| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,808,702 | A→T | 6.8% | I204I (ATT→ATA) | accA ← | Acetyl‑coenzyme A carboxylase carboxyl transferase subunit alpha |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,808,702 | 0 | A | T | 6.8% | 348.8 / 9.2 | 116 | I204I (ATT→ATA) | accA | Acetyl‑coenzyme A carboxylase carboxyl transferase subunit alpha |
| Reads supporting (aligned to +/- strand): ref base A (61/47); new base T (4/4); total (65/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.29e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.80e-01 | |||||||||||
Only 100 of 135 total aligned reads displayed.
ATATCATGGGCAGTAATTTTCATTGTTTCAGCTGCAATTTTAGCCAAATTACTGTCTTTCCATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCCACGTTCTTCAGCAGCTTTACCAGGATATGCAC > USA300TCH1516_ALE/1808562‑1808841 | atCATGGGCAGTAATTTTCATTGTTTCAGCTGCAATTTTAGCCAAATTACTGTCTTTCCATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGcaataccaat > 1:166631/1‑141 (MQ=255) tGGGCAGTAATTTTCATTGTTTCAGCTGCAATTTTAGCCAAATTACTGTCTTTCCATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTCACATCAATACTTTATTGGCAATCCCAATACCt > 1:217285/1‑141 (MQ=255) tGGGCAGTAATTTTCATTGTTTCAGCTGCAATTTTAGCCAAATTACTGTCTTTCCATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCt > 1:1121398/1‑141 (MQ=255) ggCAGTAATTTTCATTGTTTCAGCTGCAATTTTAGCCAAATTACTGTCTTTCCATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTATTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTag < 2:697079/141‑1 (MQ=255) gCAGTAATTTTCATTGTTTCAGCTGCAATTTTAGCCAAATTACTGTCTTTCCATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCCCTAACATCAATACTTTATTGGCAATACCAATACCTaga < 2:226976/141‑1 (MQ=255) cAGTAATTTTCATTGTTTCAGCTGCAATTTTAGCCAAATTACTGTCTTTCCATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTagag > 1:378983/1‑141 (MQ=255) gTAATTTTCATTGTTTCAGCTGCAATTTTAGCCAAATTACTGTCTTTCCATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCa > 1:87676/1‑141 (MQ=255) tAATTTTCATTGTTTCAGCTGCAATTTTAGCCAAATTACTGTCTTTCCATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAACACTTTAATGGCAATACCAATACCTAGAGCAc < 2:967703/141‑1 (MQ=255) ttCATTGTTTCAGCTGCAATTTTAGCCAAATTACTGTCTTTCCATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTccc > 2:189448/1‑140 (MQ=255) gTTTCAGCTGCAATTTTAGCCAAATTACTGTCTTTCCATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGccc > 2:419028/1‑140 (MQ=255) tttCAGCTGCAATTTTAGCCAAATTACTGTCTTTCCATAATAATGCCGCTGCACCTGCAGGAGATATAACAGAGTAAGTACTAGTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCAc < 2:157961/141‑1 (MQ=255) ttccAGCTGCAATGTTAGCCAAATTACTGTCTTTCCATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCAc < 2:478973/138‑1 (MQ=255) cTGCAATTTTAGCCAAATTACTGTCTTTCCATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCAACTCCACTGCCACCTTCAc > 2:201174/1‑141 (MQ=255) tGCAATTTTAGCCACATTACTGTCTTTCCATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCAcc < 1:593167/141‑1 (MQ=255) gCAATTTTAGCCAAATTACTGTCTTTCCATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCa > 2:705510/1‑141 (MQ=255) cAATTTTAGCCAAATTACTGTCTTTCCATAATAATGCCGCTGCACCTTCAGGAGCTATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCTATACCTAGAGCACCTCCACTGCCACCTTCACCaa > 2:547070/1‑141 (MQ=255) cAATTTTAGCCAAATTACTGTCTTTCCATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCTATACCTAGAGCACCTCCACTGCCACCTTCACCaa > 2:547182/1‑141 (MQ=255) cAATTTTAGCCAAATTACTGTCTTTCCATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCTATACCTAGAGCACCTCCACTGCCACCTTCACCaa > 2:1101710/1‑141 (MQ=255) aTTTTAGCCGAATTACTGTCTTTCGATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGACCACCTCCACTGCCACCTTCACCaaag > 1:876915/1‑139 (MQ=255) ttttAGCCAAATTACTGTCTTTCCATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGa > 1:151248/1‑141 (MQ=255) ttAGCCAATTCACTGTCTTTCCATAATAATGCCGCTGCACCTTCAGGAGCTAGAACATATTACGTACTATTCTCTAACAGCAATCCTTTATTGGCAATACCAATACCTAGAGCACCCCCACTGCCACCTTCACCAATGACa < 2:166565/141‑1 (MQ=255) aGCCAAATTACTGTCTTTCCATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAAt < 2:1139528/141‑1 (MQ=255) ccAAATTACTGTCTTTCCATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCg < 1:454257/141‑1 (MQ=255) ccAAATTACTGTCCTTCCATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAACACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCg < 1:754876/141‑1 (MQ=255) aaTTACTGTCTTTCGATAAGAATGCGGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCaa > 1:657376/1‑141 (MQ=255) aTTACTGTCTTTCCATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCCCTGCCACCTCCACCAATGACAATTGCAAt > 2:590165/1‑141 (MQ=255) aCTGTCTTTCCCTCATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGGACTATTCTCGAACACCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAAc < 1:103592/141‑1 (MQ=255) aCTGTCTTTCCATAATAATGCCGCTGCACATTAAGGAGACAGAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAAc < 1:219150/141‑1 (MQ=255) gTCTTTCCATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATCGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTgg > 1:807346/1‑141 (MQ=255) gTCTTTCCATAATAATGCCGATGCACCTGCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTgg > 1:774326/1‑141 (MQ=255) tCTTTCCATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGt > 1:355334/1‑141 (MQ=255) tCTTTCCATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTACTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTACACTGCCACCTTCACCAATGACAATCGCAATAACTgga > 1:778051/1‑140 (MQ=255) ttCCATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACt < 1:254652/141‑1 (MQ=255) ccATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATCCCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACttt < 2:607638/141‑1 (MQ=255) ataataATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTa < 1:1162634/141‑1 (MQ=255) aataatGCCGGTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAAt > 2:809946/1‑141 (MQ=255) aatGCCGCTGCACCGTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGaa > 1:639505/1‑141 (MQ=255) atGCCGCTGCACCTTCAGGAGATACAACAGAGTAAGTACTATTCTCTAACATCAATCCTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAg > 1:873914/1‑141 (MQ=255) tGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAGTTCTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGc < 2:657376/141‑1 (MQ=255) tGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGc < 1:271549/141‑1 (MQ=255) gCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATCCCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGcc < 2:977042/141‑1 (MQ=255) ccGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGCAGCCa > 2:1137713/1‑141 (MQ=255) tGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCAtctc < 2:677784/141‑1 (MQ=255) ccTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCtcaatc > 1:1174750/1‑141 (MQ=255) cTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCtcaatca > 2:1125685/1‑141 (MQ=255) cAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAAt < 1:759315/141‑1 (MQ=255) aGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAAtt < 2:106615/141‑1 (MQ=255) ggAGATATAACAGAGTAAGTACAATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAAGGACAATCGCAATAACTGGTAATTTTAATGAAGCCATCTCAATCAAAttt < 2:1172886/141‑1 (MQ=255) gagaTATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCACTAACTGGTACTTTTAATGAAGCCATCTCAATCAAATttg > 2:423480/1‑141 (MQ=255) gagaTATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAAAttg > 2:649150/1‑141 (MQ=255) gttataACAGAGTAAGTACTATTCTCTAACTTCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACTATCGCAATTACTGGTACTTTTAATGAAGCCATCTCAATCAAATttgtt < 2:283297/139‑1 (MQ=255) tataACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGc > 1:918994/1‑141 (MQ=255) ataACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCg > 1:690265/1‑141 (MQ=255) ataACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCg > 1:690251/1‑141 (MQ=255) aaCAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGAt < 1:919016/141‑1 (MQ=255) aagtaCTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCAc < 1:943279/141‑1 (MQ=255) ataCTATTCTCTAACCTCAATACTTCCTTGGCAATACCAATACCTAGAGCCCCGCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGCAGCCATCTCAATCAAATTTGTTGCGATAGATTCACtt < 2:1176060/140‑1 (MQ=255) accatgctctAACATCAATACTGTATTGGCAATACCAATACCTCGCGCACCTTCACGGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCAGCTCAATCAAATTTGTTGCGATAGACTCACTTTg < 2:894901/135‑1 (MQ=255) aCTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGTTACTTTTAATGAAGCCATCTCCACTAATTAAGGTGGGATAGATTCACTTTg < 2:850575/141‑1 (MQ=255) aCTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAACCAAATTTGTTGCGATAGATTCACTTTg > 2:443199/1‑141 (MQ=255) tATTCTTTAACATCAAGACTTTATTCGCCATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTc < 1:985276/141‑1 (MQ=255) tctAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCCACGt > 1:182265/1‑141 (MQ=255) tctAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCCACGt < 2:501665/141‑1 (MQ=255) tctAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCCACGt > 2:176410/1‑141 (MQ=255) tctAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCCACGt > 1:751929/1‑141 (MQ=255) ctAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCCACGtt > 2:689959/1‑141 (MQ=255) ctAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCCACGtt < 1:1193867/141‑1 (MQ=255) tAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCCACGttc > 2:2528/1‑141 (MQ=255) aCATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATACCTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCCATTTGTCCAAgttgtt > 1:267316/1‑141 (MQ=255) cATCAATACTTTATTGGCAATACCTATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCCACGttcttc < 1:1101710/141‑1 (MQ=255) cATCAATACTTTATTGGCAATACCTATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCCACGttcttc < 1:547070/141‑1 (MQ=255) cATCAATACTTTATTGGCAATACCTATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCCACGttcttc < 1:547182/141‑1 (MQ=255) aTCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCCACGTTCTTca > 2:371528/1‑141 (MQ=255) tCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCCACGTTCTTcag < 2:499086/141‑1 (MQ=255) tCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTAACTTTGTCCACGTTCTTcag > 1:1095897/1‑141 (MQ=255) tCAATACTTTATTGGCAATACAAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGAAAATGGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGAGATAGATTAACTTTGTACACGTTGTGcag > 1:533878/1‑141 (MQ=255) aaTACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATGGATTCACTTTGTCCACGTTCTTcagca > 1:787342/1‑141 (MQ=255) tACTTTATTGACCATACTAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCGATCAAATTTGTTGCGATAGATTCACTTTGTCCACGTTCTTCagcagc < 2:774326/141‑1 (MQ=255) cTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCCACGTTCTTCAGCAGCtt > 1:961915/1‑141 (MQ=255) cTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGAGTCACTTTGTCCATGTTCTTCAGCAGCtt < 1:939943/141‑1 (MQ=255) ttATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCCACGTTCTTCAGCAGCTTTa > 2:394298/1‑141 (MQ=255) ttATTGGCAATACCAATACCTAGAGCACCGCCACTGCCACCTTCACCAATGACAATCGCAGTAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCAACGTTCTTCAGCAGCTTTa > 2:1002904/1‑141 (MQ=255) tatgttcaataccaatacCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCCACGTTCTTCAGCAGCTTTAc < 2:519470/135‑1 (MQ=255) tATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCCACGTTCTTCAGCAGCTTTAc > 1:297007/1‑141 (MQ=255) agtGGCACTACCAATACCTAGAGCACCTCCACCGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCCACGTTCTTCAGCAGCTTTAcc < 2:254056/139‑1 (MQ=255) tGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCCACGTTCTTCAGCAGCTTTACCAg < 1:702559/141‑1 (MQ=255) ggCAATACCAATACCTACAGCACCTCCACTGCCACCTTCACCAATCACAATCGCAATAACTGTTACTTTTACTGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACGTTGTCCACGTTCTTCAGCAGCTTTACCAgg < 1:129248/141‑1 (MQ=255) gCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCAACAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTGGTTGCGATAGATTCACTTTGTCCACGTTCTACAGCAGACTTAcccgaa > 2:535448/1‑137 (MQ=255) caataccaatacCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCCACGTTCTTCAGCAGCTTTACCAGGat > 2:423002/1‑141 (MQ=255) caataccaatacCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCCACGTTCTTCAGCAGCTTTACCAGGat < 2:901177/141‑1 (MQ=255) caataccaatacCTAGAGCACCTACCCAGGTACTTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCAATTTGTCCACGTTCTTCAGCAGCTTTACCAGGat > 1:284393/1‑141 (MQ=255) aataccaatcccTATAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATATCTGTTACTTTTAATGAAGCCATGTCAATCAAATTTGTTGCGATAGATTCACTTTATCCACGCTCTTCAGCAGCGTTACCAGGata > 2:1112898/1‑141 (MQ=255) aataccaataccTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCCACGTTCTTCAGCAGCTTTACCAGGata > 1:1013302/1‑141 (MQ=255) ataccaataccTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCCACGTTCTTCAGCAGCTTTACCAGGatat < 2:807346/141‑1 (MQ=255) ataccaataccTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCCACGTTCTTCAGCAGCTTTACCAGGatat < 2:794639/141‑1 (MQ=255) taccaataccTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCCACGTTCTTCAGCAGCTTTACCAGGATATg > 1:932879/1‑141 (MQ=255) accaataccTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCCCTTTGTCCACGTTCTTCAGCAGCTTTACCAGGATATGc > 2:77518/1‑141 (MQ=255) ccaataccTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCCACGTTCTTCAGCAGCTTTACCAGGATATGCa > 1:906324/1‑141 (MQ=255) ccaataccTAAAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTAATTAACGACTGGTGCGATAGATTCACTTTGTCCACGTTCTTCAGCAGCTTTACCAGGATATGCa > 1:275205/1‑141 (MQ=255) caataccTAGAGCCCCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCCACGTTCTTCAGCAGCTTTACCAGGATATGCAc < 2:102742/141‑1 (MQ=255) | ATATCATGGGCAGTAATTTTCATTGTTTCAGCTGCAATTTTAGCCAAATTACTGTCTTTCCATAATAATGCCGCTGCACCTTCAGGAGATATAACAGAGTAAGTACTATTCTCTAACATCAATACTTTATTGGCAATACCAATACCTAGAGCACCTCCACTGCCACCTTCACCAATGACAATCGCAATAACTGGTACTTTTAATGAAGCCATCTCAATCAAATTTGTTGCGATAGATTCACTTTGTCCACGTTCTTCAGCAGCTTTACCAGGATATGCAC > USA300TCH1516_ALE/1808562‑1808841 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |