BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2830190 =	104 (0.940)	3 (0.040) +AATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAAT	3/170	13.0	4.0%	intergenic (+18/+429)	icaC/lipA_2	putative poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein/Lipase 1
*	?	USA300TCH1516_ALE	2866774 =	129 (1.160)		3/170	13.0	4.0%	intergenic (‑173/+280)	USA300HOU_RS14695/noc_2	hypothetical protein/Nucleoid occlusion protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 129 total aligned reads displayed.

AAAACGTATCATTCACACAAAGTGTAAAACTTAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATA  >  USA300TCH1516_ALE/2866635‑2866912

aaaaCGTATCATTCACACAAAGTGTAAAACTTAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAgg                                                                                                                                           >  2:147982/1‑141 (MQ=255)

aaaaCGTATCATTCACACAAAGTGTAAAACTTAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAgg                                                                                                                                           >  2:325109/1‑141 (MQ=255)

 aaaCGTATCATTCACACAAAGTGTAAAACTTAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAggg                                                                                                                                          >  1:643914/1‑141 (MQ=255)

 aaaCGTATCATTCACACAAAGTGTAAAACTTAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAggg                                                                                                                                          >  3:339080/1‑141 (MQ=255)

     gTATCATTCACACAAAGCGTAAAACTTAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTg                                                                                                                                      >  4:239973/1‑141 (MQ=255)

      tATCATTCACACAAAGTGTAAAACTTAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTgg                                                                                                                                     <  1:718162/141‑1 (MQ=255)

       aTCATTCACACAAAGTGTAAAACTTAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTggg                                                                                                                                    >  2:35357/1‑141 (MQ=255)

        tCATTCACACAAAGTGTAAAACTTAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGa                                                                                                                                   <  2:781064/141‑1 (MQ=255)

           ttCACACAAAGTGTAAAACTTAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAg                                                                                                                                >  4:239090/1‑141 (MQ=255)

            tCACACAAAGTGTAAAACTTAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGa                                                                                                                               >  2:72643/1‑141 (MQ=255)

                acaAAGTGTAAAACTTAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATg                                                                                                                           >  4:51721/1‑141 (MQ=255)

                  aaaGTGTAAAACTTAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGat                                                                                                                         >  4:124158/1‑141 (MQ=255)

                  aaaGTGTAAAACTTAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGat                                                                                                                         >  1:848559/1‑141 (MQ=255)

                    aGTGTAAAACTTAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGatat                                                                                                                       >  4:24309/1‑141 (MQ=255)

                       gtAAAACTTAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGCTACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAGTGATGtttt                                                                                                                    >  3:95251/1‑141 (MQ=255)

                         aaaaCTTAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCg                                                                                                                  >  2:358926/1‑141 (MQ=255)

                         aaaaCTTAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCg                                                                                                                  >  1:790522/1‑141 (MQ=255)

                            acgtAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCaa                                                                                                               <  2:176996/138‑1 (MQ=255)

                               tAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAat                                                                                                            <  1:110644/141‑1 (MQ=255)

                                aaaTTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAatt                                                                                                           >  2:157929/1‑141 (MQ=255)

                                 aaTTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAattt                                                                                                          >  1:705861/1‑141 (MQ=255)

                                  aTTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAattta                                                                                                         >  2:481725/1‑141 (MQ=255)

                                  aTTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAattta                                                                                                         >  3:109831/1‑141 (MQ=255)

                                   ttttCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAatttat                                                                                                        <  1:101801/141‑1 (MQ=255)

                                      tCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTtc                                                                                                     >  2:826130/1‑141 (MQ=255)

                                       cTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAGGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTtcg                                                                                                    >  1:825905/1‑141 (MQ=255)

                                       cTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTtcg                                                                                                    >  2:437195/1‑141 (MQ=255)

                                         aCTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTtcgtc                                                                                                  >  1:699182/1‑141 (MQ=255)

                                           tGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTGTTTcgtcgt                                                                                                <  1:804734/141‑1 (MQ=255)

                                           tGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTcgtcgt                                                                                                <  1:622163/141‑1 (MQ=255)

                                                    aaCTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCa                                                                                       >  2:384803/1‑141 (MQ=255)

                                                    aaCTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGAAATAAAGGGTTCAAATGAAAGTCTATTTAACTTAAATAAAGGAGTCGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCa                                                                                       >  3:76078/1‑141 (MQ=25)

                                                     aCTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTCGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAg                                                                                      >  2:773795/1‑141 (MQ=255)

                                                     aCTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAg                                                                                      <  1:740112/141‑1 (MQ=255)

                                                     aCTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAg                                                                                      >  1:20974/1‑141 (MQ=255)

                                                     aCTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAg                                                                                      >  2:2218/1‑141 (MQ=255)

                                                       tCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCa                                                                                    <  1:419726/141‑1 (MQ=255)

                                                        cAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCaa                                                                                   <  1:116175/141‑1 (MQ=255)

                                                         aaGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAg                                                                                  >  1:705599/1‑141 (MQ=255)

                                                         aaGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAg                                                                                  >  1:808551/1‑141 (MQ=255)

                                                           gCGATGTTCATAAAGCTTTCATTATACTTTCAGAAGCTAGTGATTGATGTTTCAATGGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGt                                                                                <  3:232429/141‑1 (MQ=21)

                                                           gCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGt                                                                                <  2:623846/141‑1 (MQ=255)

                                                           gCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGt                                                                                >  1:243310/1‑141 (MQ=255)

                                                           gCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGt                                                                                >  2:137668/1‑141 (MQ=255)

                                                             gATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTg                                                                              <  1:255815/141‑1 (MQ=255)

                                                               tGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGAc                                                                            >  1:869209/1‑141 (MQ=255)

                                                               tGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGAc                                                                            <  4:333986/141‑1 (MQ=255)

                                                                 ttCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTa                                                                          <  1:572232/141‑1 (MQ=255)

                                                                  tCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAg                                                                         >  1:375262/1‑141 (MQ=255)

                                                                   cATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGa                                                                        >  2:111359/1‑141 (MQ=255)

                                                                    aTAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGaa                                                                       <  3:196405/141‑1 (MQ=255)

                                                                     tAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTAAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCCAGGTTGACTAGAAt                                                                      >  4:193752/1‑141 (MQ=255)

                                                                        aGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGa                                                                   <  3:109029/141‑1 (MQ=255)

                                                                         gCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGaa                                                                  <  1:553828/141‑1 (MQ=255)

                                                                           tttCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGaaaa                                                                <  1:893651/141‑1 (MQ=255)

                                                                           tttCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGaaaa                                                                <  1:484747/141‑1 (MQ=255)

                                                                            ttCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGaaaaa                                                               <  1:329311/141‑1 (MQ=255)

                                                                             tCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGaaaaaa                                                              >  2:673010/1‑141 (MQ=255)

                                                                             tCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGaaaaaa                                                              >  1:287255/1‑141 (MQ=255)

                                                                              cATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAg                                                             >  1:176168/1‑141 (MQ=255)

                                                                               aTGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGc                                                            <  1:257741/141‑1 (MQ=255)

                                                                                tGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCt                                                           >  1:108840/1‑141 (MQ=255)

                                                                                      tttCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTAc                                                     <  2:215353/141‑1 (MQ=255)

                                                                                       ttCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACa                                                    <  1:372826/141‑1 (MQ=255)

                                                                                              aCTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAt                                             <  1:742687/141‑1 (MQ=255)

                                                                                               cTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAtt                                            >  2:432684/1‑141 (MQ=255)

                                                                                               cTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAtt                                            >  1:603850/1‑141 (MQ=255)

                                                                                               cTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAtt                                            >  1:604205/1‑141 (MQ=255)

                                                                                               cTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAtt                                            >  2:758472/1‑141 (MQ=255)

                                                                                                 aGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAtttt                                          <  1:507921/141‑1 (MQ=255)

                                                                                                  gCAATAAAGGGTTCAAATGAAAGTATATCCGGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTc                                         >  2:728718/1‑141 (MQ=255)

                                                                                                  gCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTc                                         <  2:373551/141‑1 (MQ=255)

                                                                                                   cAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCg                                        >  1:449702/1‑141 (MQ=255)

                                                                                                   cAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCg                                        >  1:664539/1‑141 (MQ=255)

                                                                                                    taaaaaGGGTTCAAATGAAAGTATATCCAGCGCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGt                                       <  4:209987/138‑1 (MQ=255)

                                                                                                    aaTAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGt                                       >  4:173834/1‑141 (MQ=255)

                                                                                                         aGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGt                                  >  2:381104/1‑141 (MQ=255)

                                                                                                          gggTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTc                                 >  1:570418/1‑141 (MQ=255)

                                                                                                          gggTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTc                                 <  2:665007/141‑1 (MQ=255)

                                                                                                          gggTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTc                                 <  3:308366/141‑1 (MQ=255)

                                                                                                          gggTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTc                                 <  2:287646/141‑1 (MQ=255)

                                                                                                             ttCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAac                              <  1:539140/141‑1 (MQ=255)

                                                                                                             ttCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAac                              >  2:836091/1‑141 (MQ=255)

                                                                                                              tCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAact                             <  1:599983/141‑1 (MQ=255)

                                                                                                               cAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCCCCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAacta                            <  3:24309/141‑1 (MQ=255)

                                                                                                                      aaGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCaa                     >  2:131046/1‑141 (MQ=255)

                                                                                                                         tataTCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAatat                  >  2:692707/1‑141 (MQ=255)

                                                                                                                         tataTCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAatat                  <  3:73982/141‑1 (MQ=255)

                                                                                                                            atCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAAc               <  1:705400/141‑1 (MQ=255)

                                                                                                                            atCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAAc               <  1:35357/141‑1 (MQ=255)

                                                                                                                             tCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTGGTCCCAGACCAGCAAGGATGGCTAGAATAGAAGAAAGCTTGTGACAAGCGCATTTTCGTTCAGTCAACTGCTGCCAATATAACt              >  3:333246/1‑141 (MQ=17)

                                                                                                                             tCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACt              >  3:30158/1‑141 (MQ=255)

                                                                                                                                aGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCg           <  1:387430/141‑1 (MQ=255)

                                                                                                                                      aaTTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATTACTTCGTAGAGc     >  2:180235/1‑141 (MQ=255)

                                                                                                                                      aaTTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGc     >  2:243195/1‑141 (MQ=255)

                                                                                                                                       aTTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCa    <  1:21521/141‑1 (MQ=255)

                                                                                                                                       aTTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCa    >  2:303178/1‑141 (MQ=255)

                                                                                                                                       aTTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCa    >  2:696498/1‑141 (MQ=255)

                                                                                                                                         tAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATa  >  1:205824/1‑141 (MQ=255)

                                                                                                                                         tAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGAAAAAAAAAAAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATa  <  4:330151/141‑1 (MQ=14)

AAAACGTATCATTCACACAAAGTGTAAAACTTAAATTTTCTACTGTAAAGGCAACTCAAGCGATGTTCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATA  >  USA300TCH1516_ALE/2866635‑2866912

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.