| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,323,313 | A→G | 6.3% | K29E (AAA→GAA) | mutL → | DNA mismatch repair protein MutL |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,323,313 | 0 | A | G | 6.3% | 219.0 / 2.6 | 74 | K29E (AAA→GAA) | mutL | DNA mismatch repair protein MutL |
| Reads supporting (aligned to +/- strand): ref base A (23/46); new base G (3/2); total (26/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.37e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGGCATTGGTGAAGTTAAGTGAATTACAAAATCAATTAAAATAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAATCTATTCGCGTAGTCGATAATGGAAGCGGAATTGAAGCGGAAGACTTAGGATTAGTATTTCATA > USA300TCH1516_ALE/1323173‑1323451 | agtcATTGGTGAAGGTAAGTGAATTACAAAATCAATTAAAATAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAACTAGTTGAAAGACCGAGTTCTGTTGTGa < 2:186731/138‑1 (MQ=255)aGGCATTGGTGAAGTTAAGTGAATTACAAAATCAATTAAAATAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGa < 1:17499/141‑1 (MQ=255) ggCATTGGTGAAGTTAAGTGAATTACAAAATCAATTAAAATAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGGGTTCTGTTGTGaa > 1:376096/1‑141 (MQ=255) ggCATTGGTGAAGTTAAGTGAATTACAAAATCAATGAAAATAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGaa < 1:168369/141‑1 (MQ=255) ggCAGTGGTGAAGTTAAGTGAATTACAAAATCAATTAAAATAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGaa < 1:203054/141‑1 (MQ=255) ttGGTGAAGTTAAGTGAATTACAAAATCAATTAAAATAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGACAGACCGAGTTCTGTTGTGAAAGaa < 1:807693/141‑1 (MQ=255) ttGGTGAAGTTAAGTGAATTACAAAATCAATTAAAATAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGaa < 1:896951/141‑1 (MQ=255) ttGGTGAAGTTAAGTGAATTACAAAATCAATTAAAATAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGaa < 2:461229/141‑1 (MQ=255) tGGTGAAGTTAAGTGAATTACAAAATCAATTAAAATAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAAc > 2:1089172/1‑141 (MQ=255) tGGTGAAGTTAAGTGAATTACAAAATCAATTAAAATAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAAc > 1:658844/1‑141 (MQ=255) tgactttAAGTGAATTCAAAAAAAGATTAAAATAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACCCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGt < 1:469692/136‑1 (MQ=255) tGAAGTTAAGTGAATTACAAAATCAATTAAAATAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGt < 1:283605/141‑1 (MQ=255) ggAAGTTAAGTGAATTACAAAATCAATTAAAATAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGt < 1:919352/140‑1 (MQ=255) gAAGTTAAGTGAATTACAAGATCAATTAAAATAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGtt < 2:671370/141‑1 (MQ=255) gAAGTTAAGTGAATTACAAAATCAATTAAAATAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAATTCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGtt < 2:947474/141‑1 (MQ=255) gAAGTTAAGTGAATTACAAAATCAATTAAAATAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGtt < 2:248465/141‑1 (MQ=255) aaGTTAAGTGAATTACAAAATCAATTAAAAAAAAAAAAAAAAAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTg < 2:357052/141‑1 (MQ=255) aaGTTAAGGGAATGACAAAATCAAATAAACTAGAGGTGTTGCAACCTGGTGATAATGAAAGAGCTCCCAACCTCATTAGCAAATAAAACCGCAGCAGGTGATGTAGTTGAAAGACCTAGTTCTGTTGTGAAAGAACTGTTg < 2:547521/141‑1 (MQ=255) aggtAAGGGAATTACAAAATCAATTAAAATAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTgg < 2:348950/138‑1 (MQ=255) aGTTAAGTGAATTACAAAATCAATTAAAATTGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTgg < 1:277774/141‑1 (MQ=255) aGTTAAGTGAATTACAAAATCAATTAAAATAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTgg < 2:879786/141‑1 (MQ=255) aGTTAAGTGAATTACAAAATCAATTAAAATAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTgg < 2:978271/141‑1 (MQ=255) ggtAAGTGAATTACAAAATCAATTAAAATAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGa < 2:322191/139‑1 (MQ=255) gTTAAGTGAATTACAAAATCAATTAAAATAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGa < 2:568295/141‑1 (MQ=255) aaGTGAATTACAAAATCAATTAAAATAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGaaaa > 2:494064/1‑141 (MQ=255) aaGTGAATTACAAAATCAATTAAAATAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACGGTTGGaaaa > 1:240006/1‑141 (MQ=255) aaGAGAATTACAAAATCAATTAAAATAAAGGTGATGCAGAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATTAAATCGCAGCAGGTGAAGTAGTTGAAAAACCGAGTTCTGTTGTGAAAGACGTGTTGGaaaa > 2:98314/1‑141 (MQ=255) tGAATTACAAAATCAATTAAAATAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGc < 1:772809/141‑1 (MQ=255) aaaTCAATTAAAATAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTCGGAAAAAGCTAAAAATgg > 2:211835/1‑140 (MQ=255) aaTTAAAATAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGgcg < 2:285458/141‑1 (MQ=255) aaTAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAg > 1:1013379/1‑141 (MQ=255) aaTAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAg > 1:1033922/1‑141 (MQ=255) aaTAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAg < 1:541991/141‑1 (MQ=255) gagGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAAt < 2:897155/141‑1 (MQ=255) ggTGTTGAAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATaa < 2:894884/141‑1 (MQ=255) gtTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCa > 1:607927/1‑141 (MQ=255) aaTGGGGAAAATTAAAGCACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGt > 1:265758/1‑141 (MQ=255) aTGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTa > 1:541286/1‑141 (MQ=255) ggAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGGAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAgg > 2:129638/1‑141 (MQ=255) ggAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGGTGAAAGACCGAGTTCTGTTGTGGAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAgg > 2:328086/1‑141 (MQ=255) aacttAAAGCACTCCGAACCCCATTAGCAAATAGAATCTCAGCATGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAAt < 2:484247/138‑1 (MQ=255) tAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTgg < 2:964585/141‑1 (MQ=255) aaGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCg > 1:1019788/1‑141 (MQ=255) aaGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCg > 1:975591/1‑141 (MQ=255) ccAAGCCTCATTACCAAATAAAATCGAAGCAGGGGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGACATAAGAATTGAAGTAGAGGCATCTGGCGTCCAATc > 2:860123/1‑141 (MQ=255) cAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAATCt > 2:298124/1‑141 (MQ=255) cAAACCTCATTAGCAAATAAAAGCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGAGTCCAAtgt > 1:118884/1‑139 (MQ=255) aaCCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACGGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAAAAAGCATTGAAGAAGAGAAAACTGGCGTCCAATCTAt > 2:694508/1‑141 (MQ=255) cgcATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAATCTATTcg < 2:1075320/139‑1 (MQ=255) cTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAATCTATTcg < 1:1089172/141‑1 (MQ=255) cTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAATCTATTcg < 1:984839/141‑1 (MQ=255) cTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAATCTATTcg < 2:658844/141‑1 (MQ=255) ccATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAATCTATTcgc < 1:166470/140‑1 (MQ=255) ttAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAATCTATTCGCGTa < 2:1013379/141‑1 (MQ=255) aaTCGCAGCAGGTGAGGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGTTGCAGGCGCTACAGAGATAAGCATTGAAGTAGATGAATCTGGCGTCCAATCTATTCGCGTAGTCGATGATgg > 2:945407/1‑141 (MQ=255) cagcagGTGAAGTAGCTGAAAGACCGAGTTCTATTATGGAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAATCTATTCGCGTAGTCGATAATGGAAGCg > 1:984477/1‑141 (MQ=255) agcagGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAATCTATTCGCGTAGTTGATAATGGAAGCgg < 1:576384/141‑1 (MQ=255) ggggAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGGTGGAAAATGCTATAGCTGCAGGCGCTACAGAAATAAGTATTGAAGTAGAGGAATCTGGCGTCCAATCTATTCGCGTAGTCGATAATGGAAGCGGAAtt < 2:74114/138‑1 (MQ=255) ggTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAATCTATTCGCGTAGTCGATAATGGAAGCGGAAtt > 2:901462/1‑141 (MQ=255) tGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAATCTATTCGCGTAGTCGATAATGGAAGCGGAATTGa < 1:184870/141‑1 (MQ=255) ggAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAATCTATTCGCGTAGTCGATAATGGAAGCGGAATTGa < 1:834149/140‑1 (MQ=255) taaGTAGGTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAATCTATTCGCGTAGTCGATAATGGAAGCGGAATTGaa < 1:982112/140‑1 (MQ=255) gAAGTAGTTGAAAGACCGAGTTCTGGTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAATCTATTCGCGTAGTCGATAATGGAAGCGGAATTGaa < 1:186901/141‑1 (MQ=255) gAAGTAAGTGAAAGACCCAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATTCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAATCTACTCGCGTAGTCGATAATGGAAGCGGAATTGaa < 2:1054236/141‑1 (MQ=255) gAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATGTATGCAGGCGTTACAGAAATAATCATTGAAGTAGAGGAATCTGGCGTCCAAGCTATTCGCGTATTCGATAATTGAAGCGGAATTGAAGCGGATGAc < 2:388373/141‑1 (MQ=255) gAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAAGCTGGCGTCCAATCTATTCGCGTAGTCGATAATGGAAGCGGAATTGAAGCGGAAGAc < 2:347699/141‑1 (MQ=255) gAAAGACCGAGCACTGTTGTGAAAGAACTGTTGGACATTGGTAGAGATGCTGTGGCTATCGAAATAAGCAGTGAAGTAGATGGAACTTTCGACCAATCTATTCGCGTAGTCGTTTATTGCAGCGGAATTGAAGCGGAAGAc < 2:388222/141‑1 (MQ=255) cGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAATCTATTCGCGTAGTCGATAATGGAAGCGGAATTGAAGCGGAAGACTTAGGAt < 1:34717/141‑1 (MQ=255) cGAGTTCTGTTGGGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAATCTATTCGCGTAGTCGATAATGGAAGCGGAATTGAAGCGGAAGACTTAGGAt < 1:34604/141‑1 (MQ=255) aagtCTGTTGTGAAAGAACGAGTTGAAAATGCTAGAGGTGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAATCTATTCGCGTATTCGATAATGGAAGCGGAATTGAAGCGGAAGACTTAGGATTa < 2:113983/138‑1 (MQ=255) aGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAATCTATTAGCGTAGTCGATAATGGAAGCGGAATTGAAGCGGAAGCCTTAGGATTa > 2:494839/1‑141 (MQ=255) gTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAATCTATTCGCGTAGTCGATAATGGAAGCGGAATTGAAGCGGAAGACTTAGGATTAg < 1:637970/141‑1 (MQ=255) ttCTGTAGTGAAAGAACTGTTGGAAAATGCTATAGATACAGGAGCTACAGAAATAAGCGGTGTGAGAGAGGAATCTTGTGTCCAATCTATTCGCGTAGTGGCAAATGGAAGCGGAATTGGAGCGGAAGACAGAGGATTGGt > 2:396581/1‑141 (MQ=255) tCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAATCTATTCGCGTAGTCGATAATGGAAGCGGAATTGAAGCGGAAGACTTAGGGTTAGTa > 1:589470/1‑141 (MQ=255) tCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAATCTATTCGCGTAGTCGATAATGGAAGCGGAATTGAAGCGGAAGACTTAGGATTAGTa > 1:663954/1‑141 (MQ=255) gtgGAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAATCTATTCGCGTAGTCGATAATGGAAGCGGAATTGAAGCGGAAGACTTAGGATTAGTATTTCAt < 1:328086/141‑1 (MQ=255) gtgGAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAATCTATTCGCGTAGTCGATAATGGAAGCGGAATTGAAGCGGAAGACTTAGGATTAGTATTTCAt < 1:129638/141‑1 (MQ=255) tgAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGTAGTAGAGGAATCTGGCGTCCAATCTATTCGCGTAGTCGATAATGGAAGCGGAATTGAAGCGGAAGAGTTAGGATTAGTATTTCATa < 1:618603/141‑1 (MQ=255) ggAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAATCTATTCGCGTAGTCGATAATGGAAGCGGAATTGAAGCGGAAGACTTAGGATTAGTATTTCATa < 1:313059/140‑1 (MQ=255) | AGGCATTGGTGAAGTTAAGTGAATTACAAAATCAATTAAAATAGAGGTGTTGCAAAATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGTTGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAATCTATTCGCGTAGTCGATAATGGAAGCGGAATTGAAGCGGAAGACTTAGGATTAGTATTTCATA > USA300TCH1516_ALE/1323173‑1323451 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |