BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1205323	100 (0.900)	53 (0.660) +AGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAG	14/200	8.0	41.3%	intergenic (‑204/‑365)	USA300HOU_RS15290/lspA	hypothetical protein/Lipoprotein signal peptidase
*	?	USA300TCH1516_ALE	2478252 =	108 (0.970)	53 (0.660) +AGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAG	14/200	8.0	41.3%	intergenic (+139/‑436)	USA300HOU_RS12760/USA300HOU_RS12765	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 108 total aligned reads displayed.

TCCACAAACAAACTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGT  >  USA300TCH1516_ALE/2478114‑2478391

tCCACAAACAAACTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAAc                                                                                                                                           >  4:9835/1‑141 (MQ=255)

tCCACAAACAAACTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAAc                                                                                                                                           >  1:205147/1‑141 (MQ=255)

tCCACAAACAAACTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAAc                                                                                                                                           >  2:263651/1‑141 (MQ=255)

    caaacaaaCTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAACCTAAAGCGTCTGGGACATTAATCCCT‑AAAAAAAAcagca                                                                                                                                       >  1:710842/1‑141 (MQ=255)

       acaaacTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTa                                                                                                                                    <  4:348653/141‑1 (MQ=255)

          aacTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGa                                                                                                                                 <  1:825189/141‑1 (MQ=255)

           acTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGAt                                                                                                                                >  2:659278/1‑141 (MQ=255)

           acTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGAt                                                                                                                                >  2:348990/1‑141 (MQ=255)

            cTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATa                                                                                                                               >  2:504476/1‑141 (MQ=255)

             tattattatAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATaa                                                                                                                              <  3:235801/141‑1 (MQ=255)

              attattatAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAAt                                                                                                                             >  1:203964/1‑141 (MQ=255)

              attattatAGGTTGTTTCTAATATAGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAAt                                                                                                                             >  2:768610/1‑141 (MQ=255)

                  ttatAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTc                                                                                                                         >  3:384123/1‑141 (MQ=255)

                      aGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAAtt                                                                                                                     >  4:290977/1‑141 (MQ=255)

                          tgttTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGaa                                                                                                                 <  2:623869/141‑1 (MQ=255)

                          tgttTCTAATATTGCGTCAAACTATCATTAAATATTCGTTAAACCATGATTAGACAAGTGTTATAGTGAAAATAAATAAACTCCAGTGACTGGGACATAAATCCAT‑AAAAAAAACAGCAGTATGGTAATTTTCAGTTAGaa                                                                                                                 <  2:102453/141‑1 (MQ=255)

                          tgtgTCTAAGATTGCGTCAAAGTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTAAATTGAAAAGAAATAAACGAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGaa                                                                                                                 <  2:314134/141‑1 (MQ=38)

                             ttCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAat                                                                                                              <  1:14847/141‑1 (MQ=255)

                                 aaTATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCt                                                                                                          >  4:36849/1‑141 (MQ=255)

                                 aaTATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCt                                                                                                          >  4:325510/1‑141 (MQ=255)

                                  atatTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCtt                                                                                                         >  1:824080/1‑141 (MQ=255)

                                    atTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTAc                                                                                                       >  3:169014/1‑141 (MQ=255)

                                       gCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTActgc                                                                                                    >  4:100297/1‑141 (MQ=255)

                                         gTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTCctgatg                                                                                                  >  4:329836/1‑141 (MQ=255)

                                          tCAAACTATCTTTAAATATTGATTAAACCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGTGAAAAAAAAAAAA‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGt                                                                                                 <  2:661302/141‑1 (MQ=25)

                                          tCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGt                                                                                                 >  4:379663/1‑141 (MQ=255)

                                           cAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGtt                                                                                                <  3:103666/141‑1 (MQ=255)

                                                  tCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTAtt                                                                                         <  4:197424/141‑1 (MQ=255)

                                                  tCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTAtt                                                                                         >  2:319485/1‑141 (MQ=255)

                                                    tttAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTta                                                                                       >  2:172176/1‑141 (MQ=255)

                                                      tAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTtata                                                                                     >  3:221198/1‑141 (MQ=255)

                                                        aataatCGTAAAACCTTTATAAGACAATTGTTATATTGAAAAAAAATAAACTAAAGATTCTGTGACATTAAAAAAA‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACa                                                                                   <  2:281278/141‑1 (MQ=18)

                                                             tCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACt                                                                              >  1:329334/1‑141 (MQ=255)

                                                             tCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACt                                                                              >  3:20329/1‑141 (MQ=255)

                                                              cGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAAAACAA‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACtt                                                                             <  4:59076/141‑1 (MQ=255)

                                                               gTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTc                                                                            <  1:211542/141‑1 (MQ=255)

                                                                     ccTTGATTAGACAATTNTTATATTGAAAANAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAAGATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTg                                                                      >  1:850790/1‑141 (MQ=255)

                                                                       ttGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGAAGTAAAATAATTGTCAATTAGACAATATCTTCCGGCTGTTCTCTAATTATACACTACTTCGTATTgta                                                                    <  2:319913/141‑3 (MQ=255)

                                                                        tGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAAt                                                                   >  4:350923/1‑141 (MQ=255)

                                                                        tGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAAt                                                                   >  4:350954/1‑141 (MQ=255)

                                                                        tGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAAt                                                                   <  2:363326/141‑1 (MQ=255)

                                                                           ttAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGc                                                                >  2:35018/1‑141 (MQ=255)

                                                                           ttAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGc                                                                >  2:679176/1‑141 (MQ=255)

                                                                            tAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCt                                                               <  1:602753/141‑1 (MQ=255)

                                                                             aGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCtt                                                              >  1:576337/1‑141 (MQ=255)

                                                                              gACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTc                                                             <  1:884432/141‑1 (MQ=255)

                                                                                cAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCg                                                            >  2:481044/1‑141 (MQ=255)

                                                                                           ttGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCt                                                <  2:96762/141‑1 (MQ=255)

                                                                                             gAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTgg                                              <  1:185246/141‑1 (MQ=255)

                                                                                             gAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTgg                                              <  1:182796/141‑1 (MQ=255)

                                                                                               aaataaatAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGca                                            >  2:886594/1‑141 (MQ=255)

                                                                                               aaataaatAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGca                                            <  3:290977/141‑1 (MQ=255)

                                                                                               aaataaatAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGca                                            >  2:834822/1‑141 (MQ=255)

                                                                                                   aaataaaCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACAtt                                        <  3:258960/141‑1 (MQ=255)

                                                                                                   aaataaaCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACAtt                                        <  2:470/141‑1 (MQ=255)

                                                                                                   aaataaaCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACAtt                                        >  2:826992/1‑141 (MQ=255)

                                                                                                     ataaaCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTAc                                      >  2:569080/1‑141 (MQ=255)

                                                                                                     ataaaCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAAAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCTCATCTGGCACATTAc                                      >  4:384875/1‑141 (MQ=255)

                                                                                                       aaaCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCATTTAGATAATATCTTAATGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCTATCTGGCACATTACTg                                    >  4:6655/1‑141 (MQ=255)

                                                                                                        aaCTATAGAGTTTGAGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGTTATGCCCATCTGGCACATTACTGt                                   <  2:371558/141‑1 (MQ=255)

                                                                                                        aaCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGt                                   <  2:612131/141‑1 (MQ=255)

                                                                                                         aCTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTa                                  >  3:355056/1‑141 (MQ=255)

                                                                                                          cTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTaa                                 <  1:348990/141‑1 (MQ=255)

                                                                                                          cTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTaa                                 >  2:662328/1‑141 (MQ=255)

                                                                                                            aaaGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATCCAAGACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTaaaa                               <  1:440137/141‑1 (MQ=255)

                                                                                                            aaaGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTaaaa                               <  1:179774/141‑1 (MQ=255)

                                                                                                            aaaGAGTCTGGGACATTAATACATAAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTaaa                                <  4:72985/141‑1 (MQ=255)

                                                                                                             aaGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAAt                              >  4:60572/1‑141 (MQ=255)

                                                                                                             aaGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAAt                              >  4:135054/1‑141 (MQ=255)

                                                                                                              agagTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAAtt                             >  1:392709/1‑141 (MQ=255)

                                                                                                              agagTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAAtt                             >  4:199224/1‑141 (MQ=255)

                                                                                                              agagTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCCTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAAtt                             <  3:325510/141‑1 (MQ=255)

                                                                                                               gagTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTCTACAATa                                                                                <  1:723673/89‑1 (MQ=255)

                                                                                                               gagTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATa                                                                                >  2:723673/1‑89 (MQ=255)

                                                                                                               gagTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAGTTc                            >  2:813087/1‑141 (MQ=255)

                                                                                                               gagTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTc                            >  1:189117/1‑141 (MQ=255)

                                                                                                               gagTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTc                            >  2:871724/1‑141 (MQ=255)

                                                                                                               gagTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTc                            >  1:396571/1‑141 (MQ=255)

                                                                                                                agTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCt                           >  1:208006/1‑141 (MQ=255)

                                                                                                                 gTCTTGGACATCAATCTCT‑AAAAAAAACAGCAGTAAGATAATTTTCAAGTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCta                          <  2:77919/141‑1 (MQ=255)

                                                                                                                 gTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGCATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCta                          >  1:491795/1‑141 (MQ=255)

                                                                                                                   cTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCtata                        <  3:360503/141‑1 (MQ=255)

                                                                                                                     gggACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATaaa                      >  3:92756/1‑141 (MQ=255)

                                                                                                                     gggACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATaaa                      <  2:609009/141‑1 (MQ=255)

                                                                                                                      ggACATTAATCCCT‑AAAAAAAACAGTCATAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCtatttat                     <  2:412071/141‑5 (MQ=255)

                                                                                                                      ggACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAAt                     <  1:262309/141‑1 (MQ=255)

                                                                                                                       gACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATa                    >  3:5723/1‑141 (MQ=255)

                                                                                                                         cATTAATCCCTAAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCtatttatag                   <  1:481044/141‑7 (MQ=255)

                                                                                                                             aaTCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATTAATAGAAttt              >  3:13074/1‑141 (MQ=255)

                                                                                                                             aaTCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATTGAAttt              >  2:35748/1‑141 (MQ=255)

                                                                                                                             aaTCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAAttt              <  4:386808/141‑1 (MQ=255)

                                                                                                                             aaTCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAAttt              >  1:806836/1‑141 (MQ=255)

                                                                                                                                cccT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTtg           >  2:36580/1‑141 (MQ=255)

                                                                                                                                 ccT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTtga          <  2:199160/141‑1 (MQ=255)

                                                                                                                                   t‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTtgatg        >  1:471434/1‑141 (MQ=38)

                                                                                                                                       aaaaaaCAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACCTTACTGTAAAATTCTATAAATAGAATTTTTGATGACg     <  1:662328/141‑1 (MQ=255)

                                                                                                                                       aaaaaaCAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACg     <  1:400762/141‑1 (MQ=39)

                                                                                                                                       aaaaaaCAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACg     >  2:400762/1‑141 (MQ=37)

                                                                                                                                        aaaaaCAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACgg    <  1:679176/141‑1 (MQ=39)

                                                                                                                                          aaaCAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGt  <  4:8160/141‑1 (MQ=38)

TCCACAAACAAACTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCT‑AAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGT  >  USA300TCH1516_ALE/2478114‑2478391

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.