BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 1954	1074 (0.840)	11 (0.010)	10/244	NT	1.1%	intergenic (+187/+139)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
*	?	NC_012417	= 2064	917 (0.760)	11 (0.010)	10/244	NT	1.1%	intergenic (+297/+29)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1410 total aligned reads displayed.

GTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCT  >  NC_012417/1814‑2094

 tttttttCTTCCTATTGGTGGTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCTTGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGAt                                                                                                                                             >  1:591002/1‑141 (MQ=255)

     tttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTg                                                                                                                                         <  1:267906/141‑1 (MQ=255)

     tttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAAAAAAAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTg                                                                                                                                         <  2:880869/141‑1 (MQ=255)

      ttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATCGACGACGCATTTATGCCGAGACAATTTATTGATGTTga                                                                                                                                        <  1:524539/141‑1 (MQ=255)

       tATTCATATTGTTGGTTTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTgag                                                                                                                                       <  2:805604/141‑1 (MQ=255)

        aTTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGACGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTgaga                                                                                                                                      <  1:626455/141‑1 (MQ=255)

         ttCCTATTGGGTTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaa                                                                                                                                     <  1:874786/141‑1 (MQ=255)

          tCCTATTGGTGTTTTTGTTTACTTTTTTTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaag                                                                                                                                    <  1:312586/141‑1 (MQ=255)

           ccTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTTTTAAGTTGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCTGAGAAAATTTATTGATGTTGagaaga                                                                                                                                   >  2:745739/1‑141 (MQ=255)

           ccTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaaga                                                                                                                                   <  2:917967/141‑1 (MQ=255)

            ttATGGGTGGTGTTGCTTACGTTTTGTTTTTCGATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAgaagaa                                                                                                                                  <  2:413659/140‑1 (MQ=255)

                tGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGACATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACTAAGCCTTTATGACGAGAAAATTTATTGATGTTGAGAAGAAcccc                                                                                                                              >  2:219926/1‑140 (MQ=255)

                 ggTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCtt                                                                                                                             <  2:155723/141‑1 (MQ=255)

                  gtgtTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTa                                                                                                                            >  2:627412/1‑141 (MQ=255)

                   tgttgtTGCTTACTGTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTaa                                                                                                                           <  2:390699/141‑1 (MQ=255)

                     ttgttgCTTACTTTTAGATTGTCTATAAAAATGATGCGTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACt                                                                                                                         >  1:896133/1‑141 (MQ=38)

                          gCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTaaaat                                                                                                                    >  1:246987/1‑139 (MQ=255)

                           cTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATCAGAAAAAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACtt                                                                                                                   >  1:927884/1‑141 (MQ=255)

                           cTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAAAAGAACCCTTAACTAAAcct                                                                                                                   >  2:125101/1‑139 (MQ=255)

                             tACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGc                                                                                                                 <  2:840593/141‑1 (MQ=255)

                                 ttttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAgcc                                                                                                             >  1:743049/1‑139 (MQ=255)

                                 ttttGTTTTTCTATAAAGATGATGCTTTTGACGAGAAGGAAGAAAAAGATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAC                                                                                                             <  1:65570‑M1/141‑1 (MQ=255)

                                  tttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAACAACCCTTAACTAAACTTGCAGACG                                                                                                            <  1:687868‑M1/141‑1 (MQ=255)

                                     gTTTTTTTATAAAGATGATGCTTTTGAATAGATGGAAGAAAAAGATGATTATCATGAAGATAAGAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTATACTTGCCGACattc                                                                                                         <  2:647449‑M1/141‑5 (MQ=255)

                                     gTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAAT                                                                                                         >  1:848555‑M1/1‑141 (MQ=255)

                                        tttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTGGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTc                                                                                                      >  2:510158/1‑141 (MQ=255)

                                         tttttttaaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAACATAGACGACGCATTTTTTTCTATAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCg                                                                                                     >  2:698936/8‑141 (MQ=25)

                                          tCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCgg                                                                                                    >  2:139573/1‑141 (MQ=255)

                                           cTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGc                                                                                                   >  1:101133/1‑141 (MQ=255)

                                           cTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGc                                                                                                   <  2:188972/141‑1 (MQ=255)

                                           cTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTAGCAGACGAATGTCGGc                                                                                                   <  1:467205/141‑1 (MQ=255)

                                            tataAAGGTGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCa                                                                                                  <  2:239289/141‑1 (MQ=255)

                                              taAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATa                                                                                                >  1:188205/1‑141 (MQ=255)

