New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 = 19921135 (0.890)9 (0.010) 5/248 NT 0.85% intergenic (+225/+101) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein
?NC_012417 = 2020 1027 (0.840)intergenic (+253/+73) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

TTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/1847‑1992
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaatgGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATC  <  NC_012417/2020‑1881
                                                                                                                                                                                                                                                                                              
ttcTGTTTTTTTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAC                                                                                                                                                   <  1:94825/138‑1
TTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAC                                                                                                                                                   <  1:376434/141‑1
TTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAC                                                                                                                                                   >  2:197199/1‑141
TTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAC                                                                                                                                                   >  2:220712/1‑141
TTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAC                                                                                                                                                   <  1:887832/141‑1
TTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAC                                                                                                                                                   <  2:824151/141‑1
TTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAC                                                                                                                                                   <  1:458839/141‑1
TTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAC                                                                                                                                                   <  1:630315/141‑1
TTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAC                                                                                                                                                   <  1:40533/141‑1
TTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAC                                                                                                                                                   <  2:881501/141‑1
TTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAC                                                                                                                                                   >  1:717130/1‑141
TTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAC                                                                                                                                                   >  1:130704/1‑141
TTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAC                                                                                                                                                   >  1:320458/1‑141
TTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAC                                                                                                                                                   <  1:200039/141‑1
TTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGAAGGAAGAAAAAGATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAC                                                                                                                                                   <  1:65570/141‑1
TTTTGTTTTTATATACAGATGATGTTTTTCACGAGATAGAAGAACAATATCATTATCATGAAGATAATAAAAAATAGACTACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAC                                                                                                                                                   <  2:648670/141‑1
TTTTGTTTGTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAC                                                                                                                                                   <  2:311167/141‑1
 ttgGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATCCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACG                                                                                                                                                  <  2:453139/138‑1
 TTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAACATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACG                                                                                                                                                  <  1:648957/141‑1
 TTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACG                                                                                                                                                  <  1:364607/141‑1
 TTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACG                                                                                                                                                  <  2:341639/141‑1
 TTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACG                                                                                                                                                  <  1:211216/141‑1
 TTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACG                                                                                                                                                  <  2:845932/141‑1
 TTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACG                                                                                                                                                  <  1:803252/141‑1
 TTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACG                                                                                                                                                  <  2:505844/141‑1
 TTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAACAACCCTTAACTAAACTTGCAGACG                                                                                                                                                  <  1:687868/141‑1
 TTTGTTTTTCTATAAAGATGATGCTTTGGACGGGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACG                                                                                                                                                  <  1:137248/141‑1
  cTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGCTTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTTAGAAGAACCCTTAACTAAACTTGCATACGA                                                                                                                                                 <  2:574024/140‑1
  TTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGA                                                                                                                                                 <  2:575266/141‑1
  TTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGA                                                                                                                                                 >  1:17117/1‑141
  TTGTTTTTCTATAAAGATGATGATTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGA                                                                                                                                                 <  1:255703/141‑1
  TTGTTTTTCTATAAAGAAGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGA                                                                                                                                                 <  1:764445/141‑1
  TTGTTTATCTATAAGGATGATGCTTTTGACGAGATGGAAGAAAAATATAATTATCATGAAGATAATAAAGATGGGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGA                                                                                                                                                 <  2:102622/141‑1
  TTGGTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGA                                                                                                                                                 <  1:300992/141‑1
   TGTTTTTTTTTTAAGATGAAGCTTTTGACGAGATGGAAGAAAATTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATTCTTTGTTAATTTATTCATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAA                                                                                                                                                >  2:436801/1‑141
   TGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCCGACatt                                                                                                                                                <  1:385281/141‑4
   TGTTTTTCTATAAAGATGATGCTTGTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTGATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAA                                                                                                                                                <  1:65650/141‑1
    tTTTTTTTTTAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATCGACGACGCATTTTTGTCGTTTATATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAAT                                                                                                                                               >  2:581295/2‑141
    tTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACTACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAAT                                                                                                                                               <  2:842883/140‑1
    ggTTTTCTATAAAGATGATGCGTTTGACGAGATGGAAGAAAAATATAATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCTGAGAAAATTTATTGATGTTGAGAAGAACGCTTAACTGAACTTGCAGACCAAT                                                                                                                                               >  2:456530/3‑141
    GTTTTTTTATAAAGATGATGCTTTTGAATAGATGGAAGAAAAAGATGATTATCATGAAGATAAGAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTATACTTGCCGACattc                                                                                                                                               <  2:647449/141‑5
    GTTTTTCTATAAAGATGATGCTTTTGACGAGATGGCAGAAAAATATGATTATCAGGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAAT                                                                                                                                               >  1:453216/1‑141
    GTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAAT                                                                                                                                               >  1:786184/1‑141
    GTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAAT                                                                                                                                               <  2:310984/141‑1
    GTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAAT                                                                                                                                               >  1:848555/1‑141
    GTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAACCGAAT                                                                                                                                               >  2:701979/1‑141
    GTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACACTTAACTAAACTTGAAGACGAAT                                                                                                                                               >  2:499784/1‑141
    GTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTAATGTTGAGAAGAAGCCTTAACTAAACTTGCAGACGAAT                                                                                                                                               >  2:653150/1‑141
    GTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAAATAATAAAAAATAGACAAGGCATATAAACCAAAAAAATTTATTGATGTTGACACGAATCCTTAACTAAACATGCAAACGAAa                                                                                                                                               >  2:383163/1‑140
     TTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAGATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG                                                                                                                                              >  1:615241/1‑141
     TTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG                                                                                                                                              <  2:650556/141‑1
     TTTTACTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG                                                                                                                                              >  1:642142/1‑141
       TTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTGAACTTGAAGACGAATttc                                                                                                                                            >  1:633401/1‑138
                          TTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAAT‑GTCGGCTTAATAGCTCACGCTA                                                                                                                        <  2:727428/141‑1
                          TTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAAT‑GTCGGCTTAATAGCTCACGCTA                                                                                                                        <  1:521445/141‑1
                            ttACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTAGGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAAT‑GTCGGCTTAATAGCTCACGCTATG                                                                                                                      <  2:538108/139‑1
                            TGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCTGACGAAT‑GTCGGCTTAATAGCTCACGCTATG                                                                                                                      <  2:159751/141‑1
                              ACGAGATTGAAGAAAAAGATGATTATCATGAATATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGCTGCACCCTGAACTAAACTT‑‑‑GTCTAATGGTCGGCTTAATAGCTCACGCTATGCCGA                                                                                                                  <  1:366725/141‑1
                               aGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGGTCGGCTTAATAGCTCACGCTATGCC                                                                                                                    <  2:698587/140‑1
                                             AATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTT‑‑‑GTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT                                                                                                   <  2:637360/141‑1
                                                ATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGT                                                                                                   <  2:773739/141‑1
                                                                    tacgcATAGAC‑ACGCATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAA                                                                              <  1:870318/136‑1
                                                                                                                                   aaaagttGACGAATGGGCGCAATGATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTGTTTTTTATTATCTTCATGATAATCAT                >  2:426027/8‑141
                                                                                                                                       cttgttcAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTT            <  2:38946/134‑1
                                                                                                                                            CGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATTATAATCATATTTTTCTT       >  1:613024/1‑141
                                                                                                                                            CGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTT       <  2:938061/141‑1
                                                                                                                                            CGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGGCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTT       <  2:186110/141‑1
                                                                                                                                            CGAATGGTCGGCCTAATAGCTCACGCCATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTT       <  1:8987/141‑1
                                                                                                                                             ttATGGTCGGCATTATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTC      <  2:899328/139‑1
                                                                                                                                             gacTGGTCGGCTTAATAGTCCATGATAGCGCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTC      <  2:946723/138‑1
                                                                                                                                             GAATGGTCGGCTTAATAGCTCACGCTATGCCGATATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTC      <  1:371238/141‑1
                                                                                                                                             GAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTt      >  2:56783/1‑140
                                                                                                                                             GAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTC      <  2:939935/141‑1
                                                                                                                                             GAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTC      <  1:48905/141‑1
                                                                                                                                             GAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTC      <  2:275101/141‑1
                                                                                                                                             GAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTC      <  2:154054/141‑1
                                                                                                                                             GAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAAGGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTC      <  2:40055/141‑1
                                                                                                                                             GAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAACTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTC      <  2:697762/141‑1
                                                                                                                                              AATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTACGGGTTCGTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCC     >  1:410182/1‑141
                                                                                                                                              AATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCC     >  2:371321/1‑141
                                                                                                                                              AATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATCCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTATTCC     >  1:384395/1‑141
                                                                                                                                              AATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATAAATAAATTTTCTCGGCATAAATGCGTGGTCTATTTTTTATTATCTACATGTTAATCATATTTTTCTTtc     >  1:495370/1‑139
                                                                                                                                               ATGGTCGGCTTAATAGCTCATGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAACTCAGTCGTTTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCA    <  2:708412/141‑1
                                                                                                                                               ATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTTTTTTTTATTTTTTTCATGATGATAATATTTTTTTTCCA    >  2:743049/1‑141
                                                                                                                                               ATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCA    <  1:540317/141‑1
                                                                                                                                                TGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCAT   <  1:198883/141‑1
                                                                                                                                                 GGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGTGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATC  <  2:924674/141‑1
                                                                                                                                                 GGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATC  <  1:389326/141‑1
                                                                                                                                                 GGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATC  <  1:554918/141‑1
                                                                                                                                                 GGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATC  <  1:635392/141‑1
                                                                                                                                                 GGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATC  <  1:761214/141‑1
                                                                                                                                                 GGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATC  <  1:803012/141‑1
                                                                                                                                                 GGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATC  <  2:329178/141‑1
                                                                                                                                                 GGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATC  <  2:557240/141‑1
                                                                                                                                                 GGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATC  <  2:378162/141‑1
                                                                                                                                                 GGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCGTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTGCATGATAATCATATTTTTCTTCCATC  >  1:575978/1‑141
                                                                                                                                                 GGTCGGCTTAATAGCTCACCCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATC  <  2:157258/141‑1
                                                                                                                                                 GGTCGGCTTAATACCTCACGCAATGCCGACAATCGTCCACAGGTTTAGGGAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATC  <  1:257787/141‑1
                                                                                                                                                                                                                                                                                              
TTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/1847‑1992
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaatgGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATC  <  NC_012417/2020‑1881

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.