New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 = 29371993 (1.010)20 (0.010) 10/250 NT 1.1% intergenic (‑263/–) USA300HOU_RS14900/– hypothetical protein/–
?NC_012417 = 2949 1789 (0.940)intergenic (‑275/–) USA300HOU_RS14900/– hypothetical protein/–
Rejected: Frequency below/above cutoff threshold.

Only 100 of 2433 total aligned reads displayed.

ATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGT  >  NC_012417/2797‑3077
                                                                                                                                            |                                                                                                                                            
 tttttaattttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACg                                                                                                                                             >  2:968850/1‑141 (MQ=255)
    ttaattttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAgt                                                                                                                                          <  1:9593/141‑1 (MQ=255)
     tatttttttTAATTCTATTTTATTTGATAATCCTTTTTACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAgtg                                                                                                                                         <  2:1137360/138‑1 (MQ=255)
     taattttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAgtg                                                                                                                                         <  2:886593/141‑1 (MQ=255)
      aattttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAgtgt                                                                                                                                        >  1:918058/1‑141 (MQ=255)
         tttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGaa                                                                                                                                     >  1:78934/1‑141 (MQ=255)
          ttGTTAATTCGATTTTATTTGATAATCCTTTTGTCTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAAc                                                                                                                                    <  1:29189/141‑1 (MQ=255)
          ttGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAAc                                                                                                                                    <  1:89331/141‑1 (MQ=255)
           tGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTGTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACg                                                                                                                                   <  2:27653/141‑1 (MQ=255)
            gTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGa                                                                                                                                  >  1:874260/1‑141 (MQ=255)
              tAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAACAGGTTGTTTTTTGAAACGAGTGTGAACGAgt                                                                                                                                >  2:569538‑M2/1‑139 (MQ=255)
                aTTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgttt                                                                                                                              >  1:436443‑M2/1‑137 (MQ=255)
                aTTCGATTTTATTTGATAAGCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgttt                                                                                                                              >  1:1064701‑M2/1‑137 (MQ=255)
                    gATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                          <  1:171064/141‑1 (MQ=255)
                    gATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                          <  1:240739/141‑1 (MQ=255)
                    gATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                                                                          <  2:720197/141‑1 (MQ=255)
                    gATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGGGAACGAGTttcttc                                                                                                                          <  1:652146/141‑1 (MQ=255)
                      ttttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAATAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTcttctt                                                                                                                        <  1:629237/141‑1 (MQ=255)
                      ttttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTcttctt                                                                                                                        <  2:355098/141‑1 (MQ=255)
                       tttATTTGATAATCCTTTTGGCTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAGTTTATTTAGGTTTAGAGGGTCATACAAAGAAGAAGGAATAGGTTGGTTTTCGAATCGATTGTGAACGAGTTTCTtcttg                                                                                                                       <  1:774791/141‑1 (MQ=255)
                       tttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                       <  2:439002/141‑1 (MQ=255)
                       tttATTTGATAATCCTTTTGACTTGTAAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATCTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                       <  1:805044/141‑1 (MQ=255)
                       tttAATTGATAATCCTTTCTACTAATTAGAAAGTTTTATGTATTCATGTGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttg                                                                                                                       <  2:645855/141‑1 (MQ=38)
                        ttATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgt                                                                                                                      <  2:1189653/141‑1 (MQ=255)
                         tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                     >  2:928017/1‑141 (MQ=255)
                         tATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                     <  2:906593/141‑1 (MQ=255)
                         tATTTGATAATCCTTTTGACTTTTTACAAATTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                     <  1:507976/141‑1 (MQ=255)
                         tATTTGATAATCCTTGTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTCTTTAGGTTTAGAGGGGCATCAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtc                                                                                                                     <  1:1151132/141‑1 (MQ=255)
                           tttGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGTGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtctt                                                                                                                   <  2:253385/141‑1 (MQ=255)
                            ttGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTTGGTTTAGAGGGTTATAAAAAGAAGAAGGTATAGGTTGTTTTTTGAAACGAGTGTGAACGCATTTCTtcgtgtgttg                                                                                                                  >  2:336611/1‑141 (MQ=255)
                               aTAATCCTTTTGACTTTTTAGAAAGTTTTATTTGTTCATTGGTGTTCACATTAATTTATTTATGTTGAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTGTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATa                                                                                                               <  2:66347/141‑1 (MQ=39)
                                tAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATAc                                                                                                              >  1:190262/1‑141 (MQ=255)
                                  aTCCTTTTTAATTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAGTTTATTTAGGTTCAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGACTTTCTTATTGTCTTGATACta                                                                                                            <  2:819535/141‑1 (MQ=39)
                                       tttGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAg                                                                                                       >  1:941369/1‑141 (MQ=255)
                                        ttGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGa                                                                                                      >  1:1191263/1‑141 (MQ=255)
                                          gACTTTTTAGAAAGTTTTATTTATTCGTTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGaaa                                                                                                    >  2:742304/1‑141 (MQ=255)
                                          gACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGaaa                                                                                                    <  1:981563/141‑1 (MQ=255)
                                           acgttgtAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAAt                                                                                                   <  1:335525/135‑1 (MQ=255)
                                             tttttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATaa                                                                                                 >  2:1110770/1‑141 (MQ=255)
                                              ttttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATATATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAAc                                                                                                <  2:608146/141‑1 (MQ=255)
                                               tttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACt                                                                                               >  2:310885/1‑141 (MQ=255)
                                                ttAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTc                                                                                              <  1:308794/141‑1 (MQ=255)
                                                 tAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCg                                                                                             <  1:107931/141‑1 (MQ=255)
                                                    aaaGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAtt                                                                                          >  1:851001/1‑141 (MQ=255)
                                                      aGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTTTTTTTTTTTTGAACGAGATTCTGCATGTCATGATACTATTTGGAAATAACTCGCtttt                                                                                        >  2:588752/1‑141 (MQ=255)
                                                      aGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAtttt                                                                                        >  2:375344/1‑141 (MQ=255)
                                                            atttattCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTtatatat                                                                                  >  1:60955/1‑141 (MQ=255)
                                                             tttattCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTTTTTTTTTTTTGAACGAGTTTCTTCTTGTCTTGATACTATTTTGAATTTACTCTATTTtgtatatt                                                                                 >  2:459017/1‑140 (MQ=255)
                                                               tattCATTGGTTGTCACATTAATTTATTTAGTTTTAGAGTGTCATAAAAAGTAGATGGAATAGGTTGTTTTTTGAAAAGAGTGTGAACTAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGGTTTtatatatata                                                                               <  1:1043253/141‑1 (MQ=38)
                                                                  tCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCt                                                                            <  1:261913/141‑1 (MQ=255)
                                                                    aTTGGTTTTTACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGt                                                                          <  2:1085424/141‑1 (MQ=255)
                                                                     ttGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTTTTTCGTTTTTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATGTTATATATATAGCTGTa                                                                         >  2:1060173/1‑141 (MQ=255)
                                                                     ttGGTTTTCACATGAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTa                                                                         <  1:1170079/141‑1 (MQ=255)
                                                                        gTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGATACGTGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATTTATAGCTGTAACt                                                                      >  2:522531/1‑141 (MQ=255)
                                                                           ttCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAATTAACTAGATGTTATATATATGGCTGTAACTGtt                                                                   >  1:155592/1‑141 (MQ=255)
                                                                             cacaTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGGAGGAAGAGGTTGTTGTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAATTGTTGa                                                                 >  1:1130436/1‑141 (MQ=255)
                                                                             cacaTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGa                                                                 >  1:469737/1‑141 (MQ=255)
                                                                              acaTTAATTTATTTAGGTTTAGAGGGTCATAACAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAACTAACTCGATTTTGTATATATAGCTGTAACAGTGGat                                                                >  2:950052/1‑141 (MQ=38)
                                                                                       tatttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAgtg                                                       >  1:733906/1‑141 (MQ=255)
                                                                                         tttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAGCGAGTGTGAACGTGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGtt                                                     >  1:456554/1‑141 (MQ=255)
                                                                                          ttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGttt                                                    >  1:372642/1‑141 (MQ=255)
                                                                                          ttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGAAATTACAGTGttt                                                    >  2:233388/1‑141 (MQ=255)
                                                                                             ggTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATATCTGAATTTTGTATATATAGCTGTAACTGTTGATATTACAGTGTTTaaa                                                 >  1:750472/1‑141 (MQ=255)
                                                                                             ggTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTaaa                                                 <  1:353165/141‑1 (MQ=255)
                                                                                                 tAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTCTCTGTTGATATTTCAGTGTTTAAACgtg                                             <  2:1002939/141‑1 (MQ=255)
                                                                                                    agGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGttt                                          <  2:983362/141‑1 (MQ=255)
                                                                                                       gTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGtttttt                                       >  1:542530/1‑140 (MQ=255)
                                                                                                       gTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTtg                                       <  1:1000159/141‑1 (MQ=255)
                                                                                                       gTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTtg                                       <  1:1102388/141‑1 (MQ=255)
                                                                                                           tAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCg                                   <  2:426768/141‑1 (MQ=255)
                                                                                                             aaaaGAAGAAGGAATAGGTTGTTTTTTTAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACAGTAGATATTACAGTGTTTAAACGTGTTTTTGTGCGTg                                 <  2:844882/141‑1 (MQ=255)
                                                                                                              aaaGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGa                                >  2:542208/1‑141 (MQ=255)
                                                                                                                  aagaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAgg                            <  2:210407/141‑1 (MQ=255)
                                                                                                                  aagaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAgg                            >  1:2158/1‑141 (MQ=255)
                                                                                                                    gaagGAATAGGTTTTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGaa                          <  1:681004/141‑1 (MQ=255)
                                                                                                                    gaagGAATAGGTTGTTTTTTTATTCTTTTTTGAACGAGTTTCTTCCTGTCGTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGAAATTACAGTGTTTAAACGTGTTTTTTTACGTGAAAGGaa                          >  2:500323/1‑141 (MQ=255)
                                                                                                                      agGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTGCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGaaaa                        >  1:821469/1‑141 (MQ=255)
                                                                                                                       ggAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAAt                       >  1:698533/1‑141 (MQ=255)
                                                                                                                        gaactggTTGTTTTTTGTAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATCTAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAAtt                      <  2:803777/136‑1 (MQ=255)
                                                                                                                         aaTAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTGTATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAAttt                     <  2:686274/141‑1 (MQ=255)
                                                                                                                             ggTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACa                 <  2:155538/141‑1 (MQ=255)
                                                                                                                               ttgttTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGAGATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAAt               >  2:1023216/1‑141 (MQ=255)
                                                                                                                                tgttTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGCAATAATTGACAATa              >  2:184685/1‑141 (MQ=255)
                                                                                                                                 gttTTTTGAAACGAGTGAGAACGAGATTCTTCTTGTCTTTATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTCTGTGCGTGAAAGGAAAATTTGACAATaa             >  2:401229/1‑141 (MQ=255)
                                                                                                                                  ttttttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaa            >  1:397642/1‑141 (MQ=255)
                                                                                                                                  ttttttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaa            <  1:526415/141‑1 (MQ=255)
                                                                                                                                   tttttGAAACCAGTGTTAGCGGTGTTCTTCTTGTCTTGATACTATATAGAAATAAATTGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTTCGTGAAAGGAAAATTTGACAATaaaa           <  2:481010/141‑1 (MQ=255)
                                                                                                                                     tttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTTTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATaaaaaa         >  2:625616/1‑141 (MQ=255)
                                                                                                                                      ttGAAACGATTGTGAACGAGTTTCTTCTTGTTTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGGAACTGTTGATACTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAAc        <  1:564452/141‑1 (MQ=255)
                                                                                                                                        gAAACtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaatcgaa      >  2:1163080‑M1/1‑5 (MQ=255)
                                                                                                                                        gAAACtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaatcgaa      <  1:133587‑M1/141‑137 (MQ=255)
                                                                                                                                        gAAACGAGTGTTAACGAGTTTCGTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAAccc      <  1:493153/141‑1 (MQ=255)
                                                                                                                                         aaaCtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaatcgaat     >  2:763175‑M1/1‑4 (MQ=255)
                                                                                                                                         aaaCtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaaacgaat     >  1:586572‑M1/1‑4 (MQ=255)
                                                                                                                                         aaaCtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaacgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaatcgaat     >  2:866866‑M1/1‑4 (MQ=255)
                                                                                                                                         aaaCtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctcgaaacctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaatcgaat     >  2:134373‑M1/1‑4 (MQ=255)
                                                                                                                                         aaaCGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAAcccc     <  1:415193/141‑1 (MQ=255)
                                                                                                                                          aaCtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgactaaataaaactttctaaaaagtcaaaaggattatcaaataaaatcgaatt    >  2:784929‑M1/1‑3 (MQ=255)
                                                                                                                                           aCtcgttcacacccgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaataaataaaactttctaaaaagtcaaaaggattatcaaataaaatcgaatta   <  1:1021180‑M1/141‑140 (MQ=255)
                                                                                                                                           aCGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAg   >  2:705098/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                            
ATTTTTAATTTTGTTAATTCGATTTTATTTGATAATCCTTTTGACTTTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGT  >  NC_012417/2797‑3077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.