                                              taAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTACGCGTAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATa                                                                                                <  1:834756/141‑1 (MQ=255)

                                               aaaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATaa                                                                                               >  2:730172/1‑140 (MQ=255)

                                               aaaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAg                                                                                               >  1:413242/1‑141 (MQ=255)

                                                aagaagATGCTTTTGACGAGATGGAAAAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGc                                                                                              <  1:175366/141‑1 (MQ=255)

                                                aaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGc                                                                                              <  1:945162/141‑1 (MQ=255)

                                                    tgatgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAAGAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGa                                                                                          >  2:430696/1‑141 (MQ=255)

                                                      atgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGc                                                                                        <  2:33697/141‑1 (MQ=255)

                                                        gCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTa                                                                                      <  1:428696/141‑1 (MQ=255)

                                                        gCTTTGGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTa                                                                                      <  2:166110/141‑1 (MQ=255)

                                                        gCTTTAGACGAGATGCATCAAATTTATAATTATGATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTa                                                                                      <  1:400989/141‑1 (MQ=18)

                                                         cTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGGCGGCATAGCGagaggcat                                                                                     >  2:85326/1‑137 (MQ=255)

                                                         cTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGAAGCATTTATGCCGAGAAAAATTATGGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAAGGTCGGCATACGGTGAGTTAt                                                                                     >  2:71534/1‑141 (MQ=25)

                                                          ttttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAtt                                                                                    >  1:672223/1‑141 (MQ=255)

                                                          ttttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCAAGAAAATTTATTGATGTTGAGAAAAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAtt                                                                                    >  1:728121/1‑141 (MQ=255)

                                                           tttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGACGAACCCTTTAGTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTa                                                                                   >  1:638997/1‑141 (MQ=255)

                                                           tttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTa                                                                                   >  1:788797/1‑141 (MQ=255)

                                                              gACGAGATGGAAGAAAAATATTATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGc                                                                                <  2:895487/141‑1 (MQ=255)

                                                               aCGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGcg                                                                               >  1:608943/1‑140 (MQ=255)

                                                                 gagaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGa                                                                             >  1:202105/1‑141 (MQ=255)

                                                                       gaagaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCCTTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACcattc                                                                       <  2:40055‑M2/141‑6 (MQ=255)

                                                                         agaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                                                                     <  2:683811/141‑1 (MQ=255)

                                                                         agaaAAATAAGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                                                                     <  2:543935/141‑1 (MQ=255)

                                                                          gaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAc                                                                    <  2:593201/141‑1 (MQ=255)

                                                                          gaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAc                                                                    >  1:280817/1‑141 (MQ=255)

                                                                          gaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAc                                                                    >  1:296302/1‑141 (MQ=255)

                                                                          gaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAc                                                                    >  2:662868/1‑141 (MQ=255)

                                                                            aaaaTATGATTAGCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACaa                                                                  <  1:23267/141‑1 (MQ=255)

                                                                               atatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAggt                                                               >  1:327383/1‑139 (MQ=255)

                                                                               atatGATTATCATGAAGATAATAAAAAATAGACGACGAATTTCTGCCGAGAAAATTTATTGATGTAGAGAAGAACCCTTAATTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtt                                                               >  2:932034/1‑141 (MQ=255)

                                                                                 atGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtttt                                                             <  1:496435/141‑1 (MQ=255)

                                                                                  tGATTATCATGAAGATAATAAAAAATAGAAGACGAATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCCACCATTCGCCAAGTATTg                                                            >  1:134506/1‑141 (MQ=17)

                                                                                   gATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAACGTGAGCTATTAAGCCGACCATTCGACAAGGTTTgg                                                           >  1:70324/1‑141 (MQ=255)

                                                                                    aTTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTggg                                                          <  2:530740/141‑1 (MQ=255)

                                                                                    aTTATCATGAAGATAATAAAAAATAGACGACGCAGTTATTCCGAGAAAATTTATTGATGTTGAGAACAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTggg                                                          <  1:381258/141‑1 (MQ=255)

                                                                                     ttATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCCATCATTCGACAAGTTTTGGGa                                                         <  2:203830/141‑1 (MQ=255)

                                                                                     ttATCATGAAGATAATAAAAAATAGACGACGCATTTATGCAGAGAAAATTTATTGAcgttgagccccggaccccttaacaatcccaaaacttgtcgaatgatcggcttcatagctcacgctatgccgacattcgtctcgca                                                         >  2:3183‑M1/1‑56 (MQ=255)

                                                                                             aaGATAATAAAAAATATACTACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAg                                                 <  1:34236/141‑1 (MQ=255)

                                                                                             aaGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAg                                                 >  1:159576/1‑141 (MQ=255)

                                                                                             aaGATAATAAAAAATAGACCACGAATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAg                                                 <  2:281124/141‑1 (MQ=255)

                                                                                              aGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAgg                                                <  2:357596/141‑1 (MQ=255)

                                                                                                 taataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGAACATTCGACAAGTTTTGGGATTGTTAAGGGtt                                             >  2:373025/1‑141 (MQ=255)

                                                                                                  aataaAAAATAGCCGACGCAGTTGTGCCGAGAAAATTTATAGATGTTGGGAAGAACCCTTAACTAAGCTTGGGGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACGATTCAAAGAGCTTTGGGGTGGTTAAAGGttg                                            >  2:259663/1‑140 (MQ=14)

                                                                                                   ataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTcc                                           >  1:481316/1‑141 (MQ=255)

                                                                                                    taaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCg                                          <  2:819587/141‑1 (MQ=255)

                                                                                                    taaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCACCCATTAATTTTTTTTGCCGACAACTCGACGTGTTTTGGGATTGTTAAGGGTTCCg                                          >  1:213936/1‑141 (MQ=14)

                                                                                                     aaaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTCTTAAGCCGACCATTCTACAAGTTTTGGGCTTGTTAAGGCTTCCGa                                         >  2:453864/1‑141 (MQ=255)

                                                                                                      aaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTATGGGATTGTTAAGGGTTCCGAg                                        <  1:112229/141‑1 (MQ=255)

                                                                                                       aaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAgg                                       >  1:75858/1‑141 (MQ=40)

                                                                                                        aaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGc                                      <  2:770097/141‑1 (MQ=38)

                                                                                                          acaGACGACGTAGTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTc                                    <  2:1079/139‑1 (MQ=19)

                                                                                                           tAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCa                                   >  2:864403/1‑141 (MQ=38)

                                                                                                               cgacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGt                               >  1:912846‑M2/1‑140 (MQ=255)

                                                                                                                  cgCATTTATGCCGAGAAAATCTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGTCCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGtcaa                            >  1:546659‑M2/1‑137 (MQ=255)

                                                                                                                    cATTTATGCCGAGAAAATTTATTGAcgttgagcctcggaacccttaacaatcccaaaacttgtcgaatggtcggcttaatagctcacgctatgccgacattcgtctgcaagtttagttaagggttcttctcaacatcaata                          <  1:886183‑M1/141‑117 (MQ=255)

                                                                                                                     aTTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAGCTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGCCAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGtcaaaaa                         <  2:608898‑M2/141‑8 (MQ=255)

                                                                                                                     aTTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGtcattaa                         <  1:819472‑M2/141‑8 (MQ=255)

                                                                                                                       ttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGtcaatgaag                       >  2:49534‑M2/1‑132 (MQ=255)

                                                                                                                       ttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAg                       <  2:307970/141‑1 (MQ=32)

                                                                                                                         ttGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCa                     <  2:577924/140‑1 (MQ=17)

                                                                                                                         aTGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCGACGTCAATAAAGCa                     >  1:453707/1‑141 (MQ=17)

                                                                                                                         aTGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCa                     <  2:47975/141‑1 (MQ=32)

                                                                                                                         aTGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTGAAGGGTTCCGAGGCTCAACGTCAATAAAGCa                     <  1:367029/141‑1 (MQ=17)

                                                                                                                           gCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACTAATGTCGGCATAGCGGGAGCTATTAGGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAAt                   <  2:786184/141‑1 (MQ=12)

                                                                                                                              gagaAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTgg                <  1:775069/141‑1 (MQ=32)

                                                                                                                                gaAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGAAATTGGaa              >  2:561088/1‑141 (MQ=11)

                                                                                                                                           gAcgttgagcctcggaacccttaacaatcccaaaacttgtcgaatggtcggcttaatagctcacgctatgccgacattcgtctgcaagtttagttaagggttcttctcaacatcaataaattttctcggcataaatgcgtc   <  1:802934‑M1/141‑140 (MQ=255)

                                                                                                                                            acgttgagcctcggaacccttaacaatcccaaaacttgtcgaatggtcggcttaatagctcacgctatgccgacattcgtctgcaagtttagttaagggttcttctcaacatcaataaattttctcggcataaatgcgtcg  >  1:5739‑M1/1‑1 (MQ=255)

GTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCT  >  NC_012417/1814‑2094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.