New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1205323	100 (0.900)	53 (0.660) +AGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAG	14/200	8.0	42.2%	intergenic (‑204/‑365)	USA300HOU_RS15290/lspA	hypothetical protein/Lipoprotein signal peptidase
	?	USA300TCH1516_ALE	= 1443739	NA (NA)					intergenic (‑312/+41)	USA300TCH1516_01342/brnQ_3	hypothetical protein/Branched‑chain amino acid transport system 2 carrier protein
Rejected: Coverage evenness skew score above cutoff.

AGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAACCACTCTAAAG  >  USA300TCH1516_ALE/1443621‑1443877                                                                                                                       |                                                                                                                                           aGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCaa                                                                                                                      <  3:37492/141‑1 (MQ=11)   tCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAAcc                                                                                                                    <  2:352349/141‑1 (MQ=32)   tCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAAcc                                                                                                                    >  3:80827/1‑141 (MQ=32)       aGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGACGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAANCTCtt                                                                                                                >  1:317097/1‑141 (MQ=21)       aGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCtt                                                                                                                >  2:134258/1‑141 (MQ=35)        gACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCttt                                                                                                               >  2:813529/1‑141 (MQ=34)         aCCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCtttt                                                                                                              <  2:147847/141‑1 (MQ=35)          ccGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTta                                                                                                             >  2:300562/1‑141 (MQ=35)          ccGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTta                                                                                                             >  2:252776/1‑141 (MQ=35)            gAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTtata                                                                                                           >  1:620721/1‑141 (MQ=35)              ggCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTAtatt                                                                                                         >  1:211260/1‑141 (MQ=37)                cTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTAtattat                                                                                                       <  3:388443/141‑1 (MQ=38)                  gagaCGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTc                                                                                                     <  1:454570/141‑1 (MQ=40)                   agaCGGCACCCTAGGAAAGCTAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCg                                                                                                    <  3:82376/141‑1 (MQ=255)                   agaCGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCg                                                                                                    <  1:170414/141‑1 (MQ=40)                     aCGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGtt                                                                                                  <  1:819571/141‑1 (MQ=255)                     aCGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGtt                                                                                                  <  2:375856/141‑1 (MQ=255)                      cGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTTAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTa                                                                                                 <  2:811420/141‑1 (MQ=255)                        gCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTAtt                                                                                               >  1:18570/1‑141 (MQ=255)                           cccTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATGATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCt                                                                                            <  2:406540/141‑1 (MQ=255)                              tAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGtt                                                                                         <  4:4295/141‑1 (MQ=255)                                ggAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGa                                                                                       >  4:280431/1‑141 (MQ=255)                                ggAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCACAACCTCTTTTATATTATTCGTTATTCCTGTTGa                                                                                       >  2:221627/1‑141 (MQ=255)                                  aaaGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGata                                                                                     >  1:497621/1‑141 (MQ=255)                                    aGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATAtt                                                                                   >  2:673380/1‑141 (MQ=255)                                         aGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAAtt                                                                              >  2:530201/1‑141 (MQ=255)                                         aGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAAtt                                                                              <  4:295864/141‑1 (MQ=255)                                          gCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTg                                                                             >  4:2902/1‑141 (MQ=255)                                            cATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGa                                                                           <  4:68698/141‑1 (MQ=255)                                               tCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCt                                                                        >  4:163394/1‑141 (MQ=255)                                               tCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCt                                                                        <  3:18541/141‑1 (MQ=255)                                                 aaTACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTg                                                                      >  3:366886/1‑141 (MQ=255)                                                    aCGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGttt                                                                   <  1:843926/141‑1 (MQ=255)                                                       aaGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTAc                                                                <  4:21778/141‑1 (MQ=255)                                                          tATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACaaa                                                             <  3:257011/141‑1 (MQ=255)                                                               tataAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGc                                                        <  2:205513/141‑1 (MQ=255)                                                                        agaACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGAt                                               >  1:496210/1‑141 (MQ=255)                                                                        agaACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGAt                                               >  3:381049/1‑141 (MQ=255)                                                                          aaCAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAg                                             >  2:68837/1‑141 (MQ=255)                                                                           aCAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGc                                            >  1:715483/1‑141 (MQ=255)                                                                             atcagTAAGATATTTTCTTATTGAAAATTATCTTACTGCTGTTTTTTTGGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTGTTCCTGTTGATATTTAATTGTATCTTGTTTTACATATATGCCGACTAGATAGCCt                                          <  2:674647/139‑1 (MQ=25)                                                                              gcagTAATATATTTTCTACTTGCATATTATCTTACTGCTTTTTTTTTAGGGTGTTATGTCCCAACCTCTTTTATATTATTCGTTTTTCTTGTTGATATTTAAGTCGATCTTGTTTTACAAATATGCCGACTAGATAGACTa                                         <  2:412405/141‑1 (MQ=37)                                                                              gcagTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTa                                         <  2:664933/141‑1 (MQ=255)                                                                              gcagTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTa                                         <  2:9271/141‑1 (MQ=255)                                                                                agTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAat                                       <  3:386122/141‑1 (MQ=255)                                                                                   aaGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATc                                    >  3:149364/1‑141 (MQ=255)                                                                                     gATATTTTCTGATTTAATAGTATCTTAGTTGTGGTTTTTGATGGAGTTATTTCCGAACCTCTTTTGTATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGt                                  <  3:275655/141‑1 (MQ=255)                                                                                     gATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGt                                  <  2:466035/141‑1 (MQ=255)                                                                                      atatTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGtt                                 >  1:432713/1‑141 (MQ=255)                                                                                        atTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTTTTTTTTTTTTTCCCAACCTCTTTTATATTATTTGTTATTCCTGTTGATATTTTATTGTATCTTTTTTTACATATATTATAACTATATAACCTTatattttttt                               >  2:180368/1‑135 (MQ=16)                                                                                        atTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGc                               >  2:774932/1‑141 (MQ=255)                                                                                        atTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGc                               >  2:224690/1‑141 (MQ=255)                                                                                          tttCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCaa                             <  1:193904/141‑1 (MQ=255)                                                                                          tttCAAATTGAGACTTCTCTTACCGCTGTTTTTCTAGGGATTTAGGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCaa                             <  3:132960/141‑1 (MQ=255)                                                                                           ttCTAATTGAAAATTATCTTACTGCTGTTTTTTTTTTTTTTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCaat                            >  2:615886/1‑141 (MQ=38)                                                                                           ttCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCaat                            >  2:696773/1‑141 (MQ=255)                                                                                           ttCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACCAGATGGCCTAATATCGTTGCaat                            >  3:299095/1‑141 (MQ=255)                                                                                            tCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCATTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCaata                           <  3:51781/141‑1 (MQ=255)                                                                                             cTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTCTGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCaataa                          <  4:346955/141‑1 (MQ=255)                                                                                              tAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCaataat                         <  3:94174/141‑1 (MQ=255)                                                                                              tAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCaataat                         <  3:94487/141‑1 (MQ=255)                                                                                              tAATTGAAAATTATCTTACTGCTGTCTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCaataat                         >  1:667286/1‑141 (MQ=255)                                                                                               aaTTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTATAAATATGCCTACTAGATAGCCTAATATCGTTTCAATAAtt                        >  4:342275/1‑141 (MQ=255)                                                                                               aaTTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAAtt                        <  4:247078/141‑1 (MQ=255)                                                                                                  tGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTGCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCt                     >  4:170745/1‑141 (MQ=255)                                                                                                    aaaaTTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTAc                   <  2:582475/141‑1 (MQ=255)                                                                                                     aaaTTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACt                  >  2:858298/1‑141 (MQ=255)                                                                                                        ttATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTggg               <  4:221341/141‑1 (MQ=255)                                                                                                          aTCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGaa             >  2:380415/1‑141 (MQ=255)                                                                                                           tCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAAc            <  2:134483/141‑1 (MQ=255)                                                                                                           tCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAAc            <  1:500145/141‑1 (MQ=255)                                                                                                           tCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAAc            <  1:487637/141‑1 (MQ=255)                                                                                                           tCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAAc            <  2:419566/141‑1 (MQ=255)                                                                                                           tCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAAc            >  1:891172/1‑141 (MQ=255)                                                                                                           tCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAAc            <  3:269850/141‑1 (MQ=255)                                                                                                             ttACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAACCa          >  1:907762/1‑141 (MQ=255)                                                                                                                     gTTTTTATATGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAACCACTCTAAAg  <  1:312087/141‑1 (MQ=255)                                                                                                                       |                                                                                                                                           AGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAACCACTCTAAAG  >  USA300TCH1516_ALE/1443621‑1443877

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.