| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,231,446 | C→T | 6.6% | Q31* (CAA→TAA) | stp → | Serine/threonine phosphatase stp |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,231,446 | 0 | C | T | 6.6% | 202.3 / 2.2 | 69 | Q31* (CAA→TAA) | stp | Serine/threonine phosphatase stp |
| Reads supporting (aligned to +/- strand): ref base C (33/30); new base T (2/3); total (36/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.68e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGTCAATTAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGTTTTGAAGCGGAAAATCTTATAGAACAACATCAAGCTGAAAATTGGTTGCGT > USA300TCH1516_ALE/1231308‑1231583 | ggTCAATTAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTGTTTATAATCAAACTAATcaacca > 1:118181/1‑139 (MQ=255) cAATTAAGAGCAAAGGAACGACAAGTAGGAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACtt < 2:658791/141‑1 (MQ=255) aGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCtgtgtg < 1:863496/141‑1 (MQ=255) aCGACAAGTAGATACGAGGTAAAGACAAATGCTAGAGGCACAAGTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATACTCAAACTAATCAACAGCCTTCAGTTCTGCGTGAtag < 2:790344/141‑3 (MQ=255) aCGACAAGTAGAAACGAGGTAAAGACAAATACTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAACCACCCTAATCATCAACCTTTAGTCCTGTGTGATgg < 2:85848/141‑1 (MQ=255) aaCAAGAAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTa < 2:232004/140‑1 (MQ=255) aggaGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAATAACTTTTAGTTCTGTGTGATGGTAt < 2:231647/138‑1 (MQ=255) aaaaGTAGAAACCGGGTAAAGACAAATGCTAGAGGCACAATTTTTTACGGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTTGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTAt < 2:31981/139‑1 (MQ=255) aCAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTAt > 1:208187/1‑141 (MQ=255) aCAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATAAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTAt > 2:116114/1‑141 (MQ=255) aCAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGAAACTGTACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTAt < 1:26727/141‑1 (MQ=255) cAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAATAACTTTTAGTTCTGTGTGATGGTATg < 2:870968/141‑1 (MQ=255) cAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATg > 2:282117/1‑141 (MQ=255) cAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATg > 1:392580/1‑141 (MQ=255) cAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCCGTGTGATGGTATg > 1:766846/1‑141 (MQ=255) cAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAAATTTTAGTTCTGTGTGATGGTATg > 2:425447/1‑141 (MQ=255) cAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAAAAGAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATg > 2:287129/1‑141 (MQ=255) cAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATGTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGAAGCGGGTGGTATTTTTTATAATCAAACTAATAANCAANTNTTAGTCTTGTGTGATGGTATg > 1:486228/1‑141 (MQ=255) cAAGTAGAAACGAGCTAAAGACAAATGCTAGCGGCCCAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAATAACTTTTAGTTCTGTGTGATGGTATg < 2:867881/141‑1 (MQ=255) gTAGAAACGGGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGt < 2:143985/141‑1 (MQ=255) gTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGt < 2:567734/141‑1 (MQ=255) aGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTgg < 1:781462/141‑1 (MQ=255) gAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGc > 1:552862/1‑141 (MQ=255) gAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGc > 1:372698/1‑141 (MQ=255) gAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTGTTAGTTCTGTGTGATGGTATGGGTGGc > 1:403299/1‑141 (MQ=255) ggTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGATATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAg > 1:202900/1‑141 (MQ=255) ggTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGAATGGGTGGCCATaaac > 2:284948/1‑140 (MQ=255) gTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGc < 1:322265/141‑1 (MQ=255) aaaGACAAATGCTATAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTAGCCATAAAGCAg < 1:606125/141‑1 (MQ=255) aaaGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAg > 1:43822/1‑141 (MQ=255) gACAAATGCTAGCGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGgag < 2:479314/141‑1 (MQ=255) gACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGgag < 2:641979/141‑1 (MQ=255) cTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCa > 2:470547/1‑141 (MQ=255) cTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCa < 2:678433/141‑1 (MQ=255) cTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTAGGGGTGGCCATAAATCAGGAGAAGTTGcg > 1:195954/1‑140 (MQ=255) agagGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAg < 2:43822/141‑1 (MQ=255) cacaATTTTTTACTGATACTGGACAACATAGAGATCAGACTGACGAAAAGGGCGGTATTCTTTCTACTCAAAATAATAGAAGATAATCACGTTTGCGCAGTGGCACGGGTGCCCATAAAGCATGATAAGGTGCAAGTAAAt > 2:315396/1‑141 (MQ=255) cacaATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAAt > 1:79735/1‑141 (MQ=255) caATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAAttt > 1:177733/1‑141 (MQ=255) ttttACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCGTAAAGCAGGAGAAGTTGCAAGTAAATTTTTTAc > 1:436399/1‑141 (MQ=255) ttACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAAGCAAACTAATCAACAACTTGTAGTTCTGTGTGATGGTAGGGGTGGCCATAAAGCGGGAGAAGTTGCCAGTAAATTTGTTACAg > 1:902276/1‑141 (MQ=255) aCTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGATATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGAt < 2:675182/141‑1 (MQ=255) cTGATACTGGACAACATAGAGATAAGCATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTACATAAACGTAAAGGTATGGGAGGCCAGAAAGCAGGAGAAGTTACAAGTAAATTTGTTACAGATg > 1:926276/1‑141 (MQ=255) aTACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAAATAATCAACAACTGTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGt < 2:335669/141‑1 (MQ=255) tgcTGTACAACATAGAGATAAGAATGAAGATGCGGGTGGTA‑TTTTTATAATCAAACTAATGAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTg < 2:231848/139‑1 (MQ=255) acaacaTAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCCGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGACATc > 1:206823/1‑141 (MQ=255) acaacaTAGAGATAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATc > 1:41336/1‑141 (MQ=255) aacaTAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGTGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATccc > 1:264043/1‑141 (MQ=255) aTAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTTATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGtt > 1:151463/1‑141 (MQ=255) aTAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTATTAGTTCTGTGTTATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTCAATTTGTTACAGATGAGTTGAAATCCCgct > 1:724845/1‑139 (MQ=255) gagaTAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAATAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGTTTTg > 1:300826/1‑141 (MQ=255) gagaTAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAATAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGTTTTg > 1:74564/1‑141 (MQ=255) gagaTAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGCGAGGTATTAAAGCAGGATAAGTTGCAAGAAAACTTGTTACAGATGCGTTGAAATCCCGTTTTg < 2:429967/141‑1 (MQ=255) agaaGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAACCACCAACTTTTAGTTGTGTGTGATGGTATGGGTGGCCAGAAAGCAGGAGAAGTTGCAAGTAAATTTGGTACAGAGGAGTTGAGATCCCTTGTTTAAg < 2:309154/139‑1 (MQ=255) aTAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGTTTTGAAg < 2:448847/141‑1 (MQ=255) aTAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGTTTTGAAg < 1:882744/141‑1 (MQ=255) tAAGAATAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGTTTTGAAGc < 1:331907/141‑1 (MQ=255) aaGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGTTTTGAAGCg < 1:776831/141‑1 (MQ=255) aaGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGTTTTGAAGCg < 2:177733/141‑1 (MQ=255) aaTAAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGTTTTGACGCGGaa > 2:124701/1‑141 (MQ=255) aTGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACGTTTAGTTACGTGTGATGGTATGGGTGACCATACAGCAGGAGAAGTTGCAAGTAAAGTTATTACAGATGAGTGGAAATCGCGTATTGAGGCGGaaa > 2:411099/1‑141 (MQ=255) aGATGCGGGTGGTATTTTTTATAATCAAACTAGTCAACAACTTTTATGTTTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTATAAATCCCGTTTTGAAGCGGAAAATCt < 1:225441/141‑1 (MQ=255) cGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGTTTTGAAGCGGAAAATCTTATAg < 2:401254/141‑1 (MQ=255) cGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGTTTTGAAGCGGAAAATCTTATAg < 2:2955/141‑1 (MQ=255) ggtATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGTTTTGAAGCGGAAAATCTTATAGaacaa > 1:671937/1‑141 (MQ=255) aTTTTTTATAATCAAACTAATCAACAACTTTTAGTTCCGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGTTTTGAAGCGGAACAACTTATACAACAACAt > 2:649489/1‑141 (MQ=255) ttATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGGTTTGGGGGGGAAAATCTTATGGAACAAAATcgcga > 1:18913/1‑137 (MQ=255) aTCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAGGTAAATTTGTTACAGATGAGTTGAAATCCCGTTTTGAAGCGGAAAATCTTATAGAACAACATCAAGCTGAAAATTGGTTGc > 2:593227/1‑141 (MQ=255) aTCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGTTTTGAAGCGGAAAATCTTATAGAACAACATCAAGCTGAAAATTGGTTGc > 1:717126/1‑141 (MQ=255) aTCAACAACTTTTAGTTCCGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGTTTTGAAGCGGAAAATCTTATAGAACAACATCAAGCTTGGTATTGGTTGc < 2:206823/141‑1 (MQ=255) caacaaCTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGTTTTGAAGCGGAAAATCTTATAGAACAACATCAAGCTGAAAATTGGTTGCGt < 2:552862/141‑1 (MQ=255) caacaaCTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGTTTTGAAGCGGAAAATCTTATAGAACAACATCAAGCTGAAAATTGGTTGCGt < 2:372698/141‑1 (MQ=255) caacaaCTTTTAGTTCGGTGTGATTGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGTTTTGAAGCGGAAAATCTTATAGAACAACATCAAGCTGAAAATTGGTTGCGt < 2:403299/141‑1 (MQ=255) caacaaCTTTTAGTTCCGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGTTTTGAAGCGGAAAATCTTATAGAACAACATCAAGCTGGAAATTGGTTGCGt > 2:776320/1‑141 (MQ=255) | GGTCAATTAAGAGCAAAGGAACGACAAGTAGAAACGAGGTAAAGACAAATGCTAGAGGCACAATTTTTTACTGATACTGGACAACATAGAGATAAGAATGAAGATGCGGGTGGTATTTTTTATAATCAAACTAATCAACAACTTTTAGTTCTGTGTGATGGTATGGGTGGCCATAAAGCAGGAGAAGTTGCAAGTAAATTTGTTACAGATGAGTTGAAATCCCGTTTTGAAGCGGAAAATCTTATAGAACAACATCAAGCTGAAAATTGGTTGCGT > USA300TCH1516_ALE/1231308‑1231583 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |