BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2085309	67 (0.740)	3 (0.040)	3/232	NT	4.1%	coding (186/201 nt)	hlb_1	Phospholipase C
*	?	USA300TCH1516_ALE	2128358 =	80 (0.990)	3 (0.040)	3/232	NT	4.1%	coding (16/825 nt)	hlb_2	Phospholipase C
Rejected: Frequency below/above cutoff threshold.

Only 100 of 166 total aligned reads displayed.

CACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTTAAATTTAAAATTACA  >  USA300TCH1516_ALE/2085170‑2085449

tctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGga                                                                                                                                             <  2:14326‑M1/15‑1 (MQ=255)

   catttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACAggagaa                                                                                                                                          <  2:937508‑M1/18‑2 (MQ=255)

     tttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACtt                                                                                                                                        >  1:561724‑M1/122‑141 (MQ=255)

       aTTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACtttt                                                                                                                                      >  2:331899/1‑141 (MQ=255)

       aTTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACtttt                                                                                                                                      <  1:848687/141‑1 (MQ=255)

         tAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGgggcaatata                                                                                                                                    >  1:951356‑M1/1‑131 (MQ=255)

          tagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAAc                                                                                                                                   >  1:734650‑M1/117‑141 (MQ=255)

           agaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACa                                                                                                                                  >  1:453544‑M1/116‑141 (MQ=255)

           agaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacaaatcagggactccaaaaccaataactactgttgttacaaggtttctaTATATCCAAACTGGTGACTTttaaaa                                                                                                                                  <  2:280790‑M1/26‑3 (MQ=255)

              aaTTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATaa                                                                                                                               <  2:563180/141‑1 (MQ=255)

               aTTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATaaa                                                                                                                              <  1:1076150/141‑1 (MQ=255)

                   aatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGCCTTTTAACATAAAATTa                                                                                                                          <  1:1039346‑M1/34‑1 (MQ=255)

                    atttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTAc                                                                                                                         >  2:1090555‑M1/107‑141 (MQ=255)

                     tttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACt                                                                                                                        <  2:902758‑M1/36‑1 (MQ=255)

                      ttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACtt                                                                                                                       <  1:282831‑M1/37‑1 (MQ=255)

                         acgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATc                                                                                                                    >  1:124736‑M1/102‑141 (MQ=255)

                         aGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATc                                                                                                                    <  1:795443/141‑1 (MQ=255)

                           gaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCAt                                                                                                                  >  2:245944‑M1/100‑141 (MQ=255)

                             agaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTc                                                                                                                <  1:76228‑M1/44‑1 (MQ=255)

                               tGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaa                                                                                                              <  1:186847/141‑1 (MQ=255)

                                gCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaaa                                                                                                             <  1:217127/141‑1 (MQ=255)

                                 gacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaaaa                                                                                                            <  1:459741‑M1/48‑1 (MQ=255)

                                   aaaaaaaacaactaaaattttagaaagtttgtaatttagggacccattagggactccaaacccaataagtactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAg                                                                                                          >  2:416349‑M1/92‑141 (MQ=255)

                                    ttACTGACAATAGTGCCAAAGCCGAATCTAAGCAAGATGATACTGATTTGAAGTTAGTTAGTAATAACGTTTATATGTTATCGACCGTCTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGt                                                                                                         >  1:793887/1‑141 (MQ=255)

                                      aCTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTaa                                                                                                       >  2:302110/1‑141 (MQ=255)

                                       aaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTaaa                                                                                                      <  2:267321‑M1/54‑1 (MQ=255)

                                        aaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggggtctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTaaaa                                                                                                     <  1:978615‑M1/55‑1 (MQ=255)

                                          acaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACa                                                                                                   <  1:693422‑M1/57‑1 (MQ=255)

                                           caactaaaattttagaaagtatgtcatatagggacccattagggactccaaaccaaataaatactgtagttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTCCTTATCATTCAAAAAGTAAAACAg                                                                                                  <  2:510007‑M1/58‑1 (MQ=255)

                                           caactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCACACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAg                                                                                                  <  2:399910‑M1/58‑1 (MQ=255)

                                              tAGTGCCAAAGCCGAATCTATGAAAGATGATACTGATTTGAAGTAAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATACAAACTGGAGACTTTTAACATGAAATTACTTATCATTCAAAAAGTAAAACAGCaa                                                                                               >  2:604363/1‑140 (MQ=255)

                                              tAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCat                                                                                               <  1:411499/141‑1 (MQ=255)

                                                 tGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataat                                                                                            >  2:70861/1‑141 (MQ=255)

                                                 aaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataat                                                                                            >  1:94688‑M1/78‑141 (MQ=255)

                                                  aattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGcataatt                                                                                           <  1:905042‑M1/65‑2 (MQ=255)

                                                          aaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTACAACAGCATAAAATAAAGGtt                                                                                   <  2:63914‑M1/73‑1 (MQ=255)

                                                           gAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGttt                                                                                  >  2:1001827/1‑141 (MQ=255)

                                                            aaacTAAGAAAGAATAAACTGATTTGAAGTTAGTTAGTAATAACGTTTATACGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTta                                                                                 <  2:828170/138‑1 (MQ=255)

                                                             aTCTAAGTAAGATGATACTCATTTGAAGTTAGTGAGTCATAACGTTCATTTGTTATCGACCGTTTTGTATCCAAACCGGAGACTTTTGACATAAAATTACTTATCATTCAAAATGTAAAACAGCATAATATCAAGGTTtat                                                                                <  1:879689/141‑1 (MQ=255)

                                                              tCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTGtata                                                                               >  1:514101/1‑141 (MQ=255)

                                                                tAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAAc                                                                             <  2:310560/141‑1 (MQ=255)

                                                                 gtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACt                                                                            >  1:454163‑M1/62‑141 (MQ=255)

                                                                  agaaagaTGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCACAAAGTAAAACAGCATAATATCAAGGTTTATAACtt                                                                           >  1:629451/1‑141 (MQ=255)

                                                                     aagaTGATACTTATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttat                                                                        <  2:894538/141‑1 (MQ=255)

                                                                         tgatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGgggcaatataaacgcgctgatttaatcggacaatcttcttatattaaaaataatgatgtcgtaatattcaatga                                                                    <  2:614970‑M1/141‑75 (MQ=255)

                                                                           gacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattat                                                                  <  2:262524‑M1/90‑1 (MQ=255)

                                                                            tACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattatc                                                                 <  1:399042/141‑1 (MQ=255)

                                                                             aCTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattatca                                                                <  2:850424/141‑1 (MQ=255)

                                                                              ccattagggactccaaacccaataaatactgttgttacaacgtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaa                                                               >  1:204053‑M1/49‑141 (MQ=255)

                                                                               tGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaat                                                              <  1:261947/141‑1 (MQ=255)

                                                                                gATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaata                                                             <  1:795495/141‑1 (MQ=255)

                                                                                  tagggactccaaacccaataaatactgttgttacaaggaccctaTGTATCCAAACTGGAGACATTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAAGCTTATAACTTTATCATTATcaataaa                                                           <  2:1027718‑M1/97‑2 (MQ=255)

                                                                                         tccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCat                                                    <  2:609681‑M1/104‑1 (MQ=255)

                                                                                         tccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCat                                                    <  2:609996‑M1/104‑1 (MQ=255)

                                                                                          tagttagtCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCata                                                   <  1:131347/141‑1 (MQ=255)

                                                                                            aaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCCtata                                                 >  2:765724‑M1/35‑141 (MQ=255)

                                                                                            aaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCAtata                                                 <  1:338022‑M1/107‑1 (MQ=255)

                                                                                            aaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTAAtata                                                 <  2:548365‑M1/107‑1 (MQ=255)

                                                                                            aaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATACAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCAtata                                                 >  2:288474‑M1/35‑141 (MQ=255)

                                                                                             aacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATACCTTTATCATTATCAATAATCACTCATataa                                                <  2:876979‑M1/108‑1 (MQ=255)

                                                                                                gtCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataaaat                                             >  2:992717/1‑141 (MQ=255)

                                                                                                  cATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGTCTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTCTAACTTTATCATTATCAATAATACTTAATataaaataa                                           >  2:261212/1‑141 (MQ=255)

                                                                                                    aaaCGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATAtaaaataaaa                                         <  1:242527/140‑1 (MQ=255)

                                                                                                        gTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAtttt                                     >  1:892092/1‑141 (MQ=255)

                                                                                                         actgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAtttta                                    >  2:21192‑M1/22‑141 (MQ=255)

                                                                                                          ctgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttag                                   <  1:983574‑M1/121‑1 (MQ=255)

                                                                                                            gttgttacaaggttcctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttaggg                                 >  1:273673‑M1/19‑141 (MQ=255)

                                                                                                             tatGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATCCCTCATATAAAATAAAAttttaggga                                >  1:327074/1‑141 (MQ=255)

                                                                                                               tGTTATCGACCGTTTTGTATCCAAACTGTAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCAGATAAAATAAAAttttagggact                              <  2:118120/141‑1 (MQ=255)

                                                                                                               tGTTATCGACCGTTTTGTAACCAAACTGGACACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggact                              <  2:1070104/141‑1 (MQ=255)

                                                                                                                gtacaaggtttctaTGTATCCAAACGGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactt                             >  1:56503‑M1/15‑141 (MQ=255)

                                                                                                                gTTATCGACGCTTTTGTATCCCAACTGGAGTCTTTTAACATAAAATTACTTATCATTCAAAAAGAAAAACAGCATAACATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAACTAAAAttttagggactt                             <  1:995994/141‑1 (MQ=255)

                                                                                                                gTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAGCAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactt                             <  1:860162/141‑1 (MQ=255)

                                                                                                                  tATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttt                           <  2:942811/141‑1 (MQ=255)

                                                                                                                    aaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAaattttagggacatttat                         <  1:1078291‑M1/131‑3 (MQ=255)

                                                                                                                        ccGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCACTAATAGCTCAAATAAAATAAACttttggcgatattttaggga                     >  1:227959/1‑141 (MQ=255)

                                                                                                                         cGTTTTGTATCCAAAGTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagggac                    >  1:821263/1‑141 (MQ=255)

                                                                                                                         cGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagggac                    >  2:864456/1‑141 (MQ=255)

                                                                                                                         cGTTTTGTACACAAACTGGAGACTATTAACATCAATTGACAAATCATTCAAATTAAAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagggac                    >  1:809817/1‑141 (MQ=255)

                                                                                                                           ttttGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATtttagggactttttagggactt                  >  2:828373/1‑141 (MQ=255)

                                                                                                                           ttttGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATtttagggactttttagggactt                  >  2:838495/1‑141 (MQ=255)

                                                                                                                              TGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACtttaa               >  1:344612‑M1/1‑141 (MQ=255)

                                                                                                                               gTATCCAAACTGGgggcaatataaacgcgctgatttaatcggacaatcttcttatattaaaaataatgatgtcgtaatattcaatgaagcatttgataatggtgcatcagacaaattattaagtaatgtgaaaaaagaata              <  1:899198‑M1/141‑129 (MQ=255)

                                                                                                                               GTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACtttaaa              <  2:634759‑M1/141‑1 (MQ=255)

                                                                                                                                TATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACtttaaat             <  1:605162‑M1/141‑1 (MQ=255)

                                                                                                                                 ATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACtttaaatt            >  2:165913‑M1/1‑141 (MQ=255)

                                                                                                                                 ATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACtttaaatt            <  2:320590‑M1/141‑1 (MQ=255)

                                                                                                                                 ATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAAGAAAATTTTAGGGACTTTTTAGGGACtttaaatt            <  1:750928‑M1/141‑1 (MQ=255)

                                                                                                                                  TCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACtttaaattt           <  1:1052408‑M1/141‑1 (MQ=255)

                                                                                                                                   CCAATCTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACtttaaattta          >  1:937508‑M1/1‑141 (MQ=255)

                                                                                                                                     AAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACtttaaatttaaa        >  1:14326‑M1/1‑141 (MQ=255)

                                                                                                                                     AAACTGGAGACGTTTAACATAAAATTACTTATAATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCAGTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACtttaaatttaaa        >  2:883188‑M1/1‑141 (MQ=255)

                                                                                                                                       aCTGGgggcaatagaaacgcgctgatttaatcggacaatcttcttatattaaaaataatgatgtcgtaatattcaatgaagcatttgaaaatggtgcatcagacaaattattaagtaatggtaaaaaagcatatccttatc      >  2:75918‑M1/1‑5 (MQ=255)

                                                                                                                                        cTGGgggcaatataaacgcgctgatttaatcggacaatcttcttatattaaaaataatgatgtcgtaatattcaatgaagcatttgataatggtgcatcagacaaattattaagtaatgtgaaaaaagaatatccttatca     >  1:334284‑M1/1‑4 (MQ=255)

                                                                                                                                        cTGGgggcaatataaacgcgctgatttaatcggacaatcttcttatattaaaaataatgatgtcgtaatattcaatgaagcatttgataatggtgcatcagacaaattataaagtaatgtgaaaaaaaaatatccttatca     >  1:532699‑M1/1‑4 (MQ=255)

                                                                                                                                          gggggcaatataaacgcgctgatttaatcggacaatcttcttatattaaaaataatgatgtcgtaatattcaatgaagcatttgataatggtgcatcagacaaattattaagtaatgtgaaaaaagaatatccttatcaaa   >  1:83244‑M1/1‑2 (MQ=255)

                                                                                                                                          GGAGACTTTTAACATAAAATTAATTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATCCCATTTGAGGGACTTTTTAGGGACTTTAAATTTAAAATTAc   >  1:1093657‑M1/1‑141 (MQ=255)

                                                                                                                                           ggggcaatataaacgcgctgatttaatcggacaatcttcttatattaaaaataatgatgtcgtaatattcaatgaagcatttgataatggtgcatcagacaaattattaagtaatgtgaaaaaagaatatccttatcaaac  >  1:444304‑M1/1‑1 (MQ=255)

                                                                                                                                           gagaCTATTAACATAGGAAAGCTTATTATTCAAAAAGTAAATCGGCGTAGAATCAAGGTTGTTAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGAACTTTTTAGGGACTTTAAATTTAAAATTACa  >  2:812720/1‑141 (MQ=255)

                                                                                                                                           GAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGGCTTTAGATTTAAAATTACa  <  1:538157‑M1/141‑1 (MQ=255)

CACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTTAAATTTAAAATTACA  >  USA300TCH1516_ALE/2085170‑2085449

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.