| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,232,148 | G→C | 68.1% | G18A (GGC→GCC) | prkC → | Serine/threonine‑protein kinase PrkC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,232,148 | 0 | G | C | 68.1% | 122.1 / 87.2 | 97 | G18A (GGC→GCC) | prkC | Serine/threonine‑protein kinase PrkC |
| Reads supporting (aligned to +/- strand): ref base G (16/15); new base C (29/36); total (46/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.62e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.04e-01 | |||||||||||
GGTGATCAATTAATGCAATTGGCATTAGATAACCATTCGAAAGATAACGTTACTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGGCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAAAGAAGAAACATTAAAACGTTTTGAACGAGAAGTACATAACTCAT > USA300TCH1516_ALE/1232010‑1232282 | ggTGATCAATTAATGCAATTGGCATTAGATAACCATTCGAAAGATAACGTTACTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGgcgccg < 2:803949/141‑1 (MQ=255) ggtacAATTAAGTCAATTGGCATTAGATAACCATTCGAAAGATAACGTTACTTTCATTCTCGCGGCTATTGAAGGTGATAAAGGATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGGCGGt < 2:559243/137‑1 (MQ=255) gATCAATTAATGCAATTGGCATTAGATAACCATTCGAAAGATAACGTTACTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAGTTGTAGATAAGCGTGGcggcggag > 1:637166/1‑139 (MQ=255) aaactAATGCAACTGGCATTAGATAACCATTCGAAACGTAACCCTACGTTCATACTCGCGTCTATTGAGGGTGATAAAGTATGATAGTTAATATTATAAATGAACGTTATCAAATTGTAGATAAGCTTGGCGCCGGTGGCa < 2:192527/137‑1 (MQ=255) aaTTAATGCCATTGGCAGTAGATAACCATTCGAAAGATAACGTTACTTGCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCAt < 2:271067/141‑1 (MQ=255) aTTAATGCAATTGGCATTAGATAACCATTCGAAAGATAACGTTACTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGGCGGTGGCATg < 1:872336/141‑1 (MQ=255) ttAATGCAATTGGCATTAGATAACCATTCGAAAGATAACGTTACTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAAATAAGCTTGGCGGCGGTGGCATGa > 1:895508/1‑141 (MQ=255) tAATGCAATTGGCATTAGATAACCATTCGAAAGATAACGTTACTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAg > 1:686332/1‑141 (MQ=255) aaTGCAATTGGCATTAGATAACCATTCGAAAGATAACGTTACTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGact > 2:270151/1‑139 (MQ=255) aTGCAATTGGCATTAGATAACCATTCGAAAGATAACGTTACTTTCATACTCGCGGCTATTGAGGGTGATAAAGAATAATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCGTGGCGGCGGATGAATGAGTa > 2:991510/1‑141 (MQ=255) tGCAATTGGCATTAGATAACCATTCGAAAGATAACGTTACTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTAc > 1:959852/1‑141 (MQ=255) gCAATTGGCATTAGATAACCATTCGAAAGATAACGTTACTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGGCGGTGGGATGAGTAct > 2:644184/1‑140 (MQ=255) gCAATTGGCATTAGATAACCATTCGAAAGATAACGTTACTTTCATACGCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGACATGAGTAcc < 2:810435/141‑1 (MQ=255) taaTTGGCAGTATATAACCACTCGAAAGATAACGTTACTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATTAACGATATAAAATTGTAGATAAGCTTGGCGGCGGTGGCATGAGTACCg < 1:510274/140‑1 (MQ=255) aTTGGCATTAGATAACCATTCGAAAGATAACGTTACTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGtt > 2:109796/1‑141 (MQ=255) aTTGGCATTAGATAACCATTCGAAAGATAACGTTACTTAAAAACTCGCGGCTATGGAAGGTGAAAAAGTATGATAGGTAAAATAATAAATAAACGATATAAAATTGTCGATAAGCAAGGCGCCGGGAGCATGAGTACCGtt > 2:1133544/1‑141 (MQ=255) tGGAATTAGATAACCATTCGAAAGATAACGTTACTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTa < 2:1040358/141‑1 (MQ=255) ggCATTAGATAACCATTCGAAAGATAACGTTACTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGGCGGTGGCATGAGTACCGTTTAt < 1:907154/141‑1 (MQ=255) gCATGAGATAACCATTCGAAAGATAACGTTACTTTCATACTCGCGGCAAATGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGGGGGCTGGGTACCGCTTATc > 2:481457/1‑141 (MQ=255) acATTAGATAACCATTCGAAAGATAACGTTACTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTATATAAGCTTGACGACGGGGGCATGGGTAACGCTTATc > 2:311943/2‑141 (MQ=255) tAGATAACCATTCGAAAGATAACGTTACTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGc < 1:802032/141‑1 (MQ=255) gATAACCATTCGAAAGATGACGTTACTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGGTATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTg < 1:775505/141‑1 (MQ=255) gATAACCATTCGAAAGATAACGTTACTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGGCGGTGGCATGAGTACCGTTTATCTTGCTg < 2:1046351/141‑1 (MQ=255) ccATTCGAAAGATAACGTTACTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAgat < 1:1056493/141‑1 (MQ=255) ccATTCGAAAGATAACGTTACTTTCATACTCGCGACTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAgat < 1:994643/141‑1 (MQ=255) aTTCGAAGCCTAACGTTACTTCAATTCGCGCCGCTATGGAAGGTGATAAAGTAAGATAGGTAAAATAATAAATGAACGATATAAAAGTGTAGATACGCTTGGCGGCGGTGGCATGAGTACCGTTTATCTTGCTGAAgatac < 1:108953/141‑1 (MQ=255) aTTCGAAAGATAACGTTACTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAgatac < 2:907962/141‑1 (MQ=255) aTTCGAAAGATAACGTTACTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAgatac < 1:1021579/141‑1 (MQ=255) ttCGAAAGATAACGTTACTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAgatacg < 2:428087/141‑1 (MQ=255) ttCGAAAGATAACGTGACTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAgttacg > 1:887783/1‑141 (MQ=255) tCGAAAGATAACGTTACTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAgatacga < 2:458311/141‑1 (MQ=255) gaaaatgTTACTTTCATACTCGCGGCCAGTGAAGGTGATAAAGTATGACAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGCAGATACGGTACGTa > 2:911528/7‑141 (MQ=255) gATAACGTTACTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTGGATGAGCTCGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTa > 1:461313/1‑141 (MQ=255) tAACGTTACTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAAc > 1:974002/1‑141 (MQ=255) aaCGTTACTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCACCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACa < 2:778689/141‑1 (MQ=255) cGTTACTTTCATACTCGCGGCTATTGAAGGTGAGAAAGTATGATAGGTAAAATAATAAATGAACGCTGTAAAATTGTAGGTAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATGCTTAACAtt > 1:30660/1‑141 (MQ=255) gTTACTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTa > 1:744671/1‑141 (MQ=255) tACTTTCATACTCGCGGCTAATGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGGGGCATGGGTACGGTTTATCTTGCTGAAGATCACATACTTAACATTaaa > 1:69008/1‑141 (MQ=255) aCTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGCTTATCTTGCTGAAGATACGATACTTAACAtagcag > 1:1022297/1‑136 (MQ=255) cTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGGCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGt < 1:1085524/141‑1 (MQ=255) ttgctACTCGCGGCTATTCAGGGTCATGAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGGCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTg < 2:835913/137‑1 (MQ=255) aTACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCaa > 1:181438/1‑141 (MQ=255) tACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATGCGATACTTAACATTAAAGTTGCatt > 2:708871/1‑139 (MQ=255) tcggggtATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAAGTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAg < 1:537384/135‑1 (MQ=255) cgcgGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAg > 2:614690/1‑141 (MQ=255) gcgGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAgg > 2:435571/1‑141 (MQ=255) ggCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTCGAATGAAGGCg > 2:835280/1‑141 (MQ=255) tATTGAATGTGATAAAGTAGGATAGGGAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGGCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGAtt < 2:169451/141‑1 (MQ=255) aTTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATCCCCTTGTAGATGAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGAttt < 2:1149590/141‑1 (MQ=255) ttGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCACCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGAtttt > 2:333707/1‑141 (MQ=255) ttGAAGGGTATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTCCCGTTTATCTTGCTGAAGATACGATACTTCACATTAAAGTTGCAATTAAGGCGAtttt < 2:937960/141‑1 (MQ=255) ttGAAGGGGATAAAGTATTATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGGCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGAtttt < 2:180551/141‑1 (MQ=255) tGAAGGTGATACAGCAATATAGGTAAAATAATAATGGAACGTCTTCGGTTCATACGCGAGCTTGGCGCCGGTGGCATTAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGAttttt < 1:270151/141‑1 (MQ=255) tGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGGCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGAttttt < 2:939499/141‑1 (MQ=255) gAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGGCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTta > 1:709984/1‑141 (MQ=255) gAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGGCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTGGCAATTAAGGCGAtttttt > 2:1115033/1‑140 (MQ=255) aaGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTtat < 1:897055/141‑1 (MQ=255) aaGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTtat < 1:179216/141‑1 (MQ=255) aGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGGCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTtata > 2:306359/1‑141 (MQ=255) aGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTtata < 1:166635/141‑1 (MQ=255) tAAAGTATGATAGGTAAAATAATAAATGAACGATACAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCt < 2:651577/141‑1 (MQ=255) tAAAGTAAGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGGCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCt > 2:1188367/1‑141 (MQ=255) tAAAGGATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCt < 2:119725/141‑1 (MQ=255) aaGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTag < 1:1073131/141‑1 (MQ=255) tATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGGCGGTGGCATGAGTACCGTTTATATTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAgaga > 2:51813/1‑141 (MQ=255) atgtaaGGCAAAAGAATAAATCAACGACATAAAATTGTAGATACGCTTGGCGGCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTAAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGaa < 1:444806/136‑1 (MQ=255) tAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGGCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAGTTAAGGCGATTTTTATACCACCTAGAGAAAaag > 1:927759/1‑141 (MQ=255) tAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAaag > 2:917554/1‑141 (MQ=255) tAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAaag < 1:155488/141‑1 (MQ=255) ggTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACTATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAaagaa > 2:483506/1‑141 (MQ=255) gTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAaagaag < 2:481052/141‑1 (MQ=255) ataataAATGAACGATATAAAATTGTAGATAAGCTTGGCGGCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATGCGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTCTACCCCCTAGGGACAAGGAAGAAGCa > 2:1021127/1‑141 (MQ=255) ataataAATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAAAGAAGAAACa < 2:959852/141‑1 (MQ=255) ataaATGAACGATATAAAATTGTAGATAAGCTTGGCGGCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAAAGAAGAAACATTa < 1:1193255/141‑1 (MQ=255) taaATGAACGATATAAGATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATCCCACCTAGCGAAAAAGAAGAAACATTaa > 1:713592/1‑141 (MQ=255) taaATGAACGATATAAAATTGTAGATAAGCTTGGCGGCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAAAGAAGAAACATTaa > 1:587542/1‑141 (MQ=255) taaATGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAAAGAAGAAACATTaa > 1:990024/1‑141 (MQ=255) aaaTGAACGATATAAGATTGTAGATAAGCTTGGCGGCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATGCTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAAAGAAGAAACGTTaaa > 2:642976/1‑141 (MQ=255) aacgAACGATATAAAATTGTAGATAAACTTAGAGCCGGTGGCATGAGTACCGTATATCTTGAAAAAGATACAATACTTAACATTAAAATTGCAATTAAGGCTATTTTTATACCACCTAGAGAAAAAGAAGAAACATTaaaa < 2:235734/138‑1 (MQ=255) aaTGAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAAAGAAGAAACATTaaaa < 1:109796/141‑1 (MQ=255) gAACGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAAAGAAGAAACATTAAAACGt < 1:930763/141‑1 (MQ=255) aCGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCAGATTGAGGAAATGAAGAAACATTAAAACGttt > 1:681154/1‑141 (MQ=255) aCGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAAAGAAGAAACATTAAAACGttt < 1:389196/141‑1 (MQ=255) aCGATATAAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAAAGAAGAAACATTAAAACGttt > 1:688946/1‑141 (MQ=255) tataAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCATTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAAAGAAGAAACATTAAAACGTTTTGaa > 2:530544/1‑141 (MQ=255) tataAAATTGTAGATAAGCTCGGTTCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAAAGAAGAAACATTAAAACGTTTTGaa > 1:1189233/1‑141 (MQ=255) ataAAATTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAAAGAAGAAACATTAAAACGTTTTGAAc < 2:439071/141‑1 (MQ=255) aaaaTTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAAAGAAGAAACATTAAAACGTTTTGAACga < 2:154009/141‑1 (MQ=255) aaaaTGGTAGATAAGCTTGGCGGCGGTGGCATGGGTACCATTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTGTTATACCACCTAGAGAAAAAGAAGAAACATTAAAACGTTTTGAACga < 2:471553/141‑1 (MQ=255) aaaTTGTAGATAAGCTTGGGCCCGGTGCCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAAAGAAGAAACATTAAAACGTTTTGAACgag < 2:1022297/141‑1 (MQ=255) aaaTTGTAGATAAGCTTGGCGGCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAAAGAAGAAACATTAAAACGTTTTGAACgag > 1:402639/1‑141 (MQ=255) aaaTTGTAGATAAGCTTGGCGGCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAAAGAAGAAACATTAAAACGTTTTGAACgag > 1:363870/1‑141 (MQ=255) aaaTTGTAGATAAGCTTGGCGGCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAAAGAAGAAACATTAAAACGTTTTGAACgag > 1:672235/1‑141 (MQ=255) aTTGTAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAAAGAAGAAACATTAAAACGTTTTGAACGAGaa > 2:645705/1‑141 (MQ=255) tAGATAAGCTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAAAGAAGAAACATTAAAACGTTTTGAACGAGAAGTAc < 1:1094528/141‑1 (MQ=255) gATAAGCTTGGCGGCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAAAGAAGAAACATTAAAACGTTTTGAACGAGAAGTACAt < 1:918386/141‑1 (MQ=255) aaGCTGGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAAAGAAGAAACATTAAAACGTTTTGAACGAGAAGTACATAAc < 2:675527/141‑1 (MQ=255) cTTGGCGCCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAAAGAAGAAACATTAAAACGTTTTGAACGAGAAGTACATAACtca < 1:1200118/141‑1 (MQ=255) ttGGCGGCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAAAGAAGAAACATTAAAACGTTTTGAACGAGAAGTACATAACtcat > 1:1138492/1‑141 (MQ=255) taggcgccTGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACGTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAAAGAAGAAACATTAAAACGTTTTGAACGAGAAGTACATAACtcat < 1:1133544/139‑1 (MQ=255) | GGTGATCAATTAATGCAATTGGCATTAGATAACCATTCGAAAGATAACGTTACTTTCATACTCGCGGCTATTGAAGGTGATAAAGTATGATAGGTAAAATAATAAATGAACGATATAAAATTGTAGATAAGCTTGGCGGCGGTGGCATGAGTACCGTTTATCTTGCTGAAGATACGATACTTAACATTAAAGTTGCAATTAAGGCGATTTTTATACCACCTAGAGAAAAAGAAGAAACATTAAAACGTTTTGAACGAGAAGTACATAACTCAT > USA300TCH1516_ALE/1232010‑1232282 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |