BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1380778	115 (1.040)	3 (0.040) +TGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATT	3/174	13.2	4.2%	intergenic (+592/‑300)	opuD_1/acnA	Glycine betaine transporter OpuD/Aconitate hydratase A
*	?	USA300TCH1516_ALE	2830190 =	104 (0.940)		3/174	13.2	4.2%	intergenic (+18/+429)	icaC/lipA_2	putative poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein/Lipase 1
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 116 total aligned reads displayed.

AAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCATTCGCGAAATTGATAATTATTCTCAATTAATAAAAAATACTTATTAC  >  USA300TCH1516_ALE/1380638‑1380918

aaaGTCAGCTTACAATAATGTGCAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAt                                                                                                                                              <  1:758533/141‑1 (MQ=35)

   gTCAGCTTACAATAATGTGCAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCaa                                                                                                                                           >  1:902735/1‑141 (MQ=40)

    tCAGCTTACAATAATGTGCAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCaaa                                                                                                                                          >  4:373159/1‑141 (MQ=40)

       gCTTACAATAATGTGCAAGTTGGGTATGGTCGCCTAGAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGa                                                                                                                                       >  2:176191/1‑141 (MQ=14)

       gCTTACAATAATGTGCAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGa                                                                                                                                       >  2:401302/1‑141 (MQ=255)

               taatGTGCAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACAtt                                                                                                                               >  1:50918/1‑141 (MQ=255)

               taatGTGCAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACAtt                                                                                                                               >  3:121250/1‑141 (MQ=255)

                      cAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGaaaaaa                                                                                                                        >  1:12306/1‑141 (MQ=255)

                      cAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGaaaaaa                                                                                                                        >  1:729129/1‑141 (MQ=255)

                             gggATGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGCAATAAATTTTGCGACAATATAATTTCTGTCTCACTCCCATCAAAAGAATGACATTGAAAAAAATATTaa                                                                                                                 >  1:770058/1‑141 (MQ=255)

                             gggATGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTaa                                                                                                                 >  4:12667/1‑141 (MQ=255)

                             gggATGGGCCAAAACAAAGAGAAATTGGATTACCAATGTTTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATAACATTGAAAAAAATATTaa                                                                                                                 <  2:771292/141‑1 (MQ=17)

                             ggcaTGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAACATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTaa                                                                                                                 >  4:1332/4‑141 (MQ=255)

                               gcccatccccAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAg                                                                                                               >  3:187350/7‑141 (MQ=255)

                                aTGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGt                                                                                                              >  1:234674/1‑141 (MQ=255)

                                  gggCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGttt                                                                                                            >  1:400117/1‑141 (MQ=255)

                                     ccccAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGt                                                                                                         <  1:894372/141‑1 (MQ=255)

                                        caacaaAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGcc                                                                                                      <  3:75455/141‑1 (MQ=255)

                                           caaAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATa                                                                                                   <  1:124973/141‑1 (MQ=255)

                                            aaaGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATaa                                                                                                  >  1:677198/1‑141 (MQ=255)

                                             aaGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAAt                                                                                                 >  2:699877/1‑141 (MQ=255)

                                              agagAAATTGGATTCCCAATTTCTACAGCCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAATAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATaact                                                                                                >  2:715599/1‑139 (MQ=255)

                                              agagAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAAtt                                                                                                <  4:201273/141‑1 (MQ=255)

                                               gagaAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAAGATTAAAGTTGGGTGCCAAAAttt                                                                                               >  1:422520/1‑141 (MQ=255)

                                               gagaAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAAttt                                                                                               >  2:67912/1‑141 (MQ=255)

                                               gagaAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAAttt                                                                                               <  1:584537/141‑1 (MQ=255)

                                               gagaAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAAAAAATGGTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAAttt                                                                                               >  3:203482/1‑141 (MQ=255)

                                                 gaAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATtttc                                                                                             <  1:520182/141‑1 (MQ=255)

                                                    aTTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATtttcttt                                                                                          >  1:402086/1‑141 (MQ=255)

                                                     ttGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAGTTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATtttctttc                                                                                         >  1:463387/1‑141 (MQ=255)

                                                     ttGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATtttctttc                                                                                         >  1:251459/1‑141 (MQ=255)

                                                      tGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTttctttct                                                                                        >  1:277231/1‑141 (MQ=255)

                                                       ggATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTg                                                                                       >  1:789169/1‑141 (MQ=255)

                                                       ggATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCACACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTg                                                                                       >  1:435121/1‑141 (MQ=255)

                                                        ggttCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGAGGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGc                                                                                      <  2:785137/139‑1 (MQ=255)

                                                        gATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGc                                                                                      <  3:235089/141‑1 (MQ=255)

                                                        gATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGc                                                                                      <  1:389915/141‑1 (MQ=255)

                                                         aTTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCt                                                                                     >  2:616820/1‑141 (MQ=255)

                                                          aatccAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTc                                                                                    >  1:111330/4‑141 (MQ=255)

                                                            cccAATTTCTACAGACAATGCAAGTTGAGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCaa                                                                                  >  3:187060/1‑141 (MQ=255)

                                                             ccAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAAt                                                                                 <  1:159750/141‑1 (MQ=255)

                                                             ccAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAAt                                                                                 >  2:555847/1‑141 (MQ=255)

                                                              cAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAAta                                                                                >  2:823019/1‑140 (MQ=255)

                                                                aTTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGaa                                                                              >  3:73692/1‑141 (MQ=255)

                                                                 tttCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGaaa                                                                             >  4:242616/1‑141 (MQ=255)

                                                                    cTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAaataa                                                                          >  1:306514/1‑141 (MQ=255)

                                                                      aCAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAataata                                                                        <  1:276572/141‑1 (MQ=255)

                                                                       cAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATGATAc                                                                       >  2:429101/1‑141 (MQ=255)

                                                                       cAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATAc                                                                       >  1:421581/1‑141 (MQ=255)

                                                                       cAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATAc                                                                       >  2:240269/1‑141 (MQ=255)

                                                                       cAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATAc                                                                       >  3:290276/1‑141 (MQ=255)

                                                                         gACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGt                                                                     <  2:532145/141‑1 (MQ=255)

                                                                            aaTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTa                                                                  <  1:270933/141‑1 (MQ=255)

                                                                             aTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTaa                                                                 >  1:307826/1‑141 (MQ=255)

                                                                             aTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTaa                                                                 <  1:490278/141‑1 (MQ=255)

                                                                                cAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTaaaaa                                                              >  4:55960/1‑141 (MQ=255)

                                                                                 aaGTTGGGGTGGGCCGACGAAATAAATTTTGCGAAAAAATCATTTCTGTCCCACTCCCATCAAAAGAATGACAAAAAAAAAAATATTAAAGTTTGGTGTCATAATTTTCTTTCTGCTCAAAGAAATAATACGTTTatcaat                                                             <  2:613352/141‑6 (MQ=25)

                                                                                 aaGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAaat                                                             <  3:81978/141‑1 (MQ=255)

                                                                                 aaGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAaat                                                             >  1:754104/1‑141 (MQ=255)

                                                                                  aGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAaatt                                                            >  2:153265/1‑141 (MQ=255)

                                                                                  aGTTGGGGTGGGACGACGAAATAAAGTCTGCGAAAATATCCTTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTCGGTGCCATAATTTTCTTTCTGCTCAATGAAAGAAGACGTTTAAAaatt                                                            >  4:162062/1‑141 (MQ=37)

                                                                                   gTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAaattg                                                           >  2:832269/1‑141 (MQ=255)

                                                                                   gTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAaattg                                                           >  2:190946/1‑141 (MQ=255)

                                                                                   gTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAaattg                                                           >  1:424232/1‑141 (MQ=255)

                                                                                    ttGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAaattga                                                          >  1:686643/1‑141 (MQ=255)

                                                                                     tGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAaattgaa                                                         >  1:550145/1‑141 (MQ=255)

                                                                                       gggTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAaattgaatt                                                       >  2:170800/1‑141 (MQ=255)

                                                                                        ggTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAaattgaattg                                                      <  2:768116/141‑1 (MQ=255)

                                                                                             gacgacGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCa                                                 <  4:182522/141‑1 (MQ=255)

                                                                                             gacgacGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCa                                                 <  1:378644/141‑1 (MQ=255)

                                                                                             gacgacGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCa                                                 <  3:373159/141‑1 (MQ=255)

                                                                                              acgacgAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAAAGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCAt                                                <  2:800905/141‑1 (MQ=255)

                                                                                                   gaAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCATTcgcg                                           <  4:40404/141‑1 (MQ=255)

                                                                                                       taaatTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCATTCGCGAAAt                                       >  1:702019/1‑141 (MQ=255)

                                                                                                         aatTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCATTCGCGAAATTg                                     >  1:290711/1‑141 (MQ=255)

                                                                                                             ttGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCATTCGCGAAATTGATaa                                 <  4:63991/141‑1 (MQ=255)

                                                                                                             ttGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCATTCGCGAAATTGATaa                                 >  1:735497/1‑141 (MQ=255)

                                                                                                              tGCGAAAATATCATTTCTGTCCCACTCACACCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAACTAATACGTTTAAAAATTGAATTGAATCATTCGCGAAATTGATAat                                >  2:271960/1‑141 (MQ=255)

                                                                                                               gCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCATTCGCGAAATTGATAatt                               <  1:616820/141‑1 (MQ=255)

                                                                                                                cGAAAATATCATTTCTGTCCCACTCCAATCAAAAGAAAAAAAAAAAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCATTCGCGAAATTGATAatta                              <  2:135984/141‑1 (MQ=255)

                                                                                                                   aaaTATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCATTCGCGAAATTGATAATTATtc                           >  1:801420/1‑141 (MQ=255)

                                                                                                                     atatCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAGAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCATTCGCGAAATTGATAATTATtctc                         <  2:902735/141‑1 (MQ=255)

                                                                                                                        tCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAaataat                                                                         <  3:107587/90‑1 (MQ=255)

                                                                                                                        tCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAaataat                                                                         >  4:107587/1‑90 (MQ=255)

                                                                                                                          aTTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCATTCGCGAAATTGATAATTATTCTCAATta                    >  2:27275/1‑141 (MQ=255)

                                                                                                                          aTTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCATTCGCGAAATTGATAATTATTCTCAATta                    >  1:547269/1‑141 (MQ=255)

                                                                                                                           tttCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCATTCGCGAAATTGATAATTATTCTCAATtaa                   <  1:555847/141‑1 (MQ=255)

                                                                                                                              cTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCATTCGCGAAATTGATAATTATTCTCAATtaataa                <  1:597372/141‑1 (MQ=255)

                                                                                                                              cTGTCCCACTCCCATCAAAAGAATGACAATGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCATTCGCGAAATTGATAATTATTCTCAATtaataa                <  2:49067/141‑1 (MQ=255)

                                                                                                                                 tCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCATTCGCGAAATTGATAATTATTCTCAATTAATaaaaa             >  2:376162/1‑141 (MQ=255)

                                                                                                                                   ccACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCATTCGCGAAATTGATAATTATTCTCAATTAATAAAAAAt           <  3:47723/141‑1 (MQ=255)

                                                                                                                                   ccACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCATTCGCGAAATTGATAATTATTCTCAATTAATAAAAAAt           >  4:220747/1‑141 (MQ=255)

                                                                                                                                    cACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCATTCGCGAAATTGATAATTATTCTCAATTAATAAAAAATa          <  2:754104/141‑1 (MQ=255)

                                                                                                                                     aCTACCATAAAAAAAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCATTCGCGAAATAGATAATTATTCTCAATTAATAAAAAATAc         <  1:757087/141‑1 (MQ=255)

                                                                                                                                      cTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCATTCGCGAAATTGATAATTATTCTCAATTAATAAAAAATACt        <  1:187123/141‑1 (MQ=255)

                                                                                                                                          cATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCATTCGCGAAATTGATAATTATTCTCAATTAATAAAAAATACttatt    >  1:640243/1‑141 (MQ=255)

                                                                                                                                          cATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCATTCGCGAAATTGATAATTATTCTCAATTAATAAAAAATACttatt    >  1:182771/1‑141 (MQ=255)

                                                                                                                                            tCAAAAGAATTACATTGAAAAAAAAATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCATTCGCGAACTTGATAATTATTCAAAAAAAAAAAAAAATACTTATTac  <  2:12306/141‑1 (MQ=255)

                                                                                                                                            tCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCATTCGCGAAATTGATAATTATTCTCAATTAATAAAAAATACTTATTac  <  2:234674/141‑1 (MQ=255)

                                                                                                                                            tCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCATTCGCGAAATTGATAATTATTCTCAATTAATAAAAAATACTTATTac  <  1:21047/141‑1 (MQ=255)

AAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATCAAAAGAATGACATTGAAAAAAATATTAAAGTTTGGTGCCATAATTTTCTTTCTGCTCAATGAAATAATACGTTTAAAAATTGAATTGAATCATTCGCGAAATTGATAATTATTCTCAATTAATAAAAAATACTTATTAC  >  USA300TCH1516_ALE/1380638‑1380918

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.