Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	58657	58991	335	9 [7]	[6] 8	USA300TCH1516_00049/USA300HOU_RS00245	hypothetical protein/hypothetical protein

TTACCTTATGAGGTAGCCTTTTATTTGTCACCTAATATTGCTCTAAGGCTAATAATACATATATAAAATAAATAATTATCAGAATATATTTAGAAATTGATATTTAATAATTAAATAAAAGTATGCTAAATATTTATAATTTACAAGTGAGCTGATAGAAAGATGAGTATAAGCGAATATAAAAATAGATACTTAGAGTCACTATATAACACCTTTAAAACTGAGTTAGAAAACGAACGCACTCGCTATT  >  USA300TCH1516_ALE/58881‑59130                                                                                                                |                                                                                                                                           ttACCTTATGAGGTAGCCTTTTATTTGTCACCTAATATTGCTCTAAGGCTAATAATACATATATAAAATAAATAATTATCAGAATATATTTAGAAATTGATATTTAATAATTAAATAAAAGTATGCTAAATATTTATAAtt                                                                                                               >  3:83359/1‑141 (MQ=255)                                                gCTAATAATACATATATAAAATAAATAATTATCAGAATATATTTAGAAATTGATATTTAATAATTAAATAAAAGTATGCTAAATATTTATAATTTACAAGTGAGCTGATAGAAAGATGAGTATAAGCGAATATAAAAATAg                                                                <  4:83359/141‑1 (MQ=255)                                                  taataaTACATATATAAAATAAATAATTATCAGAATATATTTAGAAATTGATATTTAATAATTAAATAAAAGTATGCTAAatat                                                                                                                       >  3:158522/1‑84 (MQ=255)                                                  taataaTACATATATAAAATAAATAATTATCAGAATATATTTAGAAATTGATATTTAATAATTAAATAAAAGTATGCTAAatat                                                                                                                       <  4:158522/84‑1 (MQ=255)                                                                                                  tGATATTTAATAATTAAATAAAAGTATGCTAAATATTTATAATTTACAAGTGAGCTGATAGAAAGATGAGTATAAGCGAATATAAAAATAGATACTTAGAGTCACTATATAACACCTTTAAAACTGAGTTAGAAaacgaac              >  2:462181/1‑141 (MQ=255)                                                                                                              atTAAATAAAAGTATGCTAAATATTTATAATTTACAAGTGAGCTGATAGAAAGATGAGTATAAGCGAATATAAAAATAGATACTTAGAGTCACTATATAACACCTTTAAAGCTGAGTTAGAAAACGAACGCACTCGCTAtt  >  1:399409/1‑141 (MQ=255)                                                                                                                taaataaaAGTATGCTAAATATTTATAATTTACAAGTGAGCTGATAGAAAGATGAGTATAAGCGAATATAAAAATAGATACTTAGAGTCACTATATAACACCTTTAAAACTGAGTTAGAAAACGAACGCACTCGCTa    <  3:39676/137‑1 (MQ=255)                                                                                                                taaataaaAGTATGCTAAATATTTATAATTTACAAGTGAGCTGATAGAAAGATGAGTATAAGCGAATATAAAAATAGATACTTAGAGTCACTATATAACACCTTTAAAACTGAGTTAGAAAACGAACGCACTCGCTa    >  4:39676/1‑137 (MQ=255)                                                                                                                |                                                                                                                                           TTACCTTATGAGGTAGCCTTTTATTTGTCACCTAATATTGCTCTAAGGCTAATAATACATATATAAAATAAATAATTATCAGAATATATTTAGAAATTGATATTTAATAATTAAATAAAAGTATGCTAAATATTTATAATTTACAAGTGAGCTGATAGAAAGATGAGTATAAGCGAATATAAAAATAGATACTTAGAGTCACTATATAACACCTTTAAAACTGAGTTAGAAAACGAACGCACTCGCTATT  >  USA300TCH1516_ALE/58881‑59130

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