAGCTTGTGGTCAATTAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTtat > 1:242266/1‑141 (MQ=255) atatTGACGCAGCTTGTGGTCAATTAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATATAGATAAGAATGAAGATGCGGGTGGTATTTTTtata > 2:812595/1‑141 (MQ=255) atTGACGCAGCTTGTGGTCAATTAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAAt > 1:723493/1‑141 (MQ=255) atTGACGCAGCTTGTGGTCAATTAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAAt < 1:375303/141‑1 (MQ=255) ttGACGCAGCTTGTGGTCAATTAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATc > 4:200914/1‑141 (MQ=255) ttGACGCAGCTTGTGGTCAATTAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATc > 4:343675/1‑141 (MQ=255) tGACGCAGCTTGTGGTCAATTAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCa > 3:151087/1‑141 (MQ=255) cGCAGCTTGTGGTCAATTAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAAc > 3:162755/1‑141 (MQ=255) cAGCTTGTGGTCAATTAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATATAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTa < 3:235946/141‑1 (MQ=255) cTTGTGGTCAATTAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATATAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATc < 1:356486/141‑1 (MQ=255) ggTCAATTAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATATAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATcaacaa > 3:309750/1‑141 (MQ=255) ggTCAATTAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATcaacaa < 3:226496/141‑1 (MQ=255) cAATTAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACtt > 1:473187/1‑141 (MQ=255) aaTTAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATATAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACttt < 1:660078/141‑1 (MQ=255) ttAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTa < 1:401869/141‑1 (MQ=255) aaGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGt < 4:445505/141‑1 (MQ=255) gagCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTc > 2:19149/1‑141 (MQ=255) gCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCtg > 1:443510/1‑141 (MQ=255) aaGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACttt < 3:171495/130‑1 (MQ=255) ggAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATATAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGa < 3:266757/141‑1 (MQ=255) gAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGAt < 2:357311/141‑1 (MQ=255) aaCGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATg > 2:168133/1‑141 (MQ=255) aCGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATgg < 3:408859/141‑1 (MQ=255) cGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGt > 1:118439/1‑141 (MQ=255) aaGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATATAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATgg < 4:389769/141‑1 (MQ=255) aaGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATgg > 1:539770/1‑141 (MQ=255) aGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATggg < 4:223878/141‑1 (MQ=255) tAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACAAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTg < 1:758595/141‑1 (MQ=255) aGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTgg < 2:967140/141‑1 (MQ=255) gAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATATAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGc < 2:743956/141‑1 (MQ=255) gAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGc > 2:706450/1‑141 (MQ=255) gAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGc < 2:760514/141‑1 (MQ=255) aaaCGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATATAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGcc < 1:600226/141‑1 (MQ=255) aaaCGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGcc < 3:27868/141‑1 (MQ=255) aaaCGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGcc > 3:128451/1‑141 (MQ=255) aaaCGAGGTAAAGAAAAATGATAGAGGAAAAATTTTTTACTGATAATGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTACTCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGcc < 4:36669/141‑1 (MQ=255) aaCGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATATAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCa < 4:323488/141‑1 (MQ=255) aagAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCAt < 1:763997/139‑1 (MQ=255) aCGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATATAGAGAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCAt < 1:1013537/141‑1 (MQ=255) gAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATaa < 2:78264/141‑1 (MQ=255) aGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATaaa > 2:256840/1‑141 (MQ=255) aaaGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATATAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAg > 4:337119/1‑141 (MQ=255) aaGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATATAGATAAGAATGACGCTGCGGGTGGTATTTTTTATAATCACACTACTCAACAAATTTTAGTCCTGTGTTATGGTATGGGTGGCCATAAAGCAgg < 1:153088/141‑1 (MQ=255) aGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGga > 3:157600/1‑141 (MQ=255) gACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGgag < 2:816300/141‑1 (MQ=255) gACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGgag < 1:1046668/141‑1 (MQ=255) aCAAATGCTAGAGGCACAATTTTTTACTTATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGgaga > 2:598072/1‑141 (MQ=255) aCAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGgaga > 1:4974/1‑141 (MQ=255) aTGCTAGAGGCACAATTTTTTACTTTTACTGGACAACATATAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGtt > 2:854832/1‑141 (MQ=255) tGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTg > 4:27486/1‑141 (MQ=255) cTAGAGGCACAATTTTTTACTGATACTGGACGAGATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCa < 4:169573/141‑1 (MQ=255) cTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCa > 1:420798/1‑141 (MQ=255) cTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCa > 2:282976/1‑141 (MQ=255) cTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCa > 2:283098/1‑141 (MQ=255) cTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCa < 1:149447/141‑1 (MQ=255) agagGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAg < 4:326188/141‑1 (MQ=255) gagGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGt < 2:990321/141‑1 (MQ=255) agGCACAATTTTTTACTGATACTGGACAGCATAGAGATAAGAATAAAGAGGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTa < 2:90698/141‑1 (MQ=255) agGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTa > 1:960696/1‑141 (MQ=255) aaTTTTTTACTGATACTGGACAACATATAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTg > 1:587622/1‑141 (MQ=255) aaTTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCCTAACGCAGGAGAAGTTGCAAGTAAACTTg > 1:35057/1‑141 (MQ=255) aaTTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTg > 2:804526/1‑141 (MQ=255) aTTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGt < 1:146835/141‑1 (MQ=255) ttttttACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGtt < 1:945111/141‑1 (MQ=255) tttttACTGATACTGGACAACATATAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTa > 3:136501/1‑141 (MQ=255) tttttACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTa > 3:195748/1‑141 (MQ=255) tttACTGATACTGGACAACATATAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACa < 4:405666/141‑1 (MQ=255) aCTGATACTGGACAACATATAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGAt < 3:344736/141‑1 (MQ=255) cTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATg > 1:272795/1‑141 (MQ=255) ctagACAACATAGAGATAAGAAAAAAGATGCGGGTGGTATTTTTTATAATAAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGa < 4:434636/138‑1 (MQ=255) cTGGACAACATATAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGa < 1:68018/141‑1 (MQ=255) cTGGACAACATATAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGa < 1:650337/141‑1 (MQ=255) tGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGaa < 1:305088/141‑1 (MQ=255) caacaTATAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTCTTAGTTCTGTGTGATGGTATGGGTGGACATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATCAGTTGAAATcc > 2:790817/1‑141 (MQ=255) acaTAGAGATAAGAATAAAGATGCGGGTGGTCTTTTTTATACTCAAACTAATCAACAACTTTAAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGCAGTGGCAAGTAAAATTGTTACAGATGATTTGAAATCCCg > 2:618314/1‑141 (MQ=255) acaTAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCg < 1:442696/141‑1 (MQ=255) acaTAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCg < 2:921274/141‑1 (MQ=255) acaTAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCg < 2:723493/141‑1 (MQ=255) tAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGttt < 2:519149/141‑1 (MQ=255) tAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGttt < 2:538110/141‑1 (MQ=255) tAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGttt < 3:23665/141‑1 (MQ=255) gagaTAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTAGTTACAGATGAGTTGAAATCCCGtttgg > 4:141512/1‑139 (MQ=255) aTAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGTTTTGAAg < 1:706450/141‑1 (MQ=255) aaGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGTTTTGAAGCg > 2:435732/1‑141 (MQ=255) aaGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGTTTTGAAGCg > 2:460456/1‑141 (MQ=255) aaGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGTTTTGAAGCg > 2:34457/1‑141 (MQ=255) aGAATAAAGATGCGGGTGGTATTTTTTATAATCAAAGTAATCAACAACTTTTAGTTCACTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATCTGTTAGCGATGAGTTAACATCCCGTTTTGAAGCgg > 2:570220/1‑141 (MQ=255) aGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGTTTTGAAGCgg > 3:89679/1‑141 (MQ=255) | TACGTCGTGAACAAGGTTCGGATATTGACGCAGCTTGTGGTCAATTAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGTTTTGAAGCGGAAAAT > USA300TCH1516_ALE/1231270‑1231547 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |