| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000731 | 26,652 | C→T | 5.6% | D66N (GAC→AAC) | USA300HOU_pUSA300HOUMR0033 ← | partitioning protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000731 | 26,652 | 0 | C | T | 5.6% | 1038.0 / 8.5 | 371 | D66N (GAC→AAC) | USA300HOU_pUSA300HOUMR0033 | partitioning protein |
| Reads supporting (aligned to +/- strand): ref base C (122/220); new base T (24/3); total (147/224) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.29e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 376 total aligned reads displayed.
TTCAATTGTTGTTTCATGACGACTTTCTTGTTTTTCAATTTGATTATTTAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTTTAATAAACGAAGTGTTTTCCTGTTTTATTGTCTCTATATTCAATCGCTTAATATTATTAA > CP000731/26512‑26792 | aaTTGTTGTTTCATGACGACTTTCTTGTTTTTCAATTTGATTATTTAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATCTTATCCGACCC‑TTTTTTTTGTTTGTCTTc > 2:11560/1‑141 (MQ=255) aTTGTTGTTTCATGACGACTTTCTTGTTTTTCAATTTGATTATTTAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCa > 1:156975/1‑141 (MQ=255) aTTGTTGTTTCATGACGACTTTCTTGTTTTTCAATTTGATTATTTAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCa < 2:361915/141‑1 (MQ=255) ttgttgTTTCATGACGACTTTCTTGTTTTTCAATTTGATTATTTAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTTTTTTTTTTCat > 2:917893/1‑140 (MQ=255) gttgttTCATGACGACTTTCTTGTTTTTTTTTTTTGTTATTTAAAGTATGTATCTGATTTATACGGTTTTCTCCTCTTTGTGCACGTCTTGTCCTTTACATGTTATTATAATTTAACCT‑TTTTTTTTGTTTTTCttttttt > 2:257198/1‑136 (MQ=255) tgttTCATGACGACTTTCTTGTTTTTCAATTTGATTATTTAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCagtagt > 1:356549/1‑141 (MQ=255) tttaTGACGACTTTCGTGTTTTTCAATTTGATTATTTAGAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACt < 1:241319/138‑1 (MQ=255) ttCATGACGACTTTCTTGTTTTTCAATTTGATTATTTAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACt > 2:400775/1‑141 (MQ=255) ttCATGACGACTTTCTTGTTTTTCAATTTGATTATTTAAAGTATCAATCTGAATTTTAAGGATTTCTACTATTTGAGCATCGCTTGTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGGAGTACt < 2:593118/141‑1 (MQ=255) tCATGACCAATTTGTTGTTTTTCAATTTTATTATTTAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACtt < 2:378978/141‑1 (MQ=255) gacgacTTTCTTTTTTTTCAATTTGATTATTTAAAGTATCAATCTTATTTTTAAGGATTTTTACTATTTGAGCATAGTTTTTTGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCaa < 2:214609/141‑1 (MQ=255) cgacTTTCTTGTTTTTCAATTTGATTATTTAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCaaaa < 1:781709/141‑1 (MQ=255) cgacCTTCTTGTTTTTCCTTTTCATTATGGAAGGTATCACTCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTGTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCaaaa < 1:169940/141‑1 (MQ=255) gtcTTTCTTGTTCTTCAATTGGATTATTTAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAAc < 1:806575/139‑1 (MQ=255) gacTTTCTTGTTTTTCAATTTGATTATTTAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCcaaaa > 2:444698/1‑140 (MQ=255) gacTTTCTTGTTTTTCAATTTGATTATTTAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCCAAAc > 2:814815/1‑141 (MQ=255) tttCTTTTTTTTCAATTTGATTATTTAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCat < 1:340109/141‑1 (MQ=255) ttCTTGTTTTTCAATTTGATTATTTAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCata < 1:152116/141‑1 (MQ=255) tttGTTTTTCAATTTCATTATTTAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑CTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATAtt < 2:161908/140‑1 (MQ=255) cTTGTTTTTCAATTTGATTATTTAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGGGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATAtt > 1:295887/1‑141 (MQ=255) cTTGTTTTTCAATTTGATTATTTAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATAtt > 1:419416/1‑141 (MQ=255) ttttttCAATTTGATTATTTAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCt < 1:711161/140‑1 (MQ=255) gTTTTTCAATTTGATTATTTAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑‑TTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCtt > 1:815397/1‑141 (MQ=255) gTTTTGGAACTTGATTATTTAACGTCACTACGTTATGTTTAAGGATTTCTACTATTTGAGCATCGCATTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCt > 1:693116/1‑141 (MQ=255) tttttCAATTTGATTATTTAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCtt < 1:762206/141‑1 (MQ=255) tttCAATTTGATTATTTAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCtttt > 2:410547/1‑141 (MQ=255) tttCAATTTGATTATTTAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAAACATATTTCtttt > 2:228654/1‑141 (MQ=255) ttgattttGATTATTTAAAGTTTCAATCTGATTTTTGAGCATCTCTCCTATTTGAGCATCGTTTTGCGATTCAAAACTAATATTATCCGTCCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCttttt < 2:83671/136‑1 (MQ=255) aTTTGATTATTTAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTTTTTTTTTTCAGTATTACTTTCAAAACCATATTTCTtttttttt > 2:543620/1‑141 (MQ=255) ttGATTATTTAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTc > 1:55644/1‑141 (MQ=255) ttGATTATTTAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACAC‑TTTTTTTTTTTTGTCTTCAGTTGTACTTTCAAAACCATATTTCttttttttttt > 2:704682/1‑140 (MQ=255) tggATTATTTAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTc > 2:714106/3‑141 (MQ=255) tttattTAAAGTATCAATCTGATTTTTAATGTTTTCTACTATTTGAGCATCGCTTTTCGTTTCAAAATTAATATTATCTTACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCAtt < 1:189561/140‑1 (MQ=255) attattTATAGTATCAATCTGATTTTTTAGGATTTCTACTATTTGAGCTTCGCTTTTCGATTCAAAATTAATATTATCCGTCCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCAtt < 1:95163/141‑1 (MQ=255) ttAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTActc < 2:608256/141‑1 (MQ=255) ttAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCAGACCC‑TTTTTTTTGTTTGTCTTCATTAGTACTTTCAAAACCATATTTTTTTTTATTTTCATTTActt > 2:335371/1‑140 (MQ=255) tgaggtctCAATGTGATTTTTAAGGATTTTCATTATTTGAGCATCGTTTTTCGGTTCAAAATTAATATTATCCGACCT‑TTTTATGTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTActct < 2:894953/134‑1 (MQ=255) taaGTATCATTTTTATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCCTTTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTActct < 2:779926/140‑1 (MQ=255) aaGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTCCTCttt > 2:298519/1‑141 (MQ=255) aaGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCGTCAGTAGTCCTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCttt > 1:26767/1‑141 (MQ=255) aGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTCTTTTCATTTACTCTTTg > 1:68212/1‑141 (MQ=255) tATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATCTTTCTTTTTATTTTCATTTACTCTTTGaa > 2:96081/1‑141 (MQ=255) ttCAATCTGATTTTTAAGGATTTCTCCTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAAt < 2:645358/140‑1 (MQ=255) aTCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAAt < 2:792266/141‑1 (MQ=255) aTCAATCCGATTTTTAAGCATTACTACTATTTGAGCATCGCTTTTCGATTCAAAATTATTATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAAt < 1:940823/141‑1 (MQ=255) tCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTTTTTGTCTTCAGTAGTACTTTCAAACCCATATTTCTTTTTATTTTCATTTTCTTTTTGattt > 1:378884/1‑138 (MQ=255) attCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAATCATATTTCTTTTTATTTTCATTTACTCTTTGAATGAt < 1:429701/139‑1 (MQ=255) tCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCACCCC‑TTTTTTTTGTTTGTCTTCAGTGGTAAGTTCAAAACCATGTTTCTTTTTATTTTCATTTTGTCGTTCGATGAttt > 1:31382/1‑141 (MQ=255) gATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGAtttttt > 1:878232/1‑141 (MQ=255) aTTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTc > 2:104462/1‑141 (MQ=255) ttttAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGAttttttttt > 1:845208/1‑138 (MQ=255) ttAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTTTCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCtata < 1:582765/141‑1 (MQ=255) tacggATTTCTATTATTTCAGCTTCGCTTTTCGATTCAAAATTAATGCTATCAGACCC‑TTTTTTTTGTTTGCCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCTTTTACTCTTTGAATGATTTTTTCTatat < 2:151192/138‑1 (MQ=255) tAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTatat < 2:886592/141‑1 (MQ=255) aatgATTTCTACTATTTGAGCATCGCTTTTCGATTCTAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATc < 2:731839/138‑1 (MQ=255) aaGGATTTCTACTGTTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATc < 2:679902/141‑1 (MQ=255) aaGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGTCCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATc < 1:896648/141‑1 (MQ=255) ggATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCgg < 1:523253/141‑1 (MQ=255) gATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGt < 2:635670/141‑1 (MQ=255) caTTTTTTCTATTTGAGTTTCTCTTTTCGATTCTAAATTAATATTATCCGACTC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGt < 2:736006/140‑1 (MQ=255) ttCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCCTTTTCTCTTTGAATGATTTTTTCTATATCGGTAtt > 1:652858/1‑140 (MQ=255) ctactaTTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTTTTTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGTTAtctt > 2:670730/1‑141 (MQ=255) aTTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTTta < 1:110939/141‑1 (MQ=255) catcctttttCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTGTATCGGTATCTTCTTTAATAAACg < 1:599590/135‑1 (MQ=255) cATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTTTTTTTTTTCATTAGGACTTTCAAAACCATATTTCTTTTTTTTTTCATTTACTCTTTGAATGGTTTTTTCTATTTTTTTTTTTTCTTtaatcttct > 2:758161/1‑136 (MQ=255) cATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTTGTACTTTCAAAACCATCTTTTTTTTTATTTTTTTTTTCTCTTTGATTTATTTTTGCTATATCGTTATCTTCTTTAATAAACg < 2:417773/141‑1 (MQ=255) cATCGCTTTTCGATTCAAAATTAATATTATCAGCCCC‑TTTTTTTTGTTTGTCTTCAGTGGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTTATATTTGAATGATTTTTTCTCTCTCGGTGTCTTTTTTATTGAAct > 1:404634/1‑140 (MQ=255) ttCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTTTAATAAACGa < 1:118768/140‑1 (MQ=255) ttttttCGTTTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTTTAATAAACGAAgt < 2:278621/139‑1 (MQ=255) ttttCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTTTTTCGTTATCTTCTTTAATAAAAGAAgtgt > 2:629652/1‑141 (MQ=255) ttttCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTACAACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTATATATCGGTATCTTCTTTAATAAACGAAgtgt > 1:630295/1‑141 (MQ=255) tttCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTTTAATAAACGAAgtgtg < 2:579154/141‑2 (MQ=255) tCGATTCAAAATTAATTTTATCCGACCT‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTTTAATAAACGAAGTGtttt < 2:247899/141‑1 (MQ=255) tCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTCGTACTTTCAACACCATCTTTCTTTTTATTTTCATTTCCTCTTTGAATGATTTTTTCTATATCGGTATCTTATTTCATCACCGGAGTGtttt > 1:509579/1‑141 (MQ=255) taTTCAAAATTAATATTATCCGCCCC‑TTTTTTTTGTTTGTCTTCAGTAATACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTTTAATAAACGAAGTGTTTTcc < 1:72329/140‑1 (MQ=255) taTTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTTTAATAAACGAAGTGTTTTcc < 1:737880/140‑1 (MQ=255) ttCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTTTAATAAACGAAGTGTTTTCCTg < 1:915492/141‑1 (MQ=255) tCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTTTAATAAACGAAGTGTTTTCCTGt < 1:748211/141‑1 (MQ=255) gcAAAATTAATTTTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTTTAGTAAACGAAGTGTTTTCCTGt < 1:661818/140‑1 (MQ=255) cAAAATTAATATTATCCGACCC‑TTTTTTTT‑TTTTTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGTTATCTTCTTTAATAAACGAAGTTCTGTCCTGttt > 2:451039/1‑141 (MQ=255) aaaaTTAATATTATTCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTTTAATAAACGAAGTGTTTTCCTGttt < 1:90334/141‑1 (MQ=255) aaaaTTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTTTAATAAACGAAGTGTTTTCCTGttt < 1:128535/141‑1 (MQ=255) aaaGTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTTTAATAAACGAAGTGTTTTCCTGtttt < 2:936964/141‑1 (MQ=255) aTTAATATTTTCCGTCCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTTTAATAAACGAAGTGTTTTCCTGTTTTAt < 2:486327/141‑1 (MQ=255) ttAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTGTAATAAACGAAGTGTTTTCCTGTTTTAtt < 2:865604/141‑1 (MQ=255) atatTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTTTAATACACGAAGTGTTTTCCTGTTTTATTGtc < 2:523892/141‑1 (MQ=255) attatCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTTTAATAAACGAAGTGTTTTCCTGTTTTATTGtctc > 1:49614/1‑141 (MQ=255) tttccttccc‑TTTTTTTTGTCTGTCTTCATTATTAATTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTTTAATAAACGAAGTGTTTTCCTGTTTTATTGTCTCta < 2:537555/134‑1 (MQ=255) cGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTTTAATAAACGAAGTGTTTTCCTGTTTTATTGTCTCTATAtt < 2:904627/141‑1 (MQ=255) ttccc‑TTATTTTTGTTTTTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTTTAATAAACGAAGTGTTTTCCTGTTTTATTGTCTCTATATTc < 2:744470/139‑1 (MQ=255) gACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCTTATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTTTAATAAACGAAGTGTTTTCCTGTTTTATTGTCTCTATATTc < 2:80223/141‑1 (MQ=255) cctcctttttttttGTTTGTTTTTAGTAGTTCTTTCAAAACCATATTTCTTTTTATTTTCATTTCCTATTTTAATGATTTTTTATATATCGGTATCTTCTTTAATAAACGAAGTGTTTTCCTGTTTTATTGTCTCTATAtt < 1:451293/135‑1 (MQ=255) aCCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTTTAATAAACGAAGTGTTTTCCTGTTTTATTGTCTCTATATTCa > 1:100583/1‑141 (MQ=255) ttttttttGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTTTAATAAACGAAGTGTTTTCCTGTTTTATTGTCTCTATATTCAATcc > 1:529958/1‑140 (MQ=255) tttttttGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTTTAATAAACGAAGTGTTTTCCTGTTTTATTGTTTCTATATTCAATCGc > 2:843585/1‑141 (MQ=255) ttttttGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTCTATTTTCATTTACTATTTGAATGATTTTTTCTATATCGGTATGTTCTTTAATATAAGAAGGGTTTTCTGGTTTTATTGTCTTTGTATTCAATCGCt > 2:501921/1‑141 (MQ=255) tttttGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTTTAATAAACGAAGTGTTTTCCTGTTTTATTGTCTCTATATTCAATCGCtt > 1:854586/1‑141 (MQ=255) gtttgtCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATTGGTATCTTCTTTAATAAACGAAGTGTTTTCCTGTTTTATTGTCTCTATATTCAATCGCTTAatat > 2:458813/1‑141 (MQ=255) tgtCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTTTAATAAACGAAGTGTTTTCCTGTTTTATTGTCTCTATATTCAATCGCTtattattat > 2:172570/1‑141 (MQ=255) cTTCAGTAGTACTTTCAAAACCTTATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTTTAATAAACGAAGTGTTTTCCTGTTTTATTGTCTCTATATTCAATCGCTTAATATTATTaa < 2:200684/141‑1 (MQ=255) | TTCAATTGTTGTTTCATGACGACTTTCTTGTTTTTCAATTTGATTATTTAAAGTATCAATCTGATTTTTAAGGATTTCTACTATTTGAGCATCGCTTTTCGATTCAAAATTAATATTATCCGACCC‑TTTTTTTTGTTTGTCTTCAGTAGTACTTTCAAAACCATATTTCTTTTTATTTTCATTTACTCTTTGAATGATTTTTTCTATATCGGTATCTTCTTTAATAAACGAAGTGTTTTCCTGTTTTATTGTCTCTATATTCAATCGCTTAATATTATTAA > CP000731/26512‑26792 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |